Prupe.4G001100_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016277
Physical Location & Seq
Reverse (-)
127819 .. 131556
3738 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G001100.1

Sequence Viewer

Length: 2010 bp
ATGATCATGCCATCCTCCGTTTGCCGTCTCCATCTTTCAAAGCTTTCCGCCATAGTTCGAACCCTCGGCCATTTCAATGCTTCTTCTCTGGCACAACCGAATTTGGAATTGCTTCAAGGCTGTCTCCGAAGGCCAAATCCGATTCCAGCCCTATCGAAAGCATTTAATGTATACAGCTGTAACTTTGAGATAACAAATCTCGGCCGCTATGGCAAAGTCAAAGAAGCAAGGAATCTGTTCGACCAAATGCCTGAACGGGACGCTGTTTCTTATGCTTCCATGATTAATGTTTACTTGAAGAACCACGATCTTCCCAATGCAGAGAAGCTCTTCCAGACGATGCCCACAAGTAGTCTTGTTGCTGAATCTTCAATGATTAACGGCTATGTGAAAGCCGGCCATATAGATGAGGCTCGTAAAGTTTTTGATCGCATGGAAAACAGAAATGTGTACTCTTGGACCAGTTTGATTTCTGGGTACTTCAGTTGCGGACAAGTTGAGGAGGGTCGCCGGCTTTTTAATCAAATGCCTGTCAAAAATGTGGTCTCCTGGACTACTGTGCTTCTGGGTTATGTCCGCAACAGCATGATTGATGAAGCTCGCCATGTTTTTGACCTTATCCCTGAAAGGAACACCGTCTCGTGTACCGTTATGATCAAGGCTTTTGTTGGGAATGATCAATTAGATGAGGCACTTGATCTCTTCCATAATATGCCGCAACGTAACCTATATACTTGGAATATCATGCTCTCAGGTTATCTAAATGCGAATAGAGTAAGTGAAGCCATTGAACTCTTTAATTCAATGCCTCAAAGGAACGCAATATCTTGGACAACTATGGTTACAGGTCTGGCAGACAACAATATGGTTGAACTTGCCAGGGGGTACTTCGATCGGATGCCTAACAAAGATGTAGCCGCTTGGAATGCTATGATCACATCATATGTTCACGAAGGCCTCATGACAGAAGCTAGTGAGCTGTTCTATTTGATGCGGGAAAGGAATATTGTTACTTGGAATGTGATGATTGGTGGTTATGCCAAAAGTGGGTCCAGAGGGGAAGCCTTAAAGCACGTAATTCTCATGCTTCGGTTTTGCTTTAGGCCTAATGCAACTACCATCACTAGCGTATTGAGCTCATGTGAGGGCATGATGGAGCTCATGCAAGCTCATGTACTGGTCATATCTCATGGGTTTGATCATGAGACATTAGTTGCAAATGTTCTTGTTACTATGTATTCCAGGAATGGAGATGTTACCTCTGCTAGGCTTGTTTTTGAGCATCTTGGGGCTAAGGATGCGGTATCATGGACTGCAATGATATTAGCATATTCAAACCATGGATATGGTCACTATGCATTACAGGTCTTTGCATGCATGCTACGATCAGGAGCCAAGCCAGACGAGATTACTTTTGTTGGAGTCTTATCAGCTTGTAATCATGCTGGTCTTGTCGAGAAGGGTCAAAGGCTTTTCAATTCAATGAATCTTGGTTATGATTTGAAACCAAATGGCCAGCACTATTCCTGCCTTGTAGACATCTTAGGCCGAGCAGGATTGGTGGATGAGGCTACACGGGTGGTATGCGAAGAAATGCCTGCTTGTGAGCAGGATGCTGCTGTTCTAGGGGCATTGCTTGGTGCATATAGGTTGCACGGTGGTGATGTTAGAATGGCAAATCGTATAGGTAAGGAGCTACTAGAGTTAGAGCCAGCCAGCTCAGGGGCTTATGTACTCTTAGCTAACGTGTATGCTGCACATGGGAAGTGGGAAGAATTTGCTCAAGTAAGAAAGAAGATGAAGGAGAGAAGAGTGAAGAAAGTTCCTGGTTTTAGTCAAATAGAAGTGAAGGGCAGGAGCCATATATTTTTTGCTGGGGACAGATCTCATCCTCAGGCCGCTGAGATTTATGGACTGCTACAAGAGAAGCTTCTACCACAAATTTGTGAGATGGGATACTCAAAAGGCAACTCATCTTTCTTCTGTAGCCACCAAATAAGTGAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

670

Amino Acids

74.88

Weight (kDa)

7.6

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016277)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00100
