Rorug04G0381800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016277
Physical Location & Seq
Reverse (-)
55244609 .. 55246938
2330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0381800.1

Sequence Viewer

Length: 1542 bp
ATGTCTTCTTTGGATGGCCTGGTAGTTACTGTTTCAATATCTCTGTGTTTTCTGGTAGCTCTGATCTTCAAAATCTTTCACAAAATATGGTGGACTCCGATTCGCGTACAGAAACTGATGGCTTCACAGGGAATCAGAGGACCTCCTTACAGACTTATCGATGGAAACGCCAAGGAAGTCTCCAACATGTGCAAGGAAGCCATTAGCAGGCCCTTGGATTTGTCGCACAACATATTACCAGTAGTTCTACCTCATGTTCATGCATGGACCAAAATCTATGGGAAGAATTATCTTCAGTGGCATGGTACTCGGGCTGAGTTGGTGGTGACGGAAGCCGAGTTGTGCAAGGAGATACTCAGTAATAAAGATGGATTCTATCTGAAACCCAAGTTCAGAGCTTATGCAAAGAAGATATTTGGGAATGGCCTTCCACAATTAGAAGGTGAAAAATGGGCGAAATCGCGAAAGCTGGCCAACCATGCCTTCCATGGACAGAACTTAAAAAATATGATTCCAGACATGATAGCTAGTGCTGAGACAATGCTAGTGAGGTGGAAAAGCCATGAAGAAGGGAAAGAAATGGATGTGTATAAAGAATTTAGATTGTTAACTTCAGAAGTGATTGCTAGGACAGCATTTGGCAGCAGCTATGTAGAAGGGAAGAACATTTTTGATATGTTGATGAAATTAAGCTTACTCAAAAATGATTTCAAACTCAAGTTTCCAGGCTTCAGCAAGCTTTTTAGAACCAGCGATGATATCGAATCAGACAGGCTTGAGAAAGAAATACGCGACTCCATCAAGGGGATCGTGAAGAAAAGAGAAGACAAGGCAATGAATGGGGAAGAAGAGAGCTTTGGGAGTGATTTTCTTGGTTTACTTTTAAAGGCTCATCATGATACCAATGACATTCAGAGGATTTCAGTGGACGATTTGGTTGATGAGTGCAAGTCATTTTACTTTGTTGGACAAGAGACCAGTAATACTTTGCTTTCATGGACTGTCTTGCTTTTGGCACTCCATACTGATTGGCAAGAGAAAGCAAGAAAGGAAGTCCTACAATTATTTGGGAAACAGACTCCGAATCCTGATGGCCTTGCCAAACTGAAAACCATGAGTATAATCTTTAATGAGTCCCTAAGGCTATATTCTCCAGCTGTTTCCGTTACAAGGAGAGTTGAAAAGGATGTTAGACTGGGAAAGCTCATTGTTCCTGCTAATGTTGAGTTGATCATTCCATATCTGGCGCTTCACCATGAGCCCGAGTCCTGGGGACAAGACGCGCAACTTTTCAAACCAGAACGATTCTCTGAAGGAGTTGCTAAAGCTACTAACAACAACATTGCTACATTCTTACCCTTTGGAATGGGACCTAGAATTTGTGTTGGCCTCAACTTCGCCACCATTGAAGCCAAGATTGCTCTATCAATGATTCTACAACGCTACTCCTTTACCCTTTCCCCAGGCTATGTTCACATGCCCTTAAAGCATATGACACTTCGCCCACAGCATGGAGTTCAAGTAATGCTACACTCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

513

Amino Acids

58.39

Weight (kDa)

9.16

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 89 - 503 4.8e-70 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016277)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00100
malus_domestica MD05G1364000.v1.1
prunus_persica Prupe.4G001100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0000131
rosa_laevigata RLG00000030844
rosa_multiflora Rmu_co8477805.1_g000001 Rmu_sc0003125.1_g000003 Rmu_ssc0000243.1_g000018
rosa_roxburghii Rroxscaffold_1G00075970
rosa_rugosa Rorug04G0381800
rosa_samantha Rh5AG000900 Rh5BG002100 Rh5CG001000 Rh5DG000900
rosa_wichuraiana Rw5G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1511
AccII CGCG 4 cut(s) 105, 463, 792, 1283
AclWI GGATC 1 cut(s) 815
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 2 cut(s) 596, 1377
AcuI CTGAAG 4 cut(s) 278, 597, 715, 1332
AfaI GTAC 2 cut(s) 108, 307
AfiI CCNNNNNNNGG 5 cut(s) 207, 804, 1170, 1269, 1511
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 7 cut(s) 36, 70, 712, 1181, 1294, 1409, 1520
AjnI CCWGG 4 cut(s) 18, 724, 1268, 1462
AjuI GAANNNNNNNTTGG 4 cut(s) 467, 499, 840, 872
Alw26I GTCTC 3 cut(s) 184, 530, 968
AlwI GGATC 1 cut(s) 815
AlwNI CAGNNNCTG 1 cut(s) 115
Ama87I CYCGRG 2 cut(s) 309, 1262
AoxI GGCC 6 cut(s) 16, 209, 424, 471, 1093, 1387
ApeKI GCWGC 2 cut(s) 642, 645
ApoI RAATTY 2 cut(s) 596, 1377
ArsI GACNNNNNNTTYG 2 cut(s) 1362, 1394
AspLEI GCGC 2 cut(s) 1249, 1285
AspS9I GGNCC 4 cut(s) 140, 210, 267, 1370
AsuHPI GGTGA 3 cut(s) 337, 455, 1244
AvaI CYCGRG 2 cut(s) 309, 1262
AvaII GGWCC 3 cut(s) 140, 267, 1370
AxyI CCTNAGG 1 cut(s) 1139
BalI TGGCCA 1 cut(s) 473
BanII GRGCYC 1 cut(s) 1263
BbsI GAAGAC 1 cut(s) 831
BbvI GCAGC 2 cut(s) 654, 657
BccI CCATC 6 cut(s) 8, 112, 155, 362, 806, 1085
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 4 cut(s) 20, 726, 1270, 1464
BclI TGATCA 1 cut(s) 1230
BcoDI GTCTC 3 cut(s) 184, 530, 968
BfaI CTAG 4 cut(s) 528, 545, 627, 1374
BfoI RGCGCY 1 cut(s) 1250
BisI GCNGC 2 cut(s) 643, 646
BlsI GCNGC 2 cut(s) 644, 647
Bme1390I CCNGG 4 cut(s) 20, 726, 1270, 1464
Bme18I GGWCC 3 cut(s) 140, 267, 1370
BmeT110I CYCGRG 2 cut(s) 309, 1262
BmgT120I GGNCC 4 cut(s) 140, 210, 267, 1370
BmiI GGNNCC 1 cut(s) 1371
BmrFI CCNGG 4 cut(s) 20, 726, 1270, 1464
BmrI ACTGGG 1 cut(s) 1205
BmuI ACTGGG 1 cut(s) 1205
BpiI GAAGAC 1 cut(s) 831
BpmI CTGGAG 1 cut(s) 1137
BpuEI CTTGAG 2 cut(s) 701, 797
Bsa29I ATCGAT 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 968
BsaJI CCNNGG 5 cut(s) 171, 213, 487, 1269, 1462
BsaXI ACNNNNNCTCC 2 cut(s) 1506, 1536
Bsc4I CCNNNNNNNGG 5 cut(s) 207, 804, 1170, 1269, 1511
Bse1I ACTGG 3 cut(s) 239, 978, 1200
Bse21I CCTNAGG 1 cut(s) 1139
Bse3DI GCAATG 2 cut(s) 840, 1341
BseBI CCWGG 4 cut(s) 20, 726, 1270, 1464
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 5 cut(s) 171, 213, 487, 1269, 1462
BseGI GGATG 3 cut(s) 19, 589, 1192
BseLI CCNNNNNNNGG 5 cut(s) 207, 804, 1170, 1269, 1511
BseMI GCAATG 2 cut(s) 840, 1341
BseMII CTCAG 3 cut(s) 306, 370, 525
BseNI ACTGG 3 cut(s) 239, 978, 1200
BseXI GCAGC 2 cut(s) 654, 657
Bsh1236I CGCG 4 cut(s) 105, 463, 792, 1283
BshFI GGCC 6 cut(s) 18, 211, 426, 473, 1095, 1389
BshVI ATCGAT 1 cut(s) 159
BsiHKCI CYCGRG 2 cut(s) 309, 1262
BslFI GGGAC 3 cut(s) 1120, 1287, 1383
BslI CCNNNNNNNGG 5 cut(s) 207, 804, 1170, 1269, 1511
BsmAI GTCTC 3 cut(s) 184, 530, 968
BsmFI GGGAC 3 cut(s) 1120, 1287, 1383
BsnI GGCC 6 cut(s) 18, 211, 426, 473, 1095, 1389
Bso31I GGTCTC 1 cut(s) 968
BsoBI CYCGRG 2 cut(s) 309, 1262
Bsp1286I GDGCHC 1 cut(s) 1263
Bsp143I GATC 3 cut(s) 63, 807, 1230
Bsp19I CCATGG 1 cut(s) 487
Bsp68I TCGCGA 1 cut(s) 463
BspANI GGCC 6 cut(s) 18, 211, 426, 473, 1095, 1389
BspCNI CTCAG 3 cut(s) 307, 369, 526
BspDI ATCGAT 1 cut(s) 159
BspFNI CGCG 4 cut(s) 105, 463, 792, 1283
BspHI TCATGA 1 cut(s) 895
BspLI GGNNCC 1 cut(s) 1371
BspPI GGATC 1 cut(s) 815
BspTNI GGTCTC 1 cut(s) 968
BsrDI GCAATG 2 cut(s) 840, 1341
BsrI ACTGG 3 cut(s) 239, 978, 1200
BssECI CCNNGG 5 cut(s) 171, 213, 487, 1269, 1462
BssMI GATC 3 cut(s) 63, 807, 1230
BssT1I CCWWGG 3 cut(s) 171, 213, 487
Bst2UI CCWGG 4 cut(s) 20, 726, 1270, 1464
Bst4CI ACNGT 3 cut(s) 31, 1003, 1539
Bst6I CTCTTC 1 cut(s) 843
BstC8I GCNNGC 3 cut(s) 209, 471, 737
BstDEI CTNAG 4 cut(s) 315, 356, 534, 1139
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 3 cut(s) 19, 589, 1192
BstFNI CGCG 4 cut(s) 105, 463, 792, 1283
BstH2I RGCGCY 1 cut(s) 1250
BstHHI GCGC 2 cut(s) 1249, 1285
BstKTI GATC 3 cut(s) 66, 810, 1233
BstMAI GTCTC 3 cut(s) 184, 530, 968
BstMBI GATC 3 cut(s) 63, 807, 1230
BstMWI GCNNNNNNNGC 4 cut(s) 479, 632, 1418, 1486
BstNI CCWGG 4 cut(s) 20, 726, 1270, 1464
BstNSI RCATGY 2 cut(s) 190, 1480
BstSCI CCNGG 4 cut(s) 18, 724, 1268, 1462
BstUI CGCG 4 cut(s) 105, 463, 792, 1283
BstV1I GCAGC 2 cut(s) 654, 657
BstV2I GAAGAC 1 cut(s) 831
Bsu15I ATCGAT 1 cut(s) 159
Bsu36I CCTNAGG 1 cut(s) 1139
BsuRI GGCC 6 cut(s) 18, 211, 426, 473, 1095, 1389
BsuTUI ATCGAT 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 487
BtgZI GCGATG 1 cut(s) 768
BtsCI GGATG 3 cut(s) 19, 589, 1192
BtsIMutI CAGTG 3 cut(s) 302, 930, 1535
BtuMI TCGCGA 1 cut(s) 463
Cac8I GCNNGC 3 cut(s) 209, 471, 737
CaiI CAGNNNCTG 1 cut(s) 115
CciI TCATGA 1 cut(s) 895
CfoI GCGC 2 cut(s) 1249, 1285
Cfr13I GGNCC 4 cut(s) 140, 210, 267, 1370
ClaI ATCGAT 1 cut(s) 159
CseI GACGC 1 cut(s) 1289
Csp6I GTAC 2 cut(s) 107, 306
CviQI GTAC 2 cut(s) 107, 306
DdeI CTNAG 4 cut(s) 315, 356, 534, 1139
DpnI GATC 3 cut(s) 65, 809, 1232
DpnII GATC 3 cut(s) 63, 807, 1230
DraI TTTAAA 1 cut(s) 885
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Eco130I CCWWGG 3 cut(s) 171, 213, 487
Eco24I GRGCYC 1 cut(s) 1263
Eco31I GGTCTC 1 cut(s) 968
Eco32I GATATC 1 cut(s) 760
Eco47I GGWCC 3 cut(s) 140, 267, 1370
Eco57I CTGAAG 4 cut(s) 278, 597, 715, 1332
Eco81I CCTNAGG 1 cut(s) 1139
Eco88I CYCGRG 2 cut(s) 309, 1262
EcoO109I RGGNCCY 3 cut(s) 140, 210, 1370
EcoRII CCWGG 4 cut(s) 18, 724, 1268, 1462
EcoRV GATATC 1 cut(s) 760
EcoT14I CCWWGG 3 cut(s) 171, 213, 487
EcoT22I ATGCAT 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 1263
ErhI CCWWGG 3 cut(s) 171, 213, 487
FaqI GGGAC 3 cut(s) 1120, 1287, 1383
FauNDI CATATG 1 cut(s) 1491
FbaI TGATCA 1 cut(s) 1230
Fnu4HI GCNGC 2 cut(s) 643, 646
FokI GGATG 3 cut(s) 26, 596, 1199
FriOI GRGCYC 1 cut(s) 1263
Fsp4HI GCNGC 2 cut(s) 643, 646
FspBI CTAG 4 cut(s) 528, 545, 627, 1374
GlaI GCGC 2 cut(s) 1248, 1284
GluI GCNGC 2 cut(s) 643, 646
GsuI CTGGAG 1 cut(s) 1137
HaeII RGCGCY 1 cut(s) 1250
HaeIII GGCC 6 cut(s) 18, 211, 426, 473, 1095, 1389
HgaI GACGC 1 cut(s) 1289
HhaI GCGC 2 cut(s) 1249, 1285
Hin6I GCGC 2 cut(s) 1247, 1283
HinP1I GCGC 2 cut(s) 1247, 1283
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HindIII AAGCTT 2 cut(s) 691, 737
HpaI GTTAAC 1 cut(s) 609
HphI GGTGA 3 cut(s) 337, 455, 1244
Hpy166II GTNNAC 5 cut(s) 93, 609, 878, 928, 1474
Hpy188III TCNNGA 5 cut(s) 462, 515, 811, 896, 1088
Hpy8I GTNNAC 5 cut(s) 93, 609, 878, 928, 1474
HpyAV CCTTC 6 cut(s) 434, 437, 493, 563, 650, 1307
HpyCH4III ACNGT 3 cut(s) 31, 1003, 1539
HpyCH4V TGCA 5 cut(s) 192, 263, 345, 404, 948
HpyF10VI GCNNNNNNNGC 4 cut(s) 479, 632, 1418, 1486
HpyF3I CTNAG 4 cut(s) 315, 356, 534, 1139
HspAI GCGC 2 cut(s) 1247, 1283
Ksp22I TGATCA 1 cut(s) 1230
KspAI GTTAAC 1 cut(s) 609
Kzo9I GATC 3 cut(s) 63, 807, 1230
Lsp1109I GCAGC 2 cut(s) 654, 657
MaeI CTAG 4 cut(s) 528, 545, 627, 1374
MaeIII GTNAC 3 cut(s) 25, 325, 1165
MalI GATC 3 cut(s) 65, 809, 1232
MboI GATC 3 cut(s) 63, 807, 1230
MhlI GDGCHC 1 cut(s) 1263
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 6 cut(s) 286, 434, 596, 686, 1061, 1377
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 5 cut(s) 88, 788, 1072, 1142, 1274
MmeI TCCRAC 2 cut(s) 207, 946
MnlI CCTC 6 cut(s) 131, 153, 261, 543, 909, 1400
Mox20I TGGCCA 1 cut(s) 473
Mph1103I ATGCAT 1 cut(s) 265
MscI TGGCCA 1 cut(s) 473
MseI TTAA 6 cut(s) 500, 608, 689, 884, 1128, 1484
MslI CAYNNNNRTG 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 1157
MspR9I CCNGG 4 cut(s) 20, 726, 1270, 1464
MvaI CCWGG 4 cut(s) 20, 726, 1270, 1464
MvnI CGCG 4 cut(s) 105, 463, 792, 1283
MwoI GCNNNNNNNGC 4 cut(s) 479, 632, 1418, 1486
NcoI CCATGG 1 cut(s) 487
NdeI CATATG 1 cut(s) 1491
NdeII GATC 3 cut(s) 63, 807, 1230
NlaIV GGNNCC 1 cut(s) 1371
NmeAIII GCCGAG 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 325
NruI TCGCGA 1 cut(s) 463
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 2 cut(s) 190, 1480
PagI TCATGA 1 cut(s) 895
PciI ACATGT 1 cut(s) 186
PfeI GAWTC 8 cut(s) 100, 132, 372, 511, 764, 1084, 1305, 1432
PflMI CCANNNNNTGG 1 cut(s) 1511
PkrI GCNGC 2 cut(s) 644, 647
PleI GAGTC 5 cut(s) 88, 788, 1072, 1141, 1273
PpsI GAGTC 5 cut(s) 88, 788, 1072, 1141, 1273
PpuMI RGGWCCY 2 cut(s) 140, 1370
PscI ACATGT 1 cut(s) 186
Psp5II RGGWCCY 2 cut(s) 140, 1370
Psp6I CCWGG 4 cut(s) 18, 724, 1268, 1462
PspGI CCWGG 4 cut(s) 18, 724, 1268, 1462
PspN4I GGNNCC 1 cut(s) 1371
PspPI GGNCC 4 cut(s) 140, 210, 267, 1370
PspPPI RGGWCCY 2 cut(s) 140, 1370
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 1157
RruI TCGCGA 1 cut(s) 463
RsaI GTAC 2 cut(s) 108, 307
RsaNI GTAC 2 cut(s) 107, 306
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 6 cut(s) 500, 608, 689, 884, 1128, 1484
SatI GCNGC 2 cut(s) 643, 646
Sau3AI GATC 3 cut(s) 63, 807, 1230
Sau96I GGNCC 4 cut(s) 140, 210, 267, 1370
SchI GAGTC 5 cut(s) 88, 788, 1072, 1142, 1274
ScrFI CCNGG 4 cut(s) 20, 726, 1270, 1464
SduI GDGCHC 1 cut(s) 1263
SinI GGWCC 3 cut(s) 140, 267, 1370
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 716, 776
SmoI CTYRAG 2 cut(s) 716, 776
Sse9I AATT 6 cut(s) 286, 434, 596, 686, 1061, 1377
SspMI CTAG 4 cut(s) 528, 545, 627, 1374
StyD4I CCNGG 4 cut(s) 18, 724, 1268, 1462
StyI CCWWGG 3 cut(s) 171, 213, 487
TaaI ACNGT 3 cut(s) 31, 1003, 1539
TaqI TCGA 2 cut(s) 159, 762
TasI AATT 6 cut(s) 286, 434, 596, 686, 1061, 1377
TfiI GAWTC 8 cut(s) 100, 132, 372, 511, 764, 1084, 1305, 1432
Tru1I TTAA 6 cut(s) 500, 608, 689, 884, 1128, 1484
Tru9I TTAA 6 cut(s) 500, 608, 689, 884, 1128, 1484
TscAI CASTG 3 cut(s) 302, 930, 1542
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 642, 645
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 5 cut(s) 248, 579, 698, 851, 984
TspGWI ACGGA 2 cut(s) 344, 1153
TspRI CASTG 3 cut(s) 302, 930, 1542
Van91I CCANNNNNTGG 1 cut(s) 1511
VpaK11BI GGWCC 3 cut(s) 140, 267, 1370
XapI RAATTY 2 cut(s) 596, 1377
XceI RCATGY 2 cut(s) 190, 1480
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XspI CTAG 4 cut(s) 528, 545, 627, 1374
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.