Rroxscaffold_1G00075970

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016277
Physical Location & Seq
Forward (+)
96501675 .. 96503405
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075970.1

Sequence Viewer

Length: 1731 bp
ATGTCATCCTTTGCTTTCCGTCCCCGTCTTTGGAAGCTTCCCGCCATAGTTCAAACCCTAAGACAGTTGAATGCTTCTGCTCAGGTGGAGCCAAACTTGAATTCGATTGAAGCCGGTCGTCGTCGTCGTCAAAAGCCAAACCTGAGTCTTTGGTATAAAAGTGATACATATAGCTGTAACTGTGAGATTATAAATCTCGGGCGCTGTGGCAAAGTGAAAGATGCAAGGAAGCTGTTCGACGATATGCCTCAACGAGATGCTGTCTCTTATGCGTCCATGATCAATGTTTACTTGAAGAACGATGATCTTCCCAATGCACAGAGGCTCTTTCAGGCCATGCCCACCAGTAATATTGTTGCTGAATCTGCAATGGTTTGTGGTTATGTCAAGGCAGGCCGTATAGCTGAGGCTCGTCAAGTTTTTGATCGCATGGAAAACAGAAATGTGTATTCTTGGACCAGTTTGATATCCGGGTATCTCAGTTGCGGACAAGTTGACGAGGCCCGTTGGCTTTTTGGTCGTATGCCTGTCAAAAATGTGGTGTCCTGGACTACTATGATCCTGGGTTACGCTCGCAACAGCATGATTGATGAAGCGTGCCGTGTGTTTAACCTTATGCCTGAAAGGAACACAGTCTCATGGACAGTTATGATCAAGGCTCTTATTGAGAATGATCAATTTGATGAGGCACTTAGCCTCTTCAATGATATGCCACAACGGAACCTATATTCTTGGAACATCATAATCTTGGGTCTTCTTAATGCAAATAGAGTAAGTGAAGCCATCGAACTCTTCAGTTCAATGCCTCAGAGGAATGCAATTTCTTGGACTACTATGGTTACGGGCTTGGCACATAACAAGATGACTAAACTTGCAAGAGAGTACTTTGATCGGATGCCTAACAAAGATGTAGCTGCCTGGAATGCTATGATTGCATCATATGTTGACGAAGGCCTCATGGCAGAAGCCAGTGAGCTATTCAGTTTCATGCACGAAAGGAATGTTGTTACTTGGAATCTGATGATTGATGGTTATACCAAAAGTGGGCCAAAAGAACAAGCCTTAAAGCACCTAATTCTGATGCTTCGGTTTTGCTTTAGACCTAATGGGACTACCATCGCTAGCGTATTGAGCTCATGCGAGGACACGATGGAGCTAATGCAAGCTCATGCACTGGTCCTATCACATGGGTTTGAGCATGACACAGTCGTTGTGAATACACTAGTCACTATGTATTCCAAAAATGGGGATGTTACTTCTGCTAGATTTGTTTTTGATCATCTTGGGGCTAAGGATGTGGCATCATGGAATGCAATGATATTAACATATTCAAATCACGGATATGGTCACCATGCATTGCAGGTCTTCGCACACATGTTAAGATCAGGAGCCAAGCCAGATGAAATTACTTTTGTTGGAGTCTTATCAGCTTGTAGTCATGCTGGTCTTGTCAACAAAGGTCAAAGGCTTTTCAATTCAATGAACCATGTTTATGATATAGAACCAAAGGCCCAGCACTATTCCTGCCTTGTGGACATCTTAGGCCGAGCAGGACTAGTGGATGAGGCTATGAAGGTAGTACGCATGATGCCTGCTTCTGAGAAGGATGCTGCTGTTCTAGGAGCATTGCTTGGTGCCTATAGGTTCCATGGAAATATTACAATGGCAAGTCTTATTGGAGAGGCACTTCAAGAGCTAGAGCCAGGTAGCTCTGGGGGTATGTACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

576

Amino Acids

64.67

Weight (kDa)

