FvH4_3g01850

Rhamnogalacturonate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015567
Physical Location & Seq
Forward (+)
950160 .. 953560
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01850.t1

Sequence Viewer

Length: 1956 bp
ATGGCAAAGAAGAAAATGAAACTGAGCAGCCAAGGTCCTTATGTTACACTAGACAATGGGTTGGTGAAGCTTACAGTTGTGAAACCTCAAGGATATATAACTGGCATTGCTTATGGAGGAATGGACAACCTTCTAGATCCCAAGTCCAATGAATCAAGTAGAGGATATTGGGACATCAACTGGAATTTGCCAGGAGGCCAAGACATATACGATTTACTGAAAGGAGCTGAATATAGTGTTGTCCAAATGAACAAAGAATACTTAGAAGTTTCATTCAAGAACACTTATGATCCATCATCAGTTGGAGGCACTAATTTGCCTCTCAGCGTAGATATAAGGTACATAGTAAGGGCTGGTGTTTCAGGCTTCTACTGCTATGGAATCTATGAGCGGCCATCTGGCTGTCCTGCTTTCGATATAGCTCAGACAAGACTGGTGTTTAAGCTGAGAAAAGACAAGTTTCATTACATGGCAATAACAGATGAGAAACAAAGGGTAATGCCTATGCCTGAGGATCTGCTTCCAGATAGAGGCAAGCAACTAATTGTACCAGAGTCAGTTTTGCTAGTAAATCCCATAAATCCAGATCTCAAAGGGGAGGTTGACGATAAGTACATGTATTCGATGGACAACAAAGACAGTGGAGTCCATGGATGGATAGGTTCTGGCCCCATTATCGGATTTTGGACCATCTTTCCGAGCCAGGAATTCAGAAATGGAGGACCTACAAAACAAAACCTCACAGTTCACACTGGTCCAACTTGCCTTGCAATGTTTCAAGGAACACATTATCTTGGGTTAGATATGGTAGCTCAATTCGAAGAGGGGGAGACATGGAAGAAGGTTTTTGGACCCGTCTTTATACACCTTAACTCAATACCAGATGCAACAAAAGCCCACAAGTTATGGACAGATGCAAAGAAACAGAGGCTGTTTGAAGAGACACTGTGGCCTTATGATTTTGTCTCATCACCCGACTATGTTGCTGCCAAAGACCGCGGTTCAGTTTCTGGGAGATTGTTAGTACAGGACAGGTATGTTTCCGGTTCTCTCATTