Rh5BG002100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0016277
Physical Location & Seq
Reverse (-)
248058 .. 250280
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG002100.1

Sequence Viewer

Length: 2004 bp
ATGTCATCCTTTGCTTTCCGTCCCCGTCTTTGGAAGCTTCCCGCCATAGTTCAAACACTAAGACAGTTGAATGCTTCTGCTCAGGTGGAGCCAAACTTGAATTCGATTGAAGCCGGTCGTCGTCGTCGTCGTCGTCGTCAAAAGCCAAACCTGAGTCTTTGGTATAAAAGTGATACATATAGCTGTAACTGTGAGATTATAAATCTGGGGCGCTGTGGCAAAGTGAAAGATGCAAGGAAGCTGTTCGACGATATGCCTCAACGAGATGCTGTCTCTTATGCGTCCATGATCAATGTTTACTTGAAGAACGATGATCTTCCCAATGCACAGAGGCTCTTTCAGGCCATGCCCACCAGTAATATTGTTGCTGAATCTGCAATGGTTAGTGGTTATGTCAAGGCAGGCCGTATAGCTGAGGCTCGTCAAGTTTTTGATCGCATGGAAAACAGAAATGTGTATTCTTGGACCAGTTTGATATCCGGGTATCTCAGTTGCGGACAAGTTGACGAGGCCCGTCGGCTTTTTGGTCGTATGCCTGTCAAAAATGTGGTGTCCTGGACTACTATGATCCTGGGTTACGCTCGCAACAACATGATTGATGAAGCGAGCCGTGTGTTTAACCTTATGCCTGAAAGGAACACAGTCTCATGGACAGTTATGATCAAGGCTCTTATTGAGAATGATCAATTTGATGACGCACTTTGCCTCTTCAATGATATGCCACAACGGAACCTATATTCTTGGAACATCATAATCTTGGGTCTTCTTAATGCAAATAGAGTAAGTGAAGCCATCAAACTCTTCAGTTCAATGCCTCAGAGGAATGCAATTTCTTGGACTACTATGGTTACGGGGTTGGCACATAACAAGATGACTAAACTTGCAAGAGAGTACTTTGATCGGATGCCTAACAAAGATGTAGCTGCCTGGAATGCTATGATTGCATCATATGTTGACGAAGGCCTCATGGCAGAAGCCGGTGAGCTATTCAGTTTCATGCACGAAAGGAATGTTGTTACTTGGAATCTGATGATTGATGGTTATACCAAAAGTGGGCCAAAAGAACAAGCCTTAAAGCACCTAATTCTGATGCTTCGGTTTTGCTTTAGACCTAATGGGACTACCATCGCTAGCGTATTGAGCTCATGCGAGGACATGATGGAGCTAATGCAAGCTCATGCACTGGTCCTATCACATGGGTTTGAGCATGACACAGTCGTTGTGAATACACTAGTCACTATGTATTCCAGAAATGGGGATGTTACTTCTGCTAGGTTTGTTTTTTATCATCTTGGGGCTAAGGATGTGGCATCATGGAATGCAATGATATTAGCATATTCAAATCACGGATATGGTCACCATGCATTGCAGGTCTTCGCACACATGTTAAGATCAGGAGCCAAGCCAGATGACATTACTTTTGTTGGAGTCTTATCAGCTTGTAGTCATGCTGGTCTTGTCAACAAAGGTCAAAGGCTTTTCAATTCAATGAATCATGTTTGTGATATGGAACCAAAGGCCCAGCACTATTCCTGCCTTGTGGACATCTTAGGCCGAGCAGGACTAGTGGATGAGGCTACGAAGGTAGTACGCATGATGCCTGCTTCTGAGAAGGATGCTGCCGTTCTAGGAGCATTGCTTGGTGCTTATAGGTTCCATGGAAATATTACAATGGCAAGTCTTATTGGAGAGGCACTTCAAGAGCTAGAACCAGGTAGATCTGGGGGGTATGTACTCTTAGCTATAATTTATGCTGCACGTGGAAAATGGGATGAATTTGCTCGAGTAAGAAAAAAGATGAAGGAGAGGAATGTGAATAAGGTTCCTGGTTTTAGTCAAATACAAGTGAAGGGCAGGAGTCATGTATTTTTTGTGGGGGACAAATCTCATCCTCAAGCTGCTGAGATTTGGGGACTGCTTCAAGAGAAGCTCCTACCACACATGTGGGAGATGGGATACTCAAAACGGAATGCTTCTCAGATTGATCACCAGAAGAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

667

Amino Acids

75.43

Weight (kDa)

9.35

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 153 - 182 4.4e-07 PPR repeat
PPR_2 PF13041 181 - 213 7.1e-07 PPR repeat family
PPR PF01535 184 - 213 5.6e-07 PPR repeat
PPR_2 PF13041 212 - 245 5.6e-07 PPR repeat family
PPR_2 PF13041 434 - 482 2.9e-10 PPR repeat family
E_motif PF20431 555 - 615 5.3e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016277)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00100
malus_domestica MD05G1364000.v1.1
prunus_persica Prupe.4G001100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0000131
rosa_laevigata RLG00000030844
rosa_multiflora Rmu_co8477805.1_g000001 Rmu_sc0003125.1_g000003 Rmu_ssc0000243.1_g000018
rosa_roxburghii Rroxscaffold_1G00075970
rosa_rugosa Rorug04G0381800
rosa_samantha Rh5AG000900 Rh5BG002100 Rh5CG001000 Rh5DG000900
rosa_wichuraiana Rw5G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
Acc36I ACCTGC 1 cut(s) 1360
AciI CCGC 2 cut(s) 42, 495
AclWI GGATC 1 cut(s) 562
AcsI RAATTY 2 cut(s) 100, 1775
AcuI CTGAAG 1 cut(s) 787
AcvI CACGTG 1 cut(s) 1760
AfaI GTAC 3 cut(s) 893, 1590, 1734
AfiI CCNNNNNNNGG 3 cut(s) 30, 1053, 1254
AflIII ACRYGT 2 cut(s) 1383, 1941
AhlI ACTAGT 2 cut(s) 1231, 1564
AjnI CCWGG 5 cut(s) 554, 570, 926, 1711, 1825
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AleI CACNNNNGTG 1 cut(s) 1942
Alw21I GWGCWC 1 cut(s) 1145
Alw26I GTCTC 2 cut(s) 277, 649
AlwI GGATC 1 cut(s) 562
Ama87I CYCGRG 1 cut(s) 1782
AoxI GGCC 7 cut(s) 342, 403, 510, 961, 1055, 1518, 1552
ApeKI GCWGC 4 cut(s) 923, 1619, 1754, 1898
ApoI RAATTY 2 cut(s) 100, 1775
ArsI GACNNNNNNTTYG 2 cut(s) 1403, 1435
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 5 cut(s) 465, 511, 1055, 1186, 1519
AsuC2I CCSGG 1 cut(s) 481
AsuHPI GGTGA 3 cut(s) 992, 1349, 1979
AsuNHI GCTAGC 1 cut(s) 1130
AvaI CYCGRG 1 cut(s) 1782
AvaII GGWCC 2 cut(s) 465, 1186
BanII GRGCYC 1 cut(s) 1145
BbrPI CACGTG 1 cut(s) 1760
BbsI GAAGAC 2 cut(s) 755, 1366
Bbv12I GWGCWC 1 cut(s) 1145
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 4 cut(s) 910, 1606, 1741, 1885
BccI CCATC 5 cut(s) 800, 1031, 1133, 1153, 1945
BceAI ACGGC 3 cut(s) 390, 594, 1607
BciT130I CCWGG 5 cut(s) 556, 572, 928, 1713, 1827
BciVI GTATCC 1 cut(s) 1949
BclI TGATCA 4 cut(s) 288, 660, 682, 1984
BcnI CCSGG 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 277, 649
BcuI ACTAGT 2 cut(s) 1231, 1564
BfaI CTAG 6 cut(s) 1131, 1232, 1272, 1565, 1628, 1706
BfoI RGCGCY 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 1360
BfuI GTATCC 1 cut(s) 1949
BglII AGATCT 1 cut(s) 1718
BisI GCNGC 4 cut(s) 924, 1620, 1755, 1899
BlsI GCNGC 4 cut(s) 925, 1621, 1756, 1900
BmcAI AGTACT 1 cut(s) 893
Bme1390I CCNGG 6 cut(s) 481, 556, 572, 928, 1713, 1827
