FvH4_3g00100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016277
Physical Location & Seq
Reverse (-)
73036 .. 74997
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00100.t1

Sequence Viewer

Length: 1962 bp
ATGTTATCCTTTGCTTTCCTTCCCCGACGGCTTCCCGCCGTAATTCAAACCTTACGACAGTTCAATTCTTGTGCTCAGGTGGAGCCAAATGACTTGAATTCGAATTCGATCGAAGCCGGTCCAGACCTGAGTTGTTCGTATACGTATAGCTGTAACTGTGAGATAACAAAGTTGGGCCGCTGTGGCAAAGTGAAAGATGCAAGGCACCTGTTCGACGATATGCCTCAACCAGATGCCGTCTCTTATGCGTCCATGATCAATGTTTACTTAAAGAACCATGATCTCCCCAGTGCAGAGAGGCTCTTTCAGGCGATGCCCACCTCTAATATTGTCGCTGAATCTGCAATGATTAGTGGATATGCCAAGGCCGGCCGTATTGGTGACGCTCGTCACGTTTTTGATCGCATGGAAAACAGAAATGTGTATTCTTGGACCAGCCTGATATCCGGGTATTTCAGTTGCGGACAAGTTGACGAGGCCCGTCGGCTTTTTGGTCATATGCCTGTAAAAAATGTGGTGTCCTGGACTACTATGATTCTGGGTTACGCGCGCAACGACGTGGTTGATGAAGCGCGCCATGTGTTTAACCTTATGCCCGAAAGGAACACCGTCTCATGGACAGTTATGATCAAGGCTCTTATTGATAATGATCAATTTGATGAGGCACTTAGCCTCTTCAATGATATGCCACAGCGCAACCTGTATTCTTGGAACATCATAATCTTGGGTCTTCTTATTGCAAATAGAGCAAGTGAAGCCATCAAACTCTTCGATTCAATGCCTTGCAGGAATGCAATTTCTTGGACTACTATGGTTACGGGTCTGGCACACAACAACATGGCTCAACTTGCAAGGGAGTACTTTGATCGCATGCCTAACAAAGATGTAGCTGCCTGGAATGCTATGATTGCAGCATATGTTGACCAAGGCCTTGTGGCAGAAGCCGCTGAGCTGTTCAGTTTGATGCACGAAAGGAATGTTGTTACTTGGAATCTGATGATTGATGGTTATACCAAAAGTGGATCAAAAGAAGAAGCCTTAAAGCACCTAATTCTGATGCTTCGATTTTGCTTCAGACCTAATGGGACTACAATGGCTAGTGTGTTGAGCTCATGCGAGGGCATGATGGAGCTAATGCAATCTCATGCACTGGTCCTATTACATGGGTTTGAGCATGACACTGTGGTTGTGAATACACTAGTTACTATGTATTCCAGAAATGGGGATGTTACTTCTGCTAGGTTTGTTTTTGATCATCTTAGGGAAAAGGATATGGCATCATGGAATGCAATGGTGTCAGCGTATTCAAATAACGGGTATGGTCACCATGCATTGCAGGTCTTTGCTCACATGTTAAGATCAGGAACCAAGCCAGATGAAATTACTTTTGTTGGAGTCTTGTCGGCTTGTAGCCATGCTGGTCTTGTCAACAAAGGTCAAAGGGTTTTCAATTCAATGAACCATGTCTACGATATAGAACCAAAGGCTCAGCATTATTCCTGCCTTGTAGATATATTAGGCCGAGCAGGACTAGTGGATGAGGCTACAAAGGTAGTACGCATGATGCCTGCTTCTGAGAAGGATGCTGCTGTTCTAGGAGCATTGCTTGGTGCTTATAGGTTCCATGGAGATATTAGAATGGCAAGTCTTATCGGGGAGGCGCTTCAAGAGTTAGAGCCAGGTAGCGCCGGGGGGTATGTACTCTTAGCTACCATCTATGCTGCACGTGGAAAATGGGATGAATTTGCTCGAGTAAGAAAAAAGATGAAGGAGAGGAAAGTGAACAAGGTTCCTGGTTTTAGTCAAATACAAGTGAAGGGCAGGAGTCATGTATTCTATGCAAGGGACAGATCTCATCCTCAAGCTGCTGAGATTTGGGGACTGCTACAAGAGAAGCTCCTACCACACATGTGGGAGATGAGATACTCAAAGTATCGATCACCAGAACAGGAATTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

654

Amino Acids

73.51

Weight (kDa)

7.33

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 139 - 172 7.8e-06 PPR repeat family
PPR_1 PF12854 139 - 167 2.2e-06 PPR repeat