malus_domestica MD05G1364000.v1.1
prunus_persica Prupe.4G001100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0000131
rosa_laevigata RLG00000030844
rosa_multiflora Rmu_co8477805.1_g000001 Rmu_sc0003125.1_g000003 Rmu_ssc0000243.1_g000018
rosa_roxburghii Rroxscaffold_1G00075970
rosa_rugosa Rorug04G0381800
rosa_samantha Rh5AG000900 Rh5BG002100 Rh5CG001000 Rh5DG000900
rosa_wichuraiana Rw5G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 171, 1536
AciI CCGC 9 cut(s) 48, 205, 489, 577, 716, 918, 994, 1301, 1899
AcoI YGGCCR 4 cut(s) 67, 202, 397, 1513
AcsI RAATTY 3 cut(s) 100, 1775, 1941
AcuI CTGAAG 1 cut(s) 466
AfaI GTAC 6 cut(s) 452, 479, 646, 887, 1176, 1734
AfiI CCNNNNNNNGG 3 cut(s) 1047, 1266, 1722
AflIII ACRYGT 1 cut(s) 1746
AjnI CCWGG 4 cut(s) 548, 878, 1241, 1825
AleI CACNNNNGTG 1 cut(s) 1659
Alw21I GWGCWC 2 cut(s) 1139, 1161
Alw26I GTCTC 5 cut(s) 32, 128, 550, 643, 1199
AoxI GGCC 9 cut(s) 67, 131, 202, 397, 955, 1103, 1513, 1546, 1896
ApeKI GCWGC 2 cut(s) 1616, 1754
ApoI RAATTY 3 cut(s) 100, 1775, 1941
ArsI GACNNNNNNTTYG 2 cut(s) 528, 560
AseI ATTAAT 1 cut(s) 285
Asp700I GAANNNNTTC 3 cut(s) 111, 236, 329
AspS9I GGNCC 2 cut(s) 459, 1050
AsuHPI GGTGA 1 cut(s) 1673
AsuII TTCGAA 1 cut(s) 58
AvaII GGWCC 2 cut(s) 459, 1050
AxyI CCTNAGG 1 cut(s) 1893
BaeI ACNNNNGTAYC 2 cut(s) 469, 502
BalI TGGCCA 1 cut(s) 1515
BanII GRGCYC 2 cut(s) 1139, 1161
BauI CACGAG 1 cut(s) 640
Bbv12I GWGCWC 2 cut(s) 1139, 1161
BbvI GCAGC 2 cut(s) 1603, 1741
BccI CCATC 5 cut(s) 19, 39, 1127, 1147, 1945
BceAI ACGGC 2 cut(s) 9, 397
BciT130I CCWGG 4 cut(s) 550, 880, 1243, 1827
BciVI GTATCC 1 cut(s) 1949
BclI TGATCA 5 cut(s) 3, 654, 676, 933, 1198
BcoDI GTCTC 5 cut(s) 32, 128, 550, 643, 1199
BfaI CTAG 5 cut(s) 972, 1125, 1266, 1625, 1700
BfmI CTRYAG 1 cut(s) 1984
BfuI GTATCC 1 cut(s) 1949
BglI GCCNNNNNGGC 1 cut(s) 210
BglII AGATCT 1 cut(s) 1883
BisI GCNGC 6 cut(s) 205, 716, 918, 1617, 1755, 1899
BlsI GCNGC 6 cut(s) 206, 717, 919, 1618, 1756, 1900
Bme1390I CCNGG 4 cut(s) 550, 880, 1243, 1827
Bme18I GGWCC 2 cut(s) 459, 1050
BmgT120I GGNCC 2 cut(s) 459, 1050
BmiI GGNNCC 3 cut(s) 1051, 1393, 1859
BmrFI CCNGG 4 cut(s) 550, 880, 1243, 1827
BmsI GCATC 6 cut(s) 330, 888, 981, 1288, 1291, 1603
Bpu10I CCTNAGC 2 cut(s) 1293, 1720
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 1767
BsaAI YACGTR 1 cut(s) 1075
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 3 cut(s) 64, 879, 1339
Bsc4I CCNNNNNNNGG 3 cut(s) 1047, 1266, 1722
Bse118I RCCGGY 2 cut(s) 395, 510
Bse1I ACTGG 2 cut(s) 462, 1182
Bse21I CCTNAGG 1 cut(s) 1893
Bse3DI GCAATG 2 cut(s) 1323, 1631
BseBI CCWGG 4 cut(s) 550, 880, 1243, 1827
BseDI CCNNGG 3 cut(s) 64, 879, 1339
BseGI GGATG 6 cut(s) 11, 903, 1303, 1570, 1618, 1888
BseLI CCNNNNNNNGG 3 cut(s) 1047, 1266, 1722
BseMI GCAATG 2 cut(s) 1323, 1631
BseMII CTCAG 4 cut(s) 765, 1734, 1893, 1907
BseNI ACTGG 2 cut(s) 462, 1182
BseRI GAGGAG 1 cut(s) 515
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 1603, 1741
BseYI CCCAGC 1 cut(s) 1874
BsgI GTGCAG 1 cut(s) 1740
Bsh1285I CGRYCG 2 cut(s) 205, 895
BshFI GGCC 9 cut(s) 69, 133, 204, 399, 957, 1105, 1515, 1548, 1898
BsiEI CGRYCG 2 cut(s) 205, 895
BsiHKAI GWGCWC 2 cut(s) 1139, 1161
BsiSI CCGG 2 cut(s) 396, 511
BslFI GGGAC 2 cut(s) 272, 1892
BslI CCNNNNNNNGG 3 cut(s) 1047, 1266, 1722
BsmAI GTCTC 5 cut(s) 32, 128, 550, 643, 1199
BsmBI CGTCTC 2 cut(s) 32, 643
BsmFI GGGAC 2 cut(s) 272, 1892
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 9 cut(s) 69, 133, 204, 399, 957, 1105, 1515, 1548, 1898
Bso31I GGTCTC 1 cut(s) 550
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 1139, 1161
Bsp19I CCATGG 1 cut(s) 1339
BspACI CCGC 9 cut(s) 48, 205, 489, 577, 716, 918, 994, 1301, 1899
BspANI GGCC 9 cut(s) 69, 133, 204, 399, 957, 1105, 1515, 1548, 1898
BspCNI CTCAG 4 cut(s) 764, 1733, 1894, 1906
BspHI TCATGA 2 cut(s) 960, 1201
BspLI GGNNCC 3 cut(s) 1051, 1393, 1859
BspQI GCTCTTC 1 cut(s) 335
BspT104I TTCGAA 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 550
BsrDI GCAATG 2 cut(s) 1323, 1631
BsrFI RCCGGY 2 cut(s) 395, 510
BsrI ACTGG 2 cut(s) 462, 1182
BssAI RCCGGY 2 cut(s) 395, 510
BssECI CCNNGG 3 cut(s) 64, 879, 1339
BssNAI GTATAC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 640
BssT1I CCWWGG 1 cut(s) 1339
Bst1107I GTATAC 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 640
Bst2UI CCWGG 4 cut(s) 550, 880, 1243, 1827
Bst4CI ACNGT 4 cut(s) 559, 637, 649, 1658
Bst6I CTCTTC 3 cut(s) 335, 707, 1804
BstBAI YACGTR 1 cut(s) 1075
BstBI TTCGAA 1 cut(s) 58
BstDEI CTNAG 7 cut(s) 751, 1293, 1543, 1720, 1738, 1893, 1902
BstDSI CCRYGG 1 cut(s) 1339
BstENI CCTNNNNNAGG 1 cut(s) 1264
BstF5I GGATG 6 cut(s) 11, 903, 1303, 1570, 1618, 1888
BstMAI GTCTC 5 cut(s) 32, 128, 550, 643, 1199
BstMCI CGRYCG 2 cut(s) 205, 895
BstMWI GCNNNNNNNGC 4 cut(s) 210, 926, 1134, 1298
BstNI CCWGG 4 cut(s) 550, 880, 1243, 1827
BstNSI RCATGY 2 cut(s) 1377, 1381
BstSCI CCNGG 4 cut(s) 548, 878, 1241, 1825
BstSFI CTRYAG 1 cut(s) 1984
BstV1I GCAGC 2 cut(s) 1603, 1741
BstX2I RGATCY 1 cut(s) 1883
BstXI CCANNNNNNTGG 1 cut(s) 1346
BstYI RGATCY 1 cut(s) 1883
BstZ17I GTATAC 1 cut(s) 172
BstZI CGGCCG 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 1893
BsuI GTATCC 1 cut(s) 1949
BsuRI GGCC 9 cut(s) 69, 133, 204, 399, 957, 1105, 1515, 1548, 1898
BtgI CCRYGG 1 cut(s) 1339
BtsCI GGATG 6 cut(s) 11, 903, 1303, 1570, 1618, 1888
CciI TCATGA 2 cut(s) 960, 1201
Cfr10I RCCGGY 2 cut(s) 395, 510
Cfr13I GGNCC 2 cut(s) 459, 1050
CseI GACGC 1 cut(s) 269
Csp6I GTAC 6 cut(s) 451, 478, 645, 886, 1175, 1733
CviQI GTAC 6 cut(s) 451, 478, 645, 886, 1175, 1733
DdeI CTNAG 7 cut(s) 751, 1293, 1543, 1720, 1738, 1893, 1902
EaeI YGGCCR 4 cut(s) 67, 202, 397, 1513
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 3 cut(s) 335, 707, 1804
EarI CTCTTC 3 cut(s) 335, 707, 1804
EciI GGCGGA 1 cut(s) 37
Ecl136II GAGCTC 2 cut(s) 1137, 1159
EclXI CGGCCG 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 1339
Eco147I AGGCCT 2 cut(s) 957, 1105
Eco24I GRGCYC 2 cut(s) 1139, 1161
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 459, 1050
Eco52I CGGCCG 1 cut(s) 202
Eco53kI GAGCTC 2 cut(s) 1137, 1159
Eco57I CTGAAG 1 cut(s) 466
Eco81I CCTNAGG 1 cut(s) 1893
EcoICRI GAGCTC 2 cut(s) 1137, 1159
EcoNI CCTNNNNNAGG 1 cut(s) 1264
EcoRII CCWGG 4 cut(s) 548, 878, 1241, 1825
EcoT14I CCWWGG 1 cut(s) 1339
EcoT22I ATGCAT 2 cut(s) 1360, 1379
EcoT38I GRGCYC 2 cut(s) 1139, 1161
ErhI CCWWGG 1 cut(s) 1339
Esp3I CGTCTC 2 cut(s) 32, 643
FalI AAGNNNNNCTT 2 cut(s) 1914, 1946
FaqI GGGAC 2 cut(s) 272, 1892
FauI CCCGC 1 cut(s) 987
FauNDI CATATG 1 cut(s) 943
FbaI TGATCA 5 cut(s) 3, 654, 676, 933, 1198
FblI GTMKAC 2 cut(s) 171, 1536
Fnu4HI GCNGC 6 cut(s) 205, 716, 918, 1617, 1755, 1899
FokI GGATG 5 cut(s) 910, 1310, 1577, 1625, 1875
FriOI GRGCYC 2 cut(s) 1139, 1161
Fsp4HI GCNGC 6 cut(s) 205, 716, 918, 1617, 1755, 1899
FspBI CTAG 5 cut(s) 972, 1125, 1266, 1625, 1700
GluI GCNGC 6 cut(s) 205, 716, 918, 1617, 1755, 1899
GsaI CCCAGC 1 cut(s) 1878
HaeIII GGCC 9 cut(s) 69, 133, 204, 399, 957, 1105, 1515, 1548, 1898
HapII CCGG 2 cut(s) 396, 511
HgaI GACGC 1 cut(s) 269
HindIII AAGCTT 2 cut(s) 41, 1928
HinfI GANTC 6 cut(s) 142, 232, 365, 1422, 1486, 2003
HpaII CCGG 2 cut(s) 396, 511
HphI GGTGA 1 cut(s) 1673
Hpy166II GTNNAC 6 cut(s) 172, 292, 451, 645, 949, 1537
Hpy188I TCNGA 3 cut(s) 128, 141, 897
Hpy188III TCNNGA 7 cut(s) 334, 950, 961, 1053, 1202, 1389, 1456
Hpy8I GTNNAC 6 cut(s) 172, 292, 451, 645, 949, 1537
HpyAV CCTTC 5 cut(s) 123, 947, 1453, 1795, 1843
HpyCH4III ACNGT 4 cut(s) 559, 637, 649, 1658
HpyCH4IV ACGT 3 cut(s) 721, 1074, 1746
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 926, 1134, 1298
HpyF3I CTNAG 7 cut(s) 751, 1293, 1543, 1720, 1738, 1893, 1902
HpySE526I ACGT 3 cut(s) 721, 1074, 1746
KroI GCCGGC 2 cut(s) 395, 510
KroNI GCCGGC 2 cut(s) 397, 512
Ksp22I TGATCA 5 cut(s) 3, 654, 676, 933, 1198
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 4 cut(s) 1156, 1391, 1693, 1857
Lsp1109I GCAGC 2 cut(s) 1603, 1741
LweI GCATC 6 cut(s) 330, 888, 981, 1288, 1291, 1603
MaeI CTAG 5 cut(s) 972, 1125, 1266, 1625, 1700
MaeII ACGT 3 cut(s) 721, 1074, 1746
MaeIII GTNAC 7 cut(s) 179, 722, 841, 1009, 1228, 1255, 1349
MflI RGATCY 1 cut(s) 1883
MhlI GDGCHC 2 cut(s) 1139, 1161
MlsI TGGCCA 1 cut(s) 1515
MluCI AATT 8 cut(s) 100, 107, 680, 799, 1077, 1477, 1775, 1941
MluNI TGGCCA 1 cut(s) 1515
MlyI GAGTC 1 cut(s) 1431
MmeI TCCRAC 1 cut(s) 1399
Mox20I TGGCCA 1 cut(s) 1515
Mph1103I ATGCAT 2 cut(s) 1360, 1379
MroNI GCCGGC 2 cut(s) 395, 510
MroXI GAANNNNTTC 3 cut(s) 111, 236, 329
MscI TGGCCA 1 cut(s) 1515
MseI TTAA 6 cut(s) 165, 285, 378, 519, 798, 1067
MslI CAYNNNNRTG 4 cut(s) 75, 405, 1344, 1659
Msp20I TGGCCA 1 cut(s) 1515
MspA1I CMGCKG 2 cut(s) 177, 1901
MspI CCGG 2 cut(s) 396, 511
MspR9I CCNGG 4 cut(s) 550, 880, 1243, 1827
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 4 cut(s) 550, 880, 1243, 1827
MwoI GCNNNNNNNGC 4 cut(s) 210, 926, 1134, 1298
NaeI GCCGGC 2 cut(s) 397, 512
NcoI CCATGG 1 cut(s) 1339
NdeI CATATG 1 cut(s) 943
NgoMIV GCCGGC 2 cut(s) 395, 510
NlaIV GGNNCC 3 cut(s) 1051, 1393, 1859
NmeAIII GCCGAG 3 cut(s) 45, 180, 1574
NmuCI GTSAC 1 cut(s) 1349
NsiI ATGCAT 2 cut(s) 1360, 1379
NspI RCATGY 2 cut(s) 1377, 1381
NspV TTCGAA 1 cut(s) 58
OliI CACNNNNGTG 1 cut(s) 1659
PaeI GCATGC 2 cut(s) 1377, 1381
PagI TCATGA 2 cut(s) 960, 1201
PceI AGGCCT 2 cut(s) 957, 1105
PciSI GCTCTTC 1 cut(s) 335
PctI GAATGC 1 cut(s) 931
PdiI GCCGGC 2 cut(s) 397, 512
PdmI GAANNNNTTC 3 cut(s) 111, 236, 329
PfeI GAWTC 5 cut(s) 142, 232, 365, 1486, 2003
PfoI TCCNGGA 2 cut(s) 548, 1241
PkrI GCNGC 6 cut(s) 206, 717, 919, 1618, 1756, 1900
Ple19I CGATCG 1 cut(s) 895
PleI GAGTC 1 cut(s) 1430
PpsI GAGTC 1 cut(s) 1430
Ppu21I YACGTR 1 cut(s) 1075
PshBI ATTAAT 1 cut(s) 285
Psp124BI GAGCTC 2 cut(s) 1139, 1161
Psp6I CCWGG 4 cut(s) 548, 878, 1241, 1825
PspFI CCCAGC 1 cut(s) 1874
PspGI CCWGG 4 cut(s) 548, 878, 1241, 1825
PspN4I GGNNCC 3 cut(s) 1051, 1393, 1859
PspPI GGNCC 2 cut(s) 459, 1050
PsuI RGATCY 1 cut(s) 1883
PvuI CGATCG 1 cut(s) 895
PvuII CAGCTG 1 cut(s) 177
RsaI GTAC 6 cut(s) 452, 479, 646, 887, 1176, 1734
RsaNI GTAC 6 cut(s) 451, 478, 645, 886, 1175, 1733
RseI CAYNNNNRTG 4 cut(s) 75, 405, 1344, 1659
SacI GAGCTC 2 cut(s) 1139, 1161
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 6 cut(s) 165, 285, 378, 519, 798, 1067
SatI GCNGC 6 cut(s) 205, 716, 918, 1617, 1755, 1899
Sau96I GGNCC 2 cut(s) 459, 1050
SchI GAGTC 1 cut(s) 1431
ScrFI CCNGG 4 cut(s) 550, 880, 1243, 1827
SduI GDGCHC 2 cut(s) 1139, 1161
SfaNI GCATC 6 cut(s) 330, 888, 981, 1288, 1291, 1603
SfcI CTRYAG 1 cut(s) 1984
SfuI TTCGAA 1 cut(s) 58
SinI GGWCC 2 cut(s) 459, 1050
SmiMI CAYNNNNRTG 4 cut(s) 75, 405, 1344, 1659
SmlI CTYRAG 1 cut(s) 1782
SmoI CTYRAG 1 cut(s) 1782
SphI GCATGC 2 cut(s) 1377, 1381
Sse9I AATT 8 cut(s) 100, 107, 680, 799, 1077, 1477, 1775, 1941
SseBI AGGCCT 2 cut(s) 957, 1105
SsiI CCGC 9 cut(s) 48, 205, 489, 577, 716, 918, 994, 1301, 1899
SspI AATATT 1 cut(s) 1006
SspMI CTAG 5 cut(s) 972, 1125, 1266, 1625, 1700
SstI GAGCTC 2 cut(s) 1139, 1161
StuI AGGCCT 2 cut(s) 957, 1105
StyD4I CCNGG 4 cut(s) 548, 878, 1241, 1825
StyI CCWWGG 1 cut(s) 1339
TaaI ACNGT 4 cut(s) 559, 637, 649, 1658
TaiI ACGT 3 cut(s) 724, 1077, 1749
TaqI TCGA 5 cut(s) 58, 155, 240, 891, 1455
TasI AATT 8 cut(s) 100, 107, 680, 799, 1077, 1477, 1775, 1941
TatI WGTACW 3 cut(s) 450, 1174, 1732
TauI GCSGC 4 cut(s) 207, 718, 920, 1901
TfiI GAWTC 5 cut(s) 142, 232, 365, 1486, 2003
Tru1I TTAA 6 cut(s) 165, 285, 378, 519, 798, 1067
Tru9I TTAA 6 cut(s) 165, 285, 378, 519, 798, 1067
TseFI GTSAC 1 cut(s) 1349
TseI GCWGC 2 cut(s) 1616, 1754
Tsp45I GTSAC 1 cut(s) 1349
TspDTI ATGAA 3 cut(s) 609, 1499, 1814
TspGWI ACGGA 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 459, 1050
VspI ATTAAT 1 cut(s) 285
XagI CCTNNNNNAGG 1 cut(s) 1264
XapI RAATTY 3 cut(s) 100, 1775, 1941
XceI RCATGY 2 cut(s) 1377, 1381
XmiI GTMKAC 2 cut(s) 171, 1536
XmnI GAANNNNTTC 3 cut(s) 111, 236, 329
XspI CTAG 5 cut(s) 972, 1125, 1266, 1625, 1700
Zsp2I ATGCAT 2 cut(s) 1360, 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.