Bme18I GGWCC 2 cut(s) 465, 1186
BmeT110I CYCGRG 1 cut(s) 1782
BmgT120I GGNCC 5 cut(s) 465, 511, 1055, 1186, 1519
BmiI GGNNCC 6 cut(s) 90, 731, 1399, 1512, 1655, 1824
BmrFI CCNGG 6 cut(s) 481, 556, 572, 928, 1713, 1827
BmsI GCATC 8 cut(s) 220, 256, 894, 953, 1080, 1319, 1587, 1606
BmtI GCTAGC 1 cut(s) 1134
BpiI GAAGAC 2 cut(s) 755, 1366
Bpu10I CCTNAGC 3 cut(s) 81, 414, 1299
BpuEI CTTGAG 1 cut(s) 1878
BpuMI CCSGG 1 cut(s) 481
BsaAI YACGTR 1 cut(s) 1760
BsaJI CCNNGG 2 cut(s) 571, 1657
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 1053, 1254
Bse118I RCCGGY 2 cut(s) 113, 977
Bse1I ACTGG 3 cut(s) 354, 468, 1188
Bse3DI GCAATG 4 cut(s) 384, 1329, 1364, 1634
BseBI CCWGG 5 cut(s) 556, 572, 928, 1713, 1827
BseDI CCNNGG 2 cut(s) 571, 1657
BseGI GGATG 8 cut(s) 5, 909, 1264, 1309, 1576, 1621, 1777, 1888
BseLI CCNNNNNNNGG 3 cut(s) 30, 1053, 1254
BseMI GCAATG 4 cut(s) 384, 1329, 1364, 1634
BseMII CTCAG 8 cut(s) 95, 143, 405, 502, 830, 1599, 1893, 1991
BseNI ACTGG 3 cut(s) 354, 468, 1188
BseXI GCAGC 4 cut(s) 910, 1606, 1741, 1885
BseYI CCCAGC 1 cut(s) 1521
BsgI GTGCAG 1 cut(s) 1740
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 7 cut(s) 344, 405, 512, 963, 1057, 1520, 1554
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 1145
BsiHKCI CYCGRG 1 cut(s) 1782
BsiSI CCGG 3 cut(s) 114, 480, 978
BslFI GGGAC 4 cut(s) 6, 1132, 1892, 1926
BslI CCNNNNNNNGG 3 cut(s) 30, 1053, 1254
BsmAI GTCTC 2 cut(s) 277, 649
BsmFI GGGAC 4 cut(s) 6, 1132, 1892, 1926
BsmI GAATGC 5 cut(s) 76, 829, 937, 1324, 1975
BsnI GGCC 7 cut(s) 344, 405, 512, 963, 1057, 1520, 1554
BsoBI CYCGRG 1 cut(s) 1782
Bsp1286I GDGCHC 1 cut(s) 1145
Bsp19I CCATGG 1 cut(s) 1657
BspACI CCGC 2 cut(s) 42, 495
BspANI GGCC 7 cut(s) 344, 405, 512, 963, 1057, 1520, 1554
BspCNI CTCAG 8 cut(s) 94, 144, 406, 501, 829, 1600, 1894, 1990
BspLI GGNNCC 6 cut(s) 90, 731, 1399, 1512, 1655, 1824
BspMI ACCTGC 1 cut(s) 1360
BspOI GCTAGC 1 cut(s) 1134
BspPI GGATC 1 cut(s) 562
BsrDI GCAATG 4 cut(s) 384, 1329, 1364, 1634
BsrFI RCCGGY 2 cut(s) 113, 977
BsrI ACTGG 3 cut(s) 354, 468, 1188
BssAI RCCGGY 2 cut(s) 113, 977
BssECI CCNNGG 2 cut(s) 571, 1657
BssT1I CCWWGG 1 cut(s) 1657
Bst2UI CCWGG 5 cut(s) 556, 572, 928, 1713, 1827
Bst4CI ACNGT 5 cut(s) 66, 191, 643, 655, 1216
Bst6I CTCTTC 3 cut(s) 713, 806, 1988
BstBAI YACGTR 1 cut(s) 1760
BstC8I GCNNGC 6 cut(s) 403, 583, 607, 1132, 1173, 1602
BstDSI CCRYGG 1 cut(s) 1657
BstEII GGTNACC 1 cut(s) 1355
BstF5I GGATG 8 cut(s) 5, 909, 1264, 1309, 1576, 1621, 1777, 1888
