RLG00000030844

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
156741 .. 158735
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030844

Sequence Viewer

Length: 1791 bp
ATGTCATCCTTTGCTTGCCGTCCCCGTCTTTGGAAGCTTCCCGCCATAGTTCAAACCTTAAGACAGTTGAATGCTTCTGCTCAGGTGGAGCCAAACTTGAATTCTATTGAAGCCGGTCGTCGTCGTCGTCAAAACCCAAACCTGATTCTTTGGTATAAAAGTGATACATATAGCTGTAACTGTGAGATTATAAATCTCGGGCGCTGTGGCAAAGTGAAAGATGCAAGGAAGCTGTTCGACGATATGCCTCAACGAGATGCTGTCTCTTATGCGTCCATGATCAATGTTTACTTGAAGAACGATGATCTTCCCAATGCACAGAGGCTCTTTCAGGCCATGCCCACCAGTAATATTGTTGCTGAATCTGCAATGGTTAGTGGTTATGTCAAGGCAGGCCGTATAGCTGAGGCTCGTCAAGTTTTTGATCGCATGGAAAACAGAAATGTGTATTCTTGGACCAGTTTGATATCCGGGTATCTCAGTTGCGGACAAGTTGACGAGGCCCGTCGGCTTTTTGGTCGTATGCCTGTCAAAAATGTGGTGTCCTGGACTACTATGATCCTGGGTTACGCTCGCAACAACATGATTGATGAAGCGTGCCGTGTGTTTAACCTTATGCCTGAAAGGAACACAGTCTCATGGACAGTTATGATCAAGGCTCTTATTGAGAATGATCAATTTGATGACGCACTTAGCCTCTTCAATGATATGCCACAACGGAACCTATATTCTTGGAACATCATAATCTTGGGTCTTCTTAATGCAAATAGAGTAAGTGAAGCCATCAAACTCTTCAGTTCAATGCCTCAGAGGAATGCAATTTCTTGGACTACTATGGTTACGGGGTTGGCACATAACAAGATGACTAAACTTGCAAGACAGTACTTTGATCGAATGCCTAACAAAGATGTAGCTGCCTGGAATGCTATGATTGCATCATATGTTGACGAAGGCCTCATGGCAGAAGCCGGTGAGCTATTCAGTCTCATGCACGAAAGGAATGTTGTTACTTGGTATCTGATGATTGATGGTTATACCAAAAGTGGGCCAAAAGAACAAGCCTTAAAGCACCTAATTCTGATGCTTCGGTTTTGCTTTAGACCTTATGGGACTACCATCGCTAGCGTATTGAGCTCATGCGAGGACATGATGGAGCTAATGCAAGCTCATGCACTGGTCCTATCACATGGGTTTGAGCATGACACAGTCGTTGTGAATACACTAGTCACTATGTATTCCAGAAATGGGGATATTACTTCTGCTAGGTTTGTTTTTGATCATCTTGGGGCTAAGGATGTGGCATCATGGAATGCAATGATATTAGCATATTCAAATCACGGATATGGTCACCATGCATTGCAGGTCTTCTCACACATGTTAAGATCAGGAGCCAAGCCAGATGAAATTACTTTTGTTGGAGTCTTATCAGCTTGTAGTCATGCTGGTCTTGTCAACAAAGGTCAAAGGCTTTTCAATTCAATGAACCATGTTTATGATATAGAACCAAAGGCCCAGCACTATTCCTGCCTTGTGGACATCTTAGGCCGAGCAGGACTAGTGGATGAGGCTACGAAGGTAGTACGCATGATGCCTGCTTCTGAGAAGGATGCTGCTGTTCTAGGAGCATTGCTTGGTGCTTATAGGAGTCATGTATTTTTTGTGGGGGACAAATCTCATCCTCAAGCTGCTGAGATTTGGGGACTGCTTCAAGAGAAGCTCCTACCACACATGTGGGAGATGGGATACTCAAAACGGAATGCATCTCAGATTGATCACCAGAAGAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

597

Amino Acids

67.42

Weight (kDa)

8.83

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 147 - 180 1e-05 PPR repeat family
PPR PF01535 150 - 179 3.8e-07 PPR repeat
PPR_2 PF13041 178 - 210 2.3e-07 PPR repeat family
PPR_1 PF12854 179 - 206 7.6e-06 PPR repeat
PPR PF01535 181 - 210 2.9e-07 PPR repeat
PPR_2 PF13041 209 - 242 2.3e-07 PPR repeat family
PPR PF01535 212 - 241 8.6e-06 PPR repeat
PPR_2 PF13041 431 - 479 9.5e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016277)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 1351
AciI CCGC 2 cut(s) 42, 486
AclWI GGATC 1 cut(s) 553
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 778
AfaI GTAC 2 cut(s) 884, 1581
AfiI CCNNNNNNNGG 3 cut(s) 30, 1044, 1245
AflII CTTAAG 1 cut(s) 58
AflIII ACRYGT 2 cut(s) 1374, 1728
AhlI ACTAGT 2 cut(s) 1222, 1555
AjnI CCWGG 3 cut(s) 545, 561, 917
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AleI CACNNNNGTG 1 cut(s) 1729
Alw21I GWGCWC 1 cut(s) 1136
Alw26I GTCTC 3 cut(s) 268, 640, 989
AlwI GGATC 1 cut(s) 553
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 7 cut(s) 333, 394, 501, 952, 1046, 1509, 1543
ApeKI GCWGC 3 cut(s) 914, 1610, 1685
ApoI RAATTY 1 cut(s) 100
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 5 cut(s) 456, 502, 1046, 1177, 1510
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 3 cut(s) 983, 1340, 1766
AsuNHI GCTAGC 1 cut(s) 1121
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 2 cut(s) 456, 1177
BanII GRGCYC 1 cut(s) 1136
BbsI GAAGAC 2 cut(s) 746, 1357
Bbv12I GWGCWC 1 cut(s) 1136
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 3 cut(s) 901, 1597, 1672
BccI CCATC 5 cut(s) 791, 1022, 1124, 1144, 1732
BceAI ACGGC 3 cut(s) 3, 381, 585
BciT130I CCWGG 3 cut(s) 547, 563, 919
BciVI GTATCC 1 cut(s) 1736
BclI TGATCA 5 cut(s) 279, 651, 673, 1276, 1771
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 3 cut(s) 268, 640, 989
BcuI ACTAGT 2 cut(s) 1222, 1555
BfaI CTAG 5 cut(s) 1122, 1223, 1263, 1556, 1619
BfoI RGCGCY 1 cut(s) 205
BfrI CTTAAG 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 1351
BfuI GTATCC 1 cut(s) 1736
BisI GCNGC 3 cut(s) 915, 1611, 1686
BlsI GCNGC 3 cut(s) 916, 1612, 1687
BmcAI AGTACT 1 cut(s) 884
Bme1390I CCNGG 4 cut(s) 472, 547, 563, 919
Bme18I GGWCC 2 cut(s) 456, 1177
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 5 cut(s) 456, 502, 1046, 1177, 1510
BmiI GGNNCC 3 cut(s) 90, 722, 1390
BmrFI CCNGG 4 cut(s) 472, 547, 563, 919
BmsI GCATC 8 cut(s) 211, 247, 944, 1071, 1310, 1578, 1597, 1769
BmtI GCTAGC 1 cut(s) 1125
BpiI GAAGAC 2 cut(s) 746, 1357
Bpu10I CCTNAGC 3 cut(s) 81, 405, 1290
BpuEI CTTGAG 1 cut(s) 1665
BpuMI CCSGG 1 cut(s) 472
BsaJI CCNNGG 1 cut(s) 562
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 1044, 1245
Bse118I RCCGGY 2 cut(s) 113, 968