PPR PF01535 142 - 171 1.4e-06 PPR repeat
PPR_2 PF13041 201 - 234 2e-07 PPR repeat family
PPR PF01535 204 - 233 4.4e-06 PPR repeat
PPR_2 PF13041 325 - 372 3e-06 PPR repeat family
PPR_2 PF13041 424 - 471 8.3e-10 PPR repeat family
E_motif PF20431 546 - 604 2.8e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016277)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00100
malus_domestica MD05G1364000.v1.1
prunus_persica Prupe.4G001100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0000131
rosa_laevigata RLG00000030844
rosa_multiflora Rmu_co8477805.1_g000001 Rmu_sc0003125.1_g000003 Rmu_ssc0000243.1_g000018
rosa_roxburghii Rroxscaffold_1G00075970
rosa_rugosa Rorug04G0381800
rosa_samantha Rh5AG000900 Rh5BG002100 Rh5CG001000 Rh5DG000900
rosa_wichuraiana Rw5G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1327
AccB1I GGYRCC 1 cut(s) 204
AccI GTMKAC 2 cut(s) 140, 1467
AccII CGCG 3 cut(s) 548, 550, 574
AciI CCGC 4 cut(s) 36, 178, 462, 945
AclWI GGATC 1 cut(s) 1030
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 3 cut(s) 97, 103, 1742
AcuI CTGAAG 1 cut(s) 1057
AcvI CACGTG 1 cut(s) 1727
AfaI GTAC 3 cut(s) 860, 1557, 1701
AfiI CCNNNNNNNGG 2 cut(s) 615, 1221
AflIII ACRYGT 2 cut(s) 1350, 1908
AhlI ACTAGT 2 cut(s) 1198, 1531
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 4 cut(s) 521, 893, 1678, 1792
AleI CACNNNNGTG 1 cut(s) 1909
AluBI AGCT 8 cut(s) 150, 890, 952, 1110, 1132, 1709, 1865, 1897
AluI AGCT 8 cut(s) 150, 890, 952, 1110, 1132, 1709, 1865, 1897
Alw21I GWGCWC 2 cut(s) 76, 1112
Alw26I GTCTC 2 cut(s) 244, 616
AlwI GGATC 1 cut(s) 1030
Ama87I CYCGRG 1 cut(s) 1749
AoxI GGCC 6 cut(s) 175, 366, 370, 477, 928, 1519
ApeKI GCWGC 5 cut(s) 890, 911, 1586, 1721, 1865
ApoI RAATTY 3 cut(s) 97, 103, 1742
AspLEI GCGC 7 cut(s) 550, 552, 574, 576, 696, 1663, 1688
AspS9I GGNCC 5 cut(s) 119, 175, 432, 478, 1153
AsuC2I CCSGG 2 cut(s) 448, 1690
AsuHPI GGTGA 3 cut(s) 392, 1316, 1932
AsuII TTCGAA 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 1749
AvaII GGWCC 3 cut(s) 119, 432, 1153
BanI GGYRCC 1 cut(s) 204
BanII GRGCYC 1 cut(s) 1112
BbrPI CACGTG 1 cut(s) 1727
BbsI GAAGAC 1 cut(s) 722
Bbv12I GWGCWC 2 cut(s) 76, 1112
BbvI GCAGC 5 cut(s) 877, 923, 1573, 1708, 1852
BccI CCATC 4 cut(s) 767, 998, 1120, 1721
BceAI ACGGC 4 cut(s) 23, 44, 221, 357
BciT130I CCWGG 4 cut(s) 523, 895, 1680, 1794
BclI TGATCA 4 cut(s) 255, 627, 649, 1252
BcnI CCSGG 2 cut(s) 448, 1690
BcoDI GTCTC 2 cut(s) 244, 616
BcuI ACTAGT 2 cut(s) 1198, 1531
BfaI CTAG 5 cut(s) 1098, 1199, 1239, 1532, 1595
BfoI RGCGCY 2 cut(s) 1664, 1689
BfuAI ACCTGC 1 cut(s) 1327
BglI GCCNNNNNGGC 1 cut(s) 183
BglII AGATCT 1 cut(s) 1850
BisI GCNGC 7 cut(s) 178, 891, 912, 945, 1587, 1722, 1866
BlpI GCTNAGC 2 cut(s) 948, 1488
BlsI GCNGC 7 cut(s) 179, 892, 913, 946, 1588, 1723, 1867
BmcAI AGTACT 1 cut(s) 860
Bme1390I CCNGG 6 cut(s) 448, 523, 895, 1680, 1690, 1794
Bme18I GGWCC 3 cut(s) 119, 432, 1153
BmeT110I CYCGRG 1 cut(s) 1749
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 5 cut(s) 119, 175, 432, 478, 1153
BmiI GGNNCC 5 cut(s) 84, 206, 1366, 1622, 1791
BmrFI CCNGG 6 cut(s) 448, 523, 895, 1680, 1690, 1794
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 8 cut(s) 187, 223, 303, 954, 1047, 1286, 1554, 1573
BmuI ACTGGG 1 cut(s) 282
BoxI GACNNNNGTC 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 722
Bpu10I CCTNAGC 1 cut(s) 75
Bpu1102I GCTNAGC 2 cut(s) 948, 1488
Bpu14I TTCGAA 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 1845
BpuMI CCSGG 2 cut(s) 448, 1690
Bsa29I ATCGAT 1 cut(s) 1936
BsaAI YACGTR 2 cut(s) 144, 1727
BsaBI GATNNNNATC 1 cut(s) 648
BsaJI CCNNGG 4 cut(s) 363, 925, 1624, 1689
Bsc4I CCNNNNNNNGG 2 cut(s) 615, 1221
Bse118I RCCGGY 2 cut(s) 116, 368
Bse1I ACTGG 2 cut(s) 288, 1155
Bse3DI GCAATG 4 cut(s) 351, 1296, 1331, 1601
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 4 cut(s) 523, 895, 1680, 1794
BseCI ATCGAT 1 cut(s) 1936
BseDI CCNNGG 4 cut(s) 363, 925, 1624, 1689
BseGI GGATG 5 cut(s) 1231, 1543, 1588, 1744, 1855
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 615, 1221
BseMI GCAATG 4 cut(s) 351, 1296, 1331, 1601
BseMII CTCAG 6 cut(s) 89, 119, 939, 1502, 1566, 1860
BseNI ACTGG 2 cut(s) 288, 1155
BsePI GCGCGC 2 cut(s) 548, 572
BseX3I CGGCCG 1 cut(s) 370
BseXI GCAGC 5 cut(s) 877, 923, 1573, 1708, 1852
BsgI GTGCAG 2 cut(s) 312, 1707
Bsh1236I CGCG 3 cut(s) 548, 550, 574
Bsh1285I CGRYCG 2 cut(s) 111, 373
BshFI GGCC 6 cut(s) 177, 368, 372, 479, 930, 1521
BshNI GGYRCC 1 cut(s) 204
BshVI ATCGAT 1 cut(s) 1936
BsiEI CGRYCG 2 cut(s) 111, 373
BsiHKAI GWGCWC 2 cut(s) 76, 1112
BsiHKCI CYCGRG 1 cut(s) 1749
BsiSI CCGG 4 cut(s) 117, 369, 447, 1689
BslFI GGGAC 3 cut(s) 1099, 1859, 1893
BslI CCNNNNNNNGG 2 cut(s) 615, 1221
BsmAI GTCTC 2 cut(s) 244, 616
BsmBI CGTCTC 2 cut(s) 244, 616
BsmFI GGGAC 3 cut(s) 1099, 1859, 1893
BsmI GAATGC 3 cut(s) 796, 904, 1291
BsnI GGCC 6 cut(s) 177, 368, 372, 479, 930, 1521