7.61

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 150 - 179 4.1e-07 PPR repeat
PPR_2 PF13041 178 - 210 1e-06 PPR repeat family
PPR PF01535 181 - 210 6.8e-07 PPR repeat
PPR_2 PF13041 209 - 242 1.3e-07 PPR repeat family
PPR PF01535 212 - 241 2.2e-06 PPR repeat
PPR_long PF17177 410 - 534 4.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 431 - 479 8.2e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016277)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00100
malus_domestica MD05G1364000.v1.1
prunus_persica Prupe.4G001100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0000131
rosa_laevigata RLG00000030844
rosa_multiflora Rmu_co8477805.1_g000001 Rmu_sc0003125.1_g000003 Rmu_ssc0000243.1_g000018
rosa_roxburghii Rroxscaffold_1G00075970
rosa_rugosa Rorug04G0381800
rosa_samantha Rh5AG000900 Rh5BG002100 Rh5CG001000 Rh5DG000900
rosa_wichuraiana Rw5G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 1351
AccB1I GGYRCC 1 cut(s) 1634
AciI CCGC 2 cut(s) 42, 486
AclWI GGATC 1 cut(s) 553
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 778
AfaI GTAC 3 cut(s) 884, 1581, 1724
AfiI CCNNNNNNNGG 3 cut(s) 30, 1044, 1245
AflIII ACRYGT 1 cut(s) 1374
AhlI ACTAGT 2 cut(s) 1222, 1555
AjnI CCWGG 4 cut(s) 545, 561, 917, 1702
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
Alw21I GWGCWC 1 cut(s) 1136
Alw26I GTCTC 2 cut(s) 268, 640
AlwI GGATC 1 cut(s) 553
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 7 cut(s) 333, 394, 501, 952, 1046, 1509, 1543
ApeKI GCWGC 2 cut(s) 914, 1610
ApoI RAATTY 1 cut(s) 100
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 5 cut(s) 456, 502, 1046, 1177, 1510
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 1 cut(s) 1340
AsuNHI GCTAGC 1 cut(s) 1121
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 2 cut(s) 456, 1177
BanI GGYRCC 1 cut(s) 1634
BanII GRGCYC 1 cut(s) 1136
BbsI GAAGAC 2 cut(s) 746, 1357
Bbv12I GWGCWC 1 cut(s) 1136
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 901, 1597
BccI CCATC 4 cut(s) 791, 1022, 1124, 1144
BceAI ACGGC 2 cut(s) 381, 585
BciT130I CCWGG 4 cut(s) 547, 563, 919, 1704
BclI TGATCA 4 cut(s) 279, 651, 673, 1276
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 268, 640
BcuI ACTAGT 2 cut(s) 1222, 1555
BfaI CTAG 6 cut(s) 1122, 1223, 1263, 1556, 1619, 1697
BfmI CTRYAG 1 cut(s) 1639
BfoI RGCGCY 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 1351
BisI GCNGC 2 cut(s) 915, 1611
BlsI GCNGC 2 cut(s) 916, 1612
BmcAI AGTACT 1 cut(s) 884
Bme1390I CCNGG 5 cut(s) 472, 547, 563, 919, 1704
Bme18I GGWCC 2 cut(s) 456, 1177
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 5 cut(s) 456, 502, 1046, 1177, 1510
BmiI GGNNCC 5 cut(s) 90, 722, 1390, 1636, 1646
BmrFI CCNGG 5 cut(s) 472, 547, 563, 919, 1704
BmsI GCATC 8 cut(s) 211, 247, 885, 944, 1071, 1310, 1578, 1597
BmtI GCTAGC 1 cut(s) 1125
BpiI GAAGAC 2 cut(s) 746, 1357
Bpu10I CCTNAGC 3 cut(s) 81, 405, 1290
BpuMI CCSGG 1 cut(s) 472
BsaJI CCNNGG 2 cut(s) 562, 1648
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 1044, 1245