Bse1I ACTGG 3 cut(s) 345, 459, 1179
Bse3DI GCAATG 4 cut(s) 375, 1320, 1355, 1625
BseBI CCWGG 3 cut(s) 547, 563, 919
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 5 cut(s) 5, 1300, 1567, 1612, 1675
BseLI CCNNNNNNNGG 3 cut(s) 30, 1044, 1245
BseMI GCAATG 4 cut(s) 375, 1320, 1355, 1625
BseMII CTCAG 7 cut(s) 95, 396, 493, 821, 1590, 1680, 1778
BseNI ACTGG 3 cut(s) 345, 459, 1179
BseXI GCAGC 3 cut(s) 901, 1597, 1672
BseYI CCCAGC 1 cut(s) 1512
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 7 cut(s) 335, 396, 503, 954, 1048, 1511, 1545
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 1136
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 3 cut(s) 114, 471, 969
BslFI GGGAC 4 cut(s) 6, 1123, 1679, 1713
BslI CCNNNNNNNGG 3 cut(s) 30, 1044, 1245
BsmAI GTCTC 3 cut(s) 268, 640, 989
BsmFI GGGAC 4 cut(s) 6, 1123, 1679, 1713
BsmI GAATGC 6 cut(s) 76, 820, 900, 928, 1315, 1762
BsnI GGCC 7 cut(s) 335, 396, 503, 954, 1048, 1511, 1545
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 1136
BspACI CCGC 2 cut(s) 42, 486
BspANI GGCC 7 cut(s) 335, 396, 503, 954, 1048, 1511, 1545
BspCNI CTCAG 7 cut(s) 94, 397, 492, 820, 1591, 1681, 1777
BspLI GGNNCC 3 cut(s) 90, 722, 1390
BspMI ACCTGC 1 cut(s) 1351
BspOI GCTAGC 1 cut(s) 1125
BspPI GGATC 1 cut(s) 553
BspTI CTTAAG 1 cut(s) 58
BsrDI GCAATG 4 cut(s) 375, 1320, 1355, 1625
BsrFI RCCGGY 2 cut(s) 113, 968
BsrI ACTGG 3 cut(s) 345, 459, 1179
BssAI RCCGGY 2 cut(s) 113, 968
BssECI CCNNGG 1 cut(s) 562
Bst2UI CCWGG 3 cut(s) 547, 563, 919
Bst4CI ACNGT 6 cut(s) 66, 182, 634, 646, 882, 1207
Bst6I CTCTTC 3 cut(s) 704, 797, 1775
BstAFI CTTAAG 1 cut(s) 58
BstC8I GCNNGC 7 cut(s) 16, 394, 574, 598, 1123, 1164, 1593
BstEII GGTNACC 1 cut(s) 1346
BstF5I GGATG 5 cut(s) 5, 1300, 1567, 1612, 1675
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstMAI GTCTC 3 cut(s) 268, 640, 989
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 4 cut(s) 365, 923, 932, 1131
BstNI CCWGG 3 cut(s) 547, 563, 919
BstNSI RCATGY 2 cut(s) 1378, 1732
BstPI GGTNACC 1 cut(s) 1346
BstSCI CCNGG 4 cut(s) 470, 545, 561, 917
BstV1I GCAGC 3 cut(s) 901, 1597, 1672
BstV2I GAAGAC 2 cut(s) 746, 1357
BstXI CCANNNNNNTGG 1 cut(s) 1731
BsuI GTATCC 1 cut(s) 1736
BsuRI GGCC 7 cut(s) 335, 396, 503, 954, 1048, 1511, 1545
BtgZI GCGATG 1 cut(s) 1102
BtsCI GGATG 5 cut(s) 5, 1300, 1567, 1612, 1675
BtsIMutI CAGTG 1 cut(s) 1172
BveI ACCTGC 1 cut(s) 1351
Cac8I GCNNGC 7 cut(s) 16, 394, 574, 598, 1123, 1164, 1593
CfoI GCGC 1 cut(s) 204
Cfr10I RCCGGY 2 cut(s) 113, 968
Cfr13I GGNCC 5 cut(s) 456, 502, 1046, 1177, 1510
CseI GACGC 2 cut(s) 261, 695
Csp6I GTAC 2 cut(s) 883, 1580
CviQI GTAC 2 cut(s) 883, 1580
Eam1104I CTCTTC 3 cut(s) 704, 797, 1775
EarI CTCTTC 3 cut(s) 704, 797, 1775
Ecl136II GAGCTC 1 cut(s) 1134
Eco147I AGGCCT 1 cut(s) 954
Eco24I GRGCYC 1 cut(s) 1136
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 2 cut(s) 456, 1177
Eco53kI GAGCTC 1 cut(s) 1134
Eco57I CTGAAG 1 cut(s) 778
Eco88I CYCGRG 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 1346
EcoICRI GAGCTC 1 cut(s) 1134
EcoO65I GGTNACC 1 cut(s) 1346
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 3 cut(s) 545, 561, 917
EcoRV GATATC 1 cut(s) 468
EcoT22I ATGCAT 2 cut(s) 1357, 1762
EcoT38I GRGCYC 1 cut(s) 1136
FaqI GGGAC 4 cut(s) 6, 1123, 1679, 1713
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 1 cut(s) 940
FbaI TGATCA 5 cut(s) 279, 651, 673, 1276, 1771
Fnu4HI GCNGC 3 cut(s) 915, 1611, 1686
FokI GGATG 4 cut(s) 1307, 1574, 1619, 1662
FriOI GRGCYC 1 cut(s) 1136
Fsp4HI GCNGC 3 cut(s) 915, 1611, 1686
FspBI CTAG 5 cut(s) 1122, 1223, 1263, 1556, 1619
GlaI GCGC 1 cut(s) 203
GluI GCNGC 3 cut(s) 915, 1611, 1686
GsaI CCCAGC 1 cut(s) 1516
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 7 cut(s) 335, 396, 503, 954, 1048, 1511, 1545
HapII CCGG 3 cut(s) 114, 471, 969
HgaI GACGC 2 cut(s) 261, 695
HhaI GCGC 1 cut(s) 204
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 3 cut(s) 496, 946, 1453
HindII GTYRAC 3 cut(s) 496, 946, 1453
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 4 cut(s) 145, 362, 1419, 1645
HpaII CCGG 3 cut(s) 114, 471, 969
HphI GGTGA 3 cut(s) 983, 1340, 1766
Hpy166II GTNNAC 5 cut(s) 289, 496, 946, 1453, 1534
Hpy188I TCNGA 5 cut(s) 810, 1020, 1080, 1600, 1767
Hpy188III TCNNGA 3 cut(s) 1239, 1386, 1709
Hpy8I GTNNAC 5 cut(s) 289, 496, 946, 1453, 1534
Hpy99I CGWCG 5 cut(s) 123, 126, 129, 242, 510
HpyAV CCTTC 3 cut(s) 944, 1567, 1597
HpyCH4III ACNGT 6 cut(s) 66, 182, 634, 646, 882, 1207
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 923, 932, 1131
HspAI GCGC 1 cut(s) 202
Ksp22I TGATCA 5 cut(s) 279, 651, 673, 1276, 1771
LmnI GCTCC 5 cut(s) 88, 1153, 1388, 1622, 1722
Lsp1109I GCAGC 3 cut(s) 901, 1597, 1672
LweI GCATC 8 cut(s) 211, 247, 944, 1071, 1310, 1578, 1597, 1769
MaeI CTAG 5 cut(s) 1122, 1223, 1263, 1556, 1619
MaeIII GTNAC 6 cut(s) 176, 566, 838, 1006, 1225, 1346
MboII GAAGA 6 cut(s) 299, 307, 691, 746, 784, 1357
MhlI GDGCHC 1 cut(s) 1136
MluCI AATT 7 cut(s) 100, 677, 819, 1074, 1404, 1474, 1786
MlyI GAGTC 2 cut(s) 1428, 1654
MmeI TCCRAC 1 cut(s) 1396
Mph1103I ATGCAT 2 cut(s) 1357, 1762
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 5 cut(s) 59, 609, 759, 1064, 1379
MslI CAYNNNNRTG 3 cut(s) 1341, 1491, 1729
MspCI CTTAAG 1 cut(s) 58
MspI CCGG 3 cut(s) 114, 471, 969
MspR9I CCNGG 4 cut(s) 472, 547, 563, 919
Mva1269I GAATGC 6 cut(s) 76, 820, 900, 928, 1315, 1762
MvaI CCWGG 3 cut(s) 547, 563, 919
MwoI GCNNNNNNNGC 4 cut(s) 365, 923, 932, 1131
NciI CCSGG 1 cut(s) 472