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 1 cut(s) 213
BstMAI GTCTC 2 cut(s) 277, 649
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 4 cut(s) 374, 932, 941, 1140
BstNI CCWGG 5 cut(s) 556, 572, 928, 1713, 1827
BstNSI RCATGY 2 cut(s) 1387, 1945
BstPI GGTNACC 1 cut(s) 1355
BstSCI CCNGG 6 cut(s) 479, 554, 570, 926, 1711, 1825
BstV1I GCAGC 4 cut(s) 910, 1606, 1741, 1885
BstV2I GAAGAC 2 cut(s) 755, 1366
BstX2I RGATCY 1 cut(s) 1718
BstXI CCANNNNNNTGG 1 cut(s) 1944
BstYI RGATCY 1 cut(s) 1718
BsuI GTATCC 1 cut(s) 1949
BsuRI GGCC 7 cut(s) 344, 405, 512, 963, 1057, 1520, 1554
BtgI CCRYGG 1 cut(s) 1657
BtgZI GCGATG 1 cut(s) 1111
BtsCI GGATG 8 cut(s) 5, 909, 1264, 1309, 1576, 1621, 1777, 1888
BtsIMutI CAGTG 1 cut(s) 1181
BveI ACCTGC 1 cut(s) 1360
Cac8I GCNNGC 6 cut(s) 403, 583, 607, 1132, 1173, 1602
CfoI GCGC 1 cut(s) 213
Cfr10I RCCGGY 2 cut(s) 113, 977
Cfr13I GGNCC 5 cut(s) 465, 511, 1055, 1186, 1519
CseI GACGC 2 cut(s) 270, 704
CsiI ACCWGGT 1 cut(s) 1711
Csp6I GTAC 3 cut(s) 892, 1589, 1733
CviQI GTAC 3 cut(s) 892, 1589, 1733
Eam1104I CTCTTC 3 cut(s) 713, 806, 1988
EarI CTCTTC 3 cut(s) 713, 806, 1988
Ecl136II GAGCTC 1 cut(s) 1143
Eco130I CCWWGG 1 cut(s) 1657
Eco147I AGGCCT 1 cut(s) 963
Eco24I GRGCYC 1 cut(s) 1145
Eco32I GATATC 1 cut(s) 477
Eco47I GGWCC 2 cut(s) 465, 1186
Eco53kI GAGCTC 1 cut(s) 1143
Eco57I CTGAAG 1 cut(s) 787
Eco72I CACGTG 1 cut(s) 1760
Eco88I CYCGRG 1 cut(s) 1782
Eco91I GGTNACC 1 cut(s) 1355
EcoICRI GAGCTC 1 cut(s) 1143
EcoO65I GGTNACC 1 cut(s) 1355
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 5 cut(s) 554, 570, 926, 1711, 1825
EcoRV GATATC 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 1657
EcoT22I ATGCAT 1 cut(s) 1366
EcoT38I GRGCYC 1 cut(s) 1145
ErhI CCWWGG 1 cut(s) 1657
FaqI GGGAC 4 cut(s) 6, 1132, 1892, 1926
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 1 cut(s) 949
FbaI TGATCA 4 cut(s) 288, 660, 682, 1984
Fnu4HI GCNGC 4 cut(s) 924, 1620, 1755, 1899
FokI GGATG 7 cut(s) 916, 1271, 1316, 1583, 1628, 1784, 1875
FriOI GRGCYC 1 cut(s) 1145
Fsp4HI GCNGC 4 cut(s) 924, 1620, 1755, 1899
FspBI CTAG 6 cut(s) 1131, 1232, 1272, 1565, 1628, 1706
GlaI GCGC 1 cut(s) 212
GluI GCNGC 4 cut(s) 924, 1620, 1755, 1899
GsaI CCCAGC 1 cut(s) 1525
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 7 cut(s) 344, 405, 512, 963, 1057, 1520, 1554
HapII CCGG 3 cut(s) 114, 480, 978
HgaI GACGC 2 cut(s) 270, 704
HhaI GCGC 1 cut(s) 213
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HincII GTYRAC 3 cut(s) 505, 955, 1462