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 4 cut(s) 345, 459, 969, 1179
Bse3DI GCAATG 4 cut(s) 375, 1320, 1355, 1625
BseBI CCWGG 4 cut(s) 547, 563, 919, 1704
BseDI CCNNGG 2 cut(s) 562, 1648
BseGI GGATG 6 cut(s) 5, 900, 1255, 1300, 1567, 1612
BseLI CCNNNNNNNGG 3 cut(s) 30, 1044, 1245
BseMI GCAATG 4 cut(s) 375, 1320, 1355, 1625
BseMII CTCAG 6 cut(s) 95, 134, 396, 493, 821, 1590
BseNI ACTGG 4 cut(s) 345, 459, 969, 1179
BseXI GCAGC 2 cut(s) 901, 1597
BseYI CCCAGC 1 cut(s) 1512
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 7 cut(s) 335, 396, 503, 954, 1048, 1511, 1545
BshNI GGYRCC 1 cut(s) 1634
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 1136
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 2 cut(s) 114, 471
BslFI GGGAC 2 cut(s) 6, 1123
BslI CCNNNNNNNGG 3 cut(s) 30, 1044, 1245
BsmAI GTCTC 2 cut(s) 268, 640
BsmFI GGGAC 2 cut(s) 6, 1123
BsmI GAATGC 4 cut(s) 76, 820, 928, 1315
BsnI GGCC 7 cut(s) 335, 396, 503, 954, 1048, 1511, 1545
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 1136
Bsp143I GATC 9 cut(s) 279, 304, 424, 558, 651, 673, 889, 1276, 1382
Bsp19I CCATGG 1 cut(s) 1648
BspACI CCGC 2 cut(s) 42, 486
BspANI GGCC 7 cut(s) 335, 396, 503, 954, 1048, 1511, 1545
BspCNI CTCAG 6 cut(s) 94, 135, 397, 492, 820, 1591
BspLI GGNNCC 5 cut(s) 90, 722, 1390, 1636, 1646
BspMI ACCTGC 1 cut(s) 1351
BspOI GCTAGC 1 cut(s) 1125
BspPI GGATC 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 1634
BsrDI GCAATG 4 cut(s) 375, 1320, 1355, 1625
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 4 cut(s) 345, 459, 969, 1179
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 562, 1648
BssMI GATC 9 cut(s) 279, 304, 424, 558, 651, 673, 889, 1276, 1382
BssT1I CCWWGG 1 cut(s) 1648
Bst2UI CCWGG 4 cut(s) 547, 563, 919, 1704
Bst4CI ACNGT 5 cut(s) 66, 182, 634, 646, 1207
Bst6I CTCTTC 2 cut(s) 704, 797
BstC8I GCNNGC 6 cut(s) 394, 574, 598, 1123, 1164, 1593
BstDSI CCRYGG 1 cut(s) 1648
BstEII GGTNACC 1 cut(s) 1346
BstF5I GGATG 6 cut(s) 5, 900, 1255, 1300, 1567, 1612
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 9 cut(s) 282, 307, 427, 561, 654, 676, 892, 1279, 1385
BstMAI GTCTC 2 cut(s) 268, 640
BstMBI GATC 9 cut(s) 279, 304, 424, 558, 651, 673, 889, 1276, 1382
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 4 cut(s) 365, 923, 932, 1131
BstNI CCWGG 4 cut(s) 547, 563, 919, 1704
BstNSI RCATGY 1 cut(s) 1378
BstPI GGTNACC 1 cut(s) 1346
BstSCI CCNGG 5 cut(s) 470, 545, 561, 917, 1702
BstSFI CTRYAG 1 cut(s) 1639
BstV1I GCAGC 2 cut(s) 901, 1597
BstV2I GAAGAC 2 cut(s) 746, 1357
BsuRI GGCC 7 cut(s) 335, 396, 503, 954, 1048, 1511, 1545
BtgI CCRYGG 1 cut(s) 1648
BtgZI GCGATG 1 cut(s) 1102
BtsCI GGATG 6 cut(s) 5, 900, 1255, 1300, 1567, 1612
BtsIMutI CAGTG 2 cut(s) 976, 1172
BveI ACCTGC 1 cut(s) 1351
Cac8I GCNNGC 6 cut(s) 394, 574, 598, 1123, 1164, 1593
CfoI GCGC 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 5 cut(s) 456, 502, 1046, 1177, 1510
CseI GACGC 1 cut(s) 261
Csp6I GTAC 3 cut(s) 883, 1580, 1723
CviQI GTAC 3 cut(s) 883, 1580, 1723
DpnI GATC 9 cut(s) 281, 306, 426, 560, 653, 675, 891, 1278, 1384
DpnII GATC 9 cut(s) 279, 304, 424, 558, 651, 673, 889, 1276, 1382
Eam1104I CTCTTC 2 cut(s) 704, 797
EarI CTCTTC 2 cut(s) 704, 797
Ecl136II GAGCTC 1 cut(s) 1134
Eco130I CCWWGG 1 cut(s) 1648
Eco147I AGGCCT 1 cut(s) 954
Eco24I GRGCYC 1 cut(s) 1136
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 2 cut(s) 456, 1177
Eco53kI GAGCTC 1 cut(s) 1134
Eco57I CTGAAG 1 cut(s) 778
Eco88I CYCGRG 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 1346
EcoICRI GAGCTC 1 cut(s) 1134
EcoO65I GGTNACC 1 cut(s) 1346
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 4 cut(s) 545, 561, 917, 1702
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 1648
EcoT22I ATGCAT 1 cut(s) 1357
EcoT38I GRGCYC 1 cut(s) 1136
ErhI CCWWGG 1 cut(s) 1648
FaqI GGGAC 2 cut(s) 6, 1123
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 1 cut(s) 940
FbaI TGATCA 4 cut(s) 279, 651, 673, 1276
Fnu4HI GCNGC 2 cut(s) 915, 1611
FokI GGATG 5 cut(s) 907, 1262, 1307, 1574, 1619
FriOI GRGCYC 1 cut(s) 1136
Fsp4HI GCNGC 2 cut(s) 915, 1611
FspBI CTAG 6 cut(s) 1122, 1223, 1263, 1556, 1619, 1697
GlaI GCGC 1 cut(s) 203
GluI GCNGC 2 cut(s) 915, 1611
GsaI CCCAGC 1 cut(s) 1516
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 7 cut(s) 335, 396, 503, 954, 1048, 1511, 1545
HapII CCGG 2 cut(s) 114, 471
HgaI GACGC 1 cut(s) 261
HhaI GCGC 1 cut(s) 204
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 3 cut(s) 496, 946, 1453
HindII GTYRAC 3 cut(s) 496, 946, 1453
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 4 cut(s) 145, 362, 1015, 1419
HpaII CCGG 2 cut(s) 114, 471
HphI GGTGA 1 cut(s) 1340
Hpy166II GTNNAC 5 cut(s) 289, 496, 946, 1453, 1534
Hpy188I TCNGA 5 cut(s) 810, 894, 1020, 1080, 1600
Hpy188III TCNNGA 2 cut(s) 1386, 1691
Hpy8I GTNNAC 5 cut(s) 289, 496, 946, 1453, 1534
Hpy99I CGWCG 4 cut(s) 123, 126, 129, 242
HpyAV CCTTC 3 cut(s) 944, 1567, 1597
HpyCH4III ACNGT 5 cut(s) 66, 182, 634, 646, 1207
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 923, 932, 1131
HspAI GCGC 1 cut(s) 202
Ksp22I TGATCA 4 cut(s) 279, 651, 673, 1276
Kzo9I GATC 9 cut(s) 279, 304, 424, 558, 651, 673, 889, 1276, 1382
LmnI GCTCC 4 cut(s) 88, 1153, 1388, 1622
Lsp1109I GCAGC 2 cut(s) 901, 1597
LweI GCATC 8 cut(s) 211, 247, 885, 944, 1071, 1310, 1578, 1597
MaeI CTAG 6 cut(s) 1122, 1223, 1263, 1556, 1619, 1697
MaeIII GTNAC 7 cut(s) 176, 566, 838, 1006, 1225, 1252, 1346
MalI GATC 9 cut(s) 281, 306, 426, 560, 653, 675, 891, 1278, 1384
MboI GATC 9 cut(s) 279, 304, 424, 558, 651, 673, 889, 1276, 1382
MboII GAAGA 6 cut(s) 299, 307, 691, 746, 784, 1357
MhlI GDGCHC 1 cut(s) 1136
MluCI AATT 6 cut(s) 100, 677, 819, 1074, 1404, 1474
MlyI GAGTC 2 cut(s) 154, 1428
MmeI TCCRAC 1 cut(s) 1396
Mph1103I ATGCAT 1 cut(s) 1357
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 5 cut(s) 609, 759, 1064, 1322, 1379
MslI CAYNNNNRTG 2 cut(s) 1341, 1491
MspI CCGG 2 cut(s) 114, 471
MspR9I CCNGG 5 cut(s) 472, 547, 563, 919, 1704
Mva1269I GAATGC 4 cut(s) 76, 820, 928, 1315
MvaI CCWGG 4 cut(s) 547, 563, 919, 1704
MwoI GCNNNNNNNGC 4 cut(s) 365, 923, 932, 1131
NciI CCSGG 1 cut(s) 472
NcoI CCATGG 1 cut(s) 1648
NdeI CATATG 1 cut(s) 940
NdeII GATC 9 cut(s) 279, 304, 424, 558, 651, 673, 889, 1276, 1382
NheI GCTAGC 1 cut(s) 1121
NlaIV GGNNCC 5 cut(s) 90, 722, 1390, 1636, 1646
NmeAIII GCCGAG 1 cut(s) 1571
NmuCI GTSAC 2 cut(s) 1225, 1346
NsiI ATGCAT 1 cut(s) 1357
NspI RCATGY 1 cut(s) 1378
PceI AGGCCT 1 cut(s) 954
PciI ACATGT 1 cut(s) 1374
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PctI GAATGC 4 cut(s) 76, 820, 928, 1315
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 362, 1015
PflFI GACNNNGTC 1 cut(s) 1205
PfoI TCCNGGA 1 cut(s) 545
PkrI GCNGC 2 cut(s) 916, 1612
PleI GAGTC 2 cut(s) 153, 1427
PpsI GAGTC 2 cut(s) 153, 1427
PscI ACATGT 1 cut(s) 1374
PsiI TTATAA 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 1136
Psp6I CCWGG 4 cut(s) 545, 561, 917, 1702
PspEI GGTNACC 1 cut(s) 1346
PspFI CCCAGC 1 cut(s) 1512
PspGI CCWGG 4 cut(s) 545, 561, 917, 1702
PspN4I GGNNCC 5 cut(s) 90, 722, 1390, 1636, 1646
PspPI GGNCC 5 cut(s) 456, 502, 1046, 1177, 1510
PsyI GACNNNGTC 1 cut(s) 1205
RsaI GTAC 3 cut(s) 884, 1581, 1724
RsaNI GTAC 3 cut(s) 883, 1580, 1723
RseI CAYNNNNRTG 2 cut(s) 1341, 1491
SacI GAGCTC 1 cut(s) 1136
SaqAI TTAA 5 cut(s) 609, 759, 1064, 1322, 1379
SatI GCNGC 2 cut(s) 915, 1611
Sau3AI GATC 9 cut(s) 279, 304, 424, 558, 651, 673, 889, 1276, 1382
Sau96I GGNCC 5 cut(s) 456, 502, 1046, 1177, 1510
ScaI AGTACT 1 cut(s) 884
SchI GAGTC 2 cut(s) 154, 1428
ScrFI CCNGG 5 cut(s) 472, 547, 563, 919, 1704
SduI GDGCHC 1 cut(s) 1136
SfaNI GCATC 8 cut(s) 211, 247, 885, 944, 1071, 1310, 1578, 1597
SfcI CTRYAG 1 cut(s) 1639
SinI GGWCC 2 cut(s) 456, 1177
SmiMI CAYNNNNRTG 2 cut(s) 1341, 1491
SpeI ACTAGT 2 cut(s) 1222, 1555
Sse9I AATT 6 cut(s) 100, 677, 819, 1074, 1404, 1474
SseBI AGGCCT 1 cut(s) 954
SsiI CCGC 2 cut(s) 42, 486
SspI AATATT 2 cut(s) 352, 1657
SspMI CTAG 6 cut(s) 1122, 1223, 1263, 1556, 1619, 1697
SstI GAGCTC 1 cut(s) 1136
StuI AGGCCT 1 cut(s) 954
StyD4I CCNGG 5 cut(s) 470, 545, 561, 917, 1702
StyI CCWWGG 1 cut(s) 1648
TaaI ACNGT 5 cut(s) 66, 182, 634, 646, 1207
TaqI TCGA 3 cut(s) 104, 237, 786
TasI AATT 6 cut(s) 100, 677, 819, 1074, 1404, 1474
TatI WGTACW 2 cut(s) 882, 1722
TfiI GAWTC 2 cut(s) 362, 1015
Tru1I TTAA 5 cut(s) 609, 759, 1064, 1322, 1379
Tru9I TTAA 5 cut(s) 609, 759, 1064, 1322, 1379
TscAI CASTG 2 cut(s) 976, 1179
TseFI GTSAC 2 cut(s) 1225, 1346
TseI GCWGC 2 cut(s) 914, 1610
Tsp45I GTSAC 2 cut(s) 1225, 1346
TspDTI ATGAA 5 cut(s) 606, 976, 1416, 1496, 1586
TspGWI ACGGA 3 cut(s) 8, 733, 1353
TspRI CASTG 2 cut(s) 976, 1179
Tth111I GACNNNGTC 1 cut(s) 1205
VpaK11BI GGWCC 2 cut(s) 456, 1177
XapI RAATTY 1 cut(s) 100
XceI RCATGY 1 cut(s) 1378
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 6 cut(s) 1122, 1223, 1263, 1556, 1619, 1697
ZrmI AGTACT 1 cut(s) 884
Zsp2I ATGCAT 1 cut(s) 1357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.