BsoBI CYCGRG 1 cut(s) 1749
Bsp119I TTCGAA 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 76, 1112
Bsp1720I GCTNAGC 2 cut(s) 948, 1488
Bsp19I CCATGG 1 cut(s) 1624
BspACI CCGC 4 cut(s) 36, 178, 462, 945
BspANI GGCC 6 cut(s) 177, 368, 372, 479, 930, 1521
BspCNI CTCAG 6 cut(s) 88, 120, 940, 1501, 1567, 1861
BspDI ATCGAT 1 cut(s) 1936
BspFNI CGCG 3 cut(s) 548, 550, 574
BspLI GGNNCC 5 cut(s) 84, 206, 1366, 1622, 1791
BspMI ACCTGC 1 cut(s) 1327
BspPI GGATC 1 cut(s) 1030
BspT104I TTCGAA 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 204
BsrDI GCAATG 4 cut(s) 351, 1296, 1331, 1601
BsrFI RCCGGY 2 cut(s) 116, 368
BsrI ACTGG 2 cut(s) 288, 1155
BssAI RCCGGY 2 cut(s) 116, 368
BssECI CCNNGG 4 cut(s) 363, 925, 1624, 1689
BssHII GCGCGC 2 cut(s) 548, 572
BssNAI GTATAC 1 cut(s) 141
BssT1I CCWWGG 3 cut(s) 363, 925, 1624
Bst1107I GTATAC 1 cut(s) 141
Bst2UI CCWGG 4 cut(s) 523, 895, 1680, 1794
Bst4CI ACNGT 5 cut(s) 60, 158, 610, 622, 1183
Bst6I CTCTTC 2 cut(s) 680, 773
BstBAI YACGTR 2 cut(s) 144, 1727
BstBI TTCGAA 1 cut(s) 101
BstC8I GCNNGC 5 cut(s) 370, 550, 574, 872, 1569
BstDEI CTNAG 9 cut(s) 75, 128, 668, 948, 1259, 1488, 1575, 1705, 1869
BstDSI CCRYGG 1 cut(s) 1624
BstEII GGTNACC 1 cut(s) 1322
BstF5I GGATG 5 cut(s) 1231, 1543, 1588, 1744, 1855
BstFNI CGCG 3 cut(s) 548, 550, 574
BstH2I RGCGCY 2 cut(s) 1664, 1689
BstHHI GCGC 7 cut(s) 550, 552, 574, 576, 696, 1663, 1688
BstMAI GTCTC 2 cut(s) 244, 616
BstMCI CGRYCG 2 cut(s) 111, 373
BstMWI GCNNNNNNNGC 8 cut(s) 183, 341, 746, 755, 848, 899, 908, 944
BstNI CCWGG 4 cut(s) 523, 895, 1680, 1794
BstNSI RCATGY 3 cut(s) 874, 1354, 1912
BstPAI GACNNNNGTC 1 cut(s) 387
BstPI GGTNACC 1 cut(s) 1322
BstSCI CCNGG 6 cut(s) 446, 521, 893, 1678, 1688, 1792
BstSNI TACGTA 1 cut(s) 144
BstUI CGCG 3 cut(s) 548, 550, 574
BstV1I GCAGC 5 cut(s) 877, 923, 1573, 1708, 1852
BstV2I GAAGAC 1 cut(s) 722
BstX2I RGATCY 1 cut(s) 1850
BstXI CCANNNNNNTGG 1 cut(s) 1911
BstYI RGATCY 1 cut(s) 1850
BstZ17I GTATAC 1 cut(s) 141
BstZI CGGCCG 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 1936
BsuRI GGCC 6 cut(s) 177, 368, 372, 479, 930, 1521
BsuTUI ATCGAT 1 cut(s) 1936
BtgI CCRYGG 1 cut(s) 1624
BtgZI GCGATG 1 cut(s) 326
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 5 cut(s) 1231, 1543, 1588, 1744, 1855
BtsIMutI CAGTG 3 cut(s) 295, 1148, 1179
BveI ACCTGC 1 cut(s) 1327
Cac8I GCNNGC 5 cut(s) 370, 550, 574, 872, 1569
CfoI GCGC 7 cut(s) 550, 552, 574, 576, 696, 1663, 1688
Cfr10I RCCGGY 2 cut(s) 116, 368
Cfr13I GGNCC 5 cut(s) 119, 175, 432, 478, 1153
ClaI ATCGAT 1 cut(s) 1936
CseI GACGC 2 cut(s) 237, 392
Csp6I GTAC 3 cut(s) 859, 1556, 1700
CviQI GTAC 3 cut(s) 859, 1556, 1700
DdeI CTNAG 9 cut(s) 75, 128, 668, 948, 1259, 1488, 1575, 1705, 1869
EaeI YGGCCR 1 cut(s) 370
EagI CGGCCG 1 cut(s) 370
Eam1104I CTCTTC 2 cut(s) 680, 773
EarI CTCTTC 2 cut(s) 680, 773
Ecl136II GAGCTC 1 cut(s) 1110
EclXI CGGCCG 1 cut(s) 370
Eco105I TACGTA 1 cut(s) 144
Eco130I CCWWGG 3 cut(s) 363, 925, 1624
Eco147I AGGCCT 1 cut(s) 930
Eco24I GRGCYC 1 cut(s) 1112
Eco32I GATATC 1 cut(s) 444
Eco47I GGWCC 3 cut(s) 119, 432, 1153
Eco52I CGGCCG 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 1110
Eco57I CTGAAG 1 cut(s) 1057
Eco72I CACGTG 1 cut(s) 1727
Eco88I CYCGRG 1 cut(s) 1749
Eco91I GGTNACC 1 cut(s) 1322
EcoICRI GAGCTC 1 cut(s) 1110
EcoO65I GGTNACC 1 cut(s) 1322
EcoRI GAATTC 2 cut(s) 97, 103
EcoRII CCWGG 4 cut(s) 521, 893, 1678, 1792
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 3 cut(s) 363, 925, 1624
EcoT22I ATGCAT 1 cut(s) 1333
EcoT38I GRGCYC 1 cut(s) 1112
ErhI CCWWGG 3 cut(s) 363, 925, 1624
Esp3I CGTCTC 2 cut(s) 244, 616
FaqI GGGAC 3 cut(s) 1099, 1859, 1893
FauI CCCGC 1 cut(s) 43
FauNDI CATATG 2 cut(s) 498, 916
FbaI TGATCA 4 cut(s) 255, 627, 649, 1252
FblI GTMKAC 2 cut(s) 140, 1467
Fnu4HI GCNGC 7 cut(s) 178, 891, 912, 945, 1587, 1722, 1866
FokI GGATG 5 cut(s) 1238, 1550, 1595, 1751, 1842
FriOI GRGCYC 1 cut(s) 1112
FseI GGCCGGCC 1 cut(s) 372
Fsp4HI GCNGC 7 cut(s) 178, 891, 912, 945, 1587, 1722, 1866
FspBI CTAG 5 cut(s) 1098, 1199, 1239, 1532, 1595
GlaI GCGC 7 cut(s) 549, 551, 573, 575, 695, 1662, 1687
GluI GCNGC 7 cut(s) 178, 891, 912, 945, 1587, 1722, 1866
HaeII RGCGCY 2 cut(s) 1664, 1689
HaeIII GGCC 6 cut(s) 177, 368, 372, 479, 930, 1521
HapII CCGG 4 cut(s) 117, 369, 447, 1689
HgaI GACGC 2 cut(s) 237, 392
HhaI GCGC 7 cut(s) 550, 552, 574, 576, 696, 1663, 1688
Hin6I GCGC 7 cut(s) 548, 550, 572, 574, 694, 1661, 1686
HinP1I GCGC 7 cut(s) 548, 550, 572, 574, 694, 1661, 1686
HincII GTYRAC 3 cut(s) 472, 922, 1429
HindII GTYRAC 3 cut(s) 472, 922, 1429
HinfI GANTC 6 cut(s) 338, 535, 773, 991, 1395, 1825
HpaII CCGG 4 cut(s) 117, 369, 447, 1689
HphI GGTGA 3 cut(s) 392, 1316, 1932
Hpy166II GTNNAC 7 cut(s) 141, 265, 472, 922, 1429, 1468, 1783
Hpy188I TCNGA 4 cut(s) 996, 1056, 1076, 1576
Hpy188III TCNNGA 4 cut(s) 122, 1215, 1362, 1667