NdeI CATATG 1 cut(s) 940
NheI GCTAGC 1 cut(s) 1121
NlaIV GGNNCC 3 cut(s) 90, 722, 1390
NmeAIII GCCGAG 1 cut(s) 1571
NmuCI GTSAC 2 cut(s) 1225, 1346
NsiI ATGCAT 2 cut(s) 1357, 1762
NspI RCATGY 2 cut(s) 1378, 1732
OliI CACNNNNGTG 1 cut(s) 1729
PceI AGGCCT 1 cut(s) 954
PciI ACATGT 2 cut(s) 1374, 1728
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PctI GAATGC 6 cut(s) 76, 820, 900, 928, 1315, 1762
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 145, 362
PflFI GACNNNGTC 1 cut(s) 1205
PfoI TCCNGGA 1 cut(s) 545
PkrI GCNGC 3 cut(s) 916, 1612, 1687
PleI GAGTC 2 cut(s) 1427, 1653
PpsI GAGTC 2 cut(s) 1427, 1653
PscI ACATGT 2 cut(s) 1374, 1728
PsiI TTATAA 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 1136
Psp6I CCWGG 3 cut(s) 545, 561, 917
PspEI GGTNACC 1 cut(s) 1346
PspFI CCCAGC 1 cut(s) 1512
PspGI CCWGG 3 cut(s) 545, 561, 917
PspN4I GGNNCC 3 cut(s) 90, 722, 1390
PspPI GGNCC 5 cut(s) 456, 502, 1046, 1177, 1510
PsyI GACNNNGTC 1 cut(s) 1205
RsaI GTAC 2 cut(s) 884, 1581
RsaNI GTAC 2 cut(s) 883, 1580
RseI CAYNNNNRTG 3 cut(s) 1341, 1491, 1729
SacI GAGCTC 1 cut(s) 1136
SaqAI TTAA 5 cut(s) 59, 609, 759, 1064, 1379
SatI GCNGC 3 cut(s) 915, 1611, 1686
Sau96I GGNCC 5 cut(s) 456, 502, 1046, 1177, 1510
ScaI AGTACT 1 cut(s) 884
SchI GAGTC 2 cut(s) 1428, 1654
ScrFI CCNGG 4 cut(s) 472, 547, 563, 919
SduI GDGCHC 1 cut(s) 1136
SfaNI GCATC 8 cut(s) 211, 247, 944, 1071, 1310, 1578, 1597, 1769
SinI GGWCC 2 cut(s) 456, 1177
SmiMI CAYNNNNRTG 3 cut(s) 1341, 1491, 1729
SmlI CTYRAG 2 cut(s) 58, 1680
SmoI CTYRAG 2 cut(s) 58, 1680
SpeI ACTAGT 2 cut(s) 1222, 1555
Sse9I AATT 7 cut(s) 100, 677, 819, 1074, 1404, 1474, 1786
SseBI AGGCCT 1 cut(s) 954
SsiI CCGC 2 cut(s) 42, 486
SspI AATATT 1 cut(s) 352
SspMI CTAG 5 cut(s) 1122, 1223, 1263, 1556, 1619
SstI GAGCTC 1 cut(s) 1136
StuI AGGCCT 1 cut(s) 954
StyD4I CCNGG 4 cut(s) 470, 545, 561, 917
TaaI ACNGT 6 cut(s) 66, 182, 634, 646, 882, 1207
TaqI TCGA 2 cut(s) 237, 892
TasI AATT 7 cut(s) 100, 677, 819, 1074, 1404, 1474, 1786
TatI WGTACW 1 cut(s) 882
TfiI GAWTC 2 cut(s) 145, 362
Tru1I TTAA 5 cut(s) 59, 609, 759, 1064, 1379
Tru9I TTAA 5 cut(s) 59, 609, 759, 1064, 1379
TscAI CASTG 1 cut(s) 1179
TseFI GTSAC 2 cut(s) 1225, 1346
TseI GCWGC 3 cut(s) 914, 1610, 1685
Tsp45I GTSAC 2 cut(s) 1225, 1346
TspDTI ATGAA 3 cut(s) 606, 1416, 1496
TspGWI ACGGA 3 cut(s) 733, 1353, 1768
TspRI CASTG 1 cut(s) 1179
Tth111I GACNNNGTC 1 cut(s) 1205
Vha464I CTTAAG 1 cut(s) 58
VpaK11BI GGWCC 2 cut(s) 456, 1177
XapI RAATTY 1 cut(s) 100
XceI RCATGY 2 cut(s) 1378, 1732
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 5 cut(s) 1122, 1223, 1263, 1556, 1619
ZrmI AGTACT 1 cut(s) 884
Zsp2I ATGCAT 2 cut(s) 1357, 1762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.