HindII GTYRAC 3 cut(s) 505, 955, 1462
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 6 cut(s) 154, 371, 1024, 1428, 1492, 1858
HpaII CCGG 3 cut(s) 114, 480, 978
HphI GGTGA 3 cut(s) 992, 1349, 1979
Hpy166II GTNNAC 5 cut(s) 298, 505, 955, 1462, 1543
Hpy188I TCNGA 6 cut(s) 819, 903, 1029, 1089, 1609, 1980
Hpy188III TCNNGA 4 cut(s) 1248, 1395, 1700, 1922
Hpy8I GTNNAC 5 cut(s) 298, 505, 955, 1462, 1543
Hpy99I CGWCG 8 cut(s) 123, 126, 129, 132, 135, 138, 251, 519
HpyAV CCTTC 5 cut(s) 953, 1576, 1606, 1795, 1843
HpyCH4III ACNGT 5 cut(s) 66, 191, 643, 655, 1216
HpyCH4IV ACGT 1 cut(s) 1759
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 932, 941, 1140
HpySE526I ACGT 1 cut(s) 1759
HspAI GCGC 1 cut(s) 211
Ksp22I TGATCA 4 cut(s) 288, 660, 682, 1984
LmnI GCTCC 5 cut(s) 88, 1162, 1397, 1631, 1935
Lsp1109I GCAGC 4 cut(s) 910, 1606, 1741, 1885
LweI GCATC 8 cut(s) 220, 256, 894, 953, 1080, 1319, 1587, 1606
MabI ACCWGGT 1 cut(s) 1711
MaeI CTAG 6 cut(s) 1131, 1232, 1272, 1565, 1628, 1706
MaeII ACGT 1 cut(s) 1759
MaeIII GTNAC 7 cut(s) 185, 575, 847, 1015, 1234, 1261, 1355
MboII GAAGA 6 cut(s) 308, 316, 700, 755, 793, 1366
MflI RGATCY 1 cut(s) 1718
MhlI GDGCHC 1 cut(s) 1145
MluCI AATT 8 cut(s) 100, 686, 828, 1083, 1483, 1746, 1775, 1999
MlyI GAGTC 3 cut(s) 163, 1437, 1867
MmeI TCCRAC 1 cut(s) 1405
Mph1103I ATGCAT 1 cut(s) 1366
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 4 cut(s) 618, 768, 1073, 1388
MslI CAYNNNNRTG 3 cut(s) 1350, 1500, 1942
MspI CCGG 3 cut(s) 114, 480, 978
MspR9I CCNGG 6 cut(s) 481, 556, 572, 928, 1713, 1827
Mva1269I GAATGC 5 cut(s) 76, 829, 937, 1324, 1975
MvaI CCWGG 5 cut(s) 556, 572, 928, 1713, 1827
MwoI GCNNNNNNNGC 4 cut(s) 374, 932, 941, 1140
NciI CCSGG 1 cut(s) 481
NcoI CCATGG 1 cut(s) 1657
NdeI CATATG 1 cut(s) 949
NheI GCTAGC 1 cut(s) 1130
NlaIV GGNNCC 6 cut(s) 90, 731, 1399, 1512, 1655, 1824
NmeAIII GCCGAG 1 cut(s) 1580
NmuCI GTSAC 2 cut(s) 1234, 1355
NsiI ATGCAT 1 cut(s) 1366
NspI RCATGY 2 cut(s) 1387, 1945
OliI CACNNNNGTG 1 cut(s) 1942
PaeR7I CTCGAG 1 cut(s) 1782
PceI AGGCCT 1 cut(s) 963
PciI ACATGT 2 cut(s) 1383, 1941
PcsI WCGNNNNNNNCGW 4 cut(s) 124, 127, 130, 133
PctI GAATGC 5 cut(s) 76, 829, 937, 1324, 1975
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 371, 1024, 1492
PflFI GACNNNGTC 1 cut(s) 1214
PfoI TCCNGGA 1 cut(s) 554
PkrI GCNGC 4 cut(s) 925, 1621, 1756, 1900
PleI GAGTC 3 cut(s) 162, 1436, 1866
PmaCI CACGTG 1 cut(s) 1760
PmlI CACGTG 1 cut(s) 1760
PpsI GAGTC 3 cut(s) 162, 1436, 1866