Hpy8I GTNNAC 7 cut(s) 141, 265, 472, 922, 1429, 1468, 1783
Hpy99I CGWCG 4 cut(s) 30, 218, 486, 560
HpyAV CCTTC 4 cut(s) 29, 1573, 1762, 1810
HpyCH4III ACNGT 5 cut(s) 60, 158, 610, 622, 1183
HpyCH4IV ACGT 4 cut(s) 143, 393, 558, 1726
HpyF10VI GCNNNNNNNGC 8 cut(s) 183, 341, 746, 755, 848, 899, 908, 944
HpyF3I CTNAG 9 cut(s) 75, 128, 668, 948, 1259, 1488, 1575, 1705, 1869
HpySE526I ACGT 4 cut(s) 143, 393, 558, 1726
HspAI GCGC 7 cut(s) 548, 550, 572, 574, 694, 1661, 1686
KroI GCCGGC 1 cut(s) 368
KroNI GCCGGC 1 cut(s) 370
Ksp22I TGATCA 4 cut(s) 255, 627, 649, 1252
LmnI GCTCC 4 cut(s) 82, 1129, 1598, 1902
Lsp1109I GCAGC 5 cut(s) 877, 923, 1573, 1708, 1852
LweI GCATC 8 cut(s) 187, 223, 303, 954, 1047, 1286, 1554, 1573
MaeI CTAG 5 cut(s) 1098, 1199, 1239, 1532, 1595
MaeII ACGT 4 cut(s) 143, 393, 558, 1726
MaeIII GTNAC 9 cut(s) 152, 380, 389, 542, 814, 982, 1201, 1228, 1322
MboII GAAGA 4 cut(s) 667, 722, 760, 1043
MflI RGATCY 1 cut(s) 1850
MhlI GDGCHC 2 cut(s) 76, 1112
MlyI GAGTC 2 cut(s) 1404, 1834
MmeI TCCRAC 1 cut(s) 1372
Mph1103I ATGCAT 1 cut(s) 1333
MroNI GCCGGC 1 cut(s) 368
MseI TTAA 5 cut(s) 269, 585, 1040, 1355, 1960
MslI CAYNNNNRTG 1 cut(s) 1909
MspA1I CMGCKG 2 cut(s) 180, 947
MspI CCGG 4 cut(s) 117, 369, 447, 1689
MspR9I CCNGG 6 cut(s) 448, 523, 895, 1680, 1690, 1794
Mva1269I GAATGC 3 cut(s) 796, 904, 1291
MvaI CCWGG 4 cut(s) 523, 895, 1680, 1794
MvnI CGCG 3 cut(s) 548, 550, 574
MwoI GCNNNNNNNGC 8 cut(s) 183, 341, 746, 755, 848, 899, 908, 944
NaeI GCCGGC 1 cut(s) 370
NciI CCSGG 2 cut(s) 448, 1690
NcoI CCATGG 1 cut(s) 1624
NdeI CATATG 2 cut(s) 498, 916
NgoMIV GCCGGC 1 cut(s) 368
NlaIV GGNNCC 5 cut(s) 84, 206, 1366, 1622, 1791
NmeAIII GCCGAG 1 cut(s) 1547
NmuCI GTSAC 3 cut(s) 380, 389, 1322
NsiI ATGCAT 1 cut(s) 1333
NspI RCATGY 3 cut(s) 874, 1354, 1912
NspV TTCGAA 1 cut(s) 101
OliI CACNNNNGTG 1 cut(s) 1909
PaeI GCATGC 1 cut(s) 874
PaeR7I CTCGAG 1 cut(s) 1749
PauI GCGCGC 2 cut(s) 548, 572
PceI AGGCCT 1 cut(s) 930
PciI ACATGT 2 cut(s) 1350, 1908
PcsI WCGNNNNNNNCGW 2 cut(s) 390, 552
PctI GAATGC 3 cut(s) 796, 904, 1291
PdiI GCCGGC 1 cut(s) 370
PfeI GAWTC 4 cut(s) 338, 535, 773, 991
PfoI TCCNGGA 1 cut(s) 521
PkrI GCNGC 7 cut(s) 179, 892, 913, 946, 1588, 1723, 1867
Ple19I CGATCG 1 cut(s) 111
PleI GAGTC 2 cut(s) 1403, 1833
PmaCI CACGTG 1 cut(s) 1727
PmlI CACGTG 1 cut(s) 1727
PpsI GAGTC 2 cut(s) 1403, 1833
Ppu21I YACGTR 2 cut(s) 144, 1727
PscI ACATGT 2 cut(s) 1350, 1908
PshAI GACNNNNGTC 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 1112
Psp6I CCWGG 4 cut(s) 521, 893, 1678, 1792
PspCI CACGTG 1 cut(s) 1727
PspEI GGTNACC 1 cut(s) 1322
PspGI CCWGG 4 cut(s) 521, 893, 1678, 1792
PspN4I GGNNCC 5 cut(s) 84, 206, 1366, 1622, 1791
PspPI GGNCC 5 cut(s) 119, 175, 432, 478, 1153
PspXI VCTCGAGB 1 cut(s) 1749
PsrI GAACNNNNNNTAC 2 cut(s) 1451, 1483
PsuI RGATCY 1 cut(s) 1850
PteI GCGCGC 2 cut(s) 548, 572
PvuI CGATCG 1 cut(s) 111
RigI GGCCGGCC 1 cut(s) 372
RsaI GTAC 3 cut(s) 860, 1557, 1701
RsaNI GTAC 3 cut(s) 859, 1556, 1700
RseI CAYNNNNRTG 1 cut(s) 1909
SacI GAGCTC 1 cut(s) 1112
SaqAI TTAA 5 cut(s) 269, 585, 1040, 1355, 1960
SatI GCNGC 7 cut(s) 178, 891, 912, 945, 1587, 1722, 1866
Sau96I GGNCC 5 cut(s) 119, 175, 432, 478, 1153
ScaI AGTACT 1 cut(s) 860
SchI GAGTC 2 cut(s) 1404, 1834
ScrFI CCNGG 6 cut(s) 448, 523, 895, 1680, 1690, 1794
SduI GDGCHC 2 cut(s) 76, 1112
SfaNI GCATC 8 cut(s) 187, 223, 303, 954, 1047, 1286, 1554, 1573
Sfr274I CTCGAG 1 cut(s) 1749
SfuI TTCGAA 1 cut(s) 101
SinI GGWCC 3 cut(s) 119, 432, 1153
SlaI CTCGAG 1 cut(s) 1749
SmiMI CAYNNNNRTG 1 cut(s) 1909
SmlI CTYRAG 2 cut(s) 1749, 1860
SmoI CTYRAG 2 cut(s) 1749, 1860
SnaBI TACGTA 1 cut(s) 144
SpeI ACTAGT 2 cut(s) 1198, 1531
SphI GCATGC 1 cut(s) 874
SseBI AGGCCT 1 cut(s) 930
SsiI CCGC 4 cut(s) 36, 178, 462, 945
SspI AATATT 1 cut(s) 328
SspMI CTAG 5 cut(s) 1098, 1199, 1239, 1532, 1595
SstI GAGCTC 1 cut(s) 1112
StuI AGGCCT 1 cut(s) 930
StyD4I CCNGG 6 cut(s) 446, 521, 893, 1678, 1688, 1792
StyI CCWWGG 3 cut(s) 363, 925, 1624
TaaI ACNGT 5 cut(s) 60, 158, 610, 622, 1183
TaiI ACGT 4 cut(s) 146, 396, 561, 1729
TaqI TCGA 8 cut(s) 101, 107, 111, 213, 771, 1063, 1750, 1936
TatI WGTACW 2 cut(s) 858, 1699
TauI GCSGC 2 cut(s) 180, 947
TfiI GAWTC 4 cut(s) 338, 535, 773, 991
Tru1I TTAA 5 cut(s) 269, 585, 1040, 1355, 1960
Tru9I TTAA 5 cut(s) 269, 585, 1040, 1355, 1960
TscAI CASTG 3 cut(s) 295, 1155, 1186
TseFI GTSAC 3 cut(s) 380, 389, 1322
TseI GCWGC 5 cut(s) 890, 911, 1586, 1721, 1865
Tsp45I GTSAC 3 cut(s) 380, 389, 1322
TspDTI ATGAA 5 cut(s) 582, 1392, 1472, 1755, 1781
TspRI CASTG 3 cut(s) 295, 1155, 1186
VpaK11BI GGWCC 3 cut(s) 119, 432, 1153
XapI RAATTY 3 cut(s) 97, 103, 1742
XceI RCATGY 3 cut(s) 874, 1354, 1912
XhoI CTCGAG 1 cut(s) 1749
XmiI GTMKAC 2 cut(s) 140, 1467
XspI CTAG 5 cut(s) 1098, 1199, 1239, 1532, 1595
ZrmI AGTACT 1 cut(s) 860
Zsp2I ATGCAT 1 cut(s) 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.