Ppu21I YACGTR 1 cut(s) 1760
PscI ACATGT 2 cut(s) 1383, 1941
PsiI TTATAA 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 1145
Psp6I CCWGG 5 cut(s) 554, 570, 926, 1711, 1825
PspCI CACGTG 1 cut(s) 1760
PspEI GGTNACC 1 cut(s) 1355
PspFI CCCAGC 1 cut(s) 1521
PspGI CCWGG 5 cut(s) 554, 570, 926, 1711, 1825
PspN4I GGNNCC 6 cut(s) 90, 731, 1399, 1512, 1655, 1824
PspPI GGNCC 5 cut(s) 465, 511, 1055, 1186, 1519
PspXI VCTCGAGB 1 cut(s) 1782
PsuI RGATCY 1 cut(s) 1718
PsyI GACNNNGTC 1 cut(s) 1214
RsaI GTAC 3 cut(s) 893, 1590, 1734
RsaNI GTAC 3 cut(s) 892, 1589, 1733
RseI CAYNNNNRTG 3 cut(s) 1350, 1500, 1942
SacI GAGCTC 1 cut(s) 1145
SaqAI TTAA 4 cut(s) 618, 768, 1073, 1388
SatI GCNGC 4 cut(s) 924, 1620, 1755, 1899
Sau96I GGNCC 5 cut(s) 465, 511, 1055, 1186, 1519
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 3 cut(s) 163, 1437, 1867
ScrFI CCNGG 6 cut(s) 481, 556, 572, 928, 1713, 1827
SduI GDGCHC 1 cut(s) 1145
SexAI ACCWGGT 1 cut(s) 1711
SfaNI GCATC 8 cut(s) 220, 256, 894, 953, 1080, 1319, 1587, 1606
Sfr274I CTCGAG 1 cut(s) 1782
SinI GGWCC 2 cut(s) 465, 1186
SlaI CTCGAG 1 cut(s) 1782
SmiMI CAYNNNNRTG 3 cut(s) 1350, 1500, 1942
SmlI CTYRAG 2 cut(s) 1782, 1893
SmoI CTYRAG 2 cut(s) 1782, 1893
SpeI ACTAGT 2 cut(s) 1231, 1564
Sse9I AATT 8 cut(s) 100, 686, 828, 1083, 1483, 1746, 1775, 1999
SseBI AGGCCT 1 cut(s) 963
SsiI CCGC 2 cut(s) 42, 495
SspI AATATT 2 cut(s) 361, 1666
SspMI CTAG 6 cut(s) 1131, 1232, 1272, 1565, 1628, 1706
SstI GAGCTC 1 cut(s) 1145
StuI AGGCCT 1 cut(s) 963
StyD4I CCNGG 6 cut(s) 479, 554, 570, 926, 1711, 1825
StyI CCWWGG 1 cut(s) 1657
TaaI ACNGT 5 cut(s) 66, 191, 643, 655, 1216
TaiI ACGT 1 cut(s) 1762
TaqI TCGA 3 cut(s) 104, 246, 1783
TasI AATT 8 cut(s) 100, 686, 828, 1083, 1483, 1746, 1775, 1999
TatI WGTACW 2 cut(s) 891, 1732
TfiI GAWTC 3 cut(s) 371, 1024, 1492
Tru1I TTAA 4 cut(s) 618, 768, 1073, 1388
Tru9I TTAA 4 cut(s) 618, 768, 1073, 1388
TscAI CASTG 1 cut(s) 1188
TseFI GTSAC 2 cut(s) 1234, 1355
TseI GCWGC 4 cut(s) 923, 1619, 1754, 1898
Tsp45I GTSAC 2 cut(s) 1234, 1355
TspDTI ATGAA 5 cut(s) 615, 985, 1505, 1788, 1814
TspGWI ACGGA 4 cut(s) 8, 742, 1362, 1981
TspRI CASTG 1 cut(s) 1188
Tth111I GACNNNGTC 1 cut(s) 1214
VpaK11BI GGWCC 2 cut(s) 465, 1186
XapI RAATTY 2 cut(s) 100, 1775
XceI RCATGY 2 cut(s) 1387, 1945
XhoI CTCGAG 1 cut(s) 1782
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 6 cut(s) 1131, 1232, 1272, 1565, 1628, 1706
ZrmI AGTACT 1 cut(s) 893
Zsp2I ATGCAT 1 cut(s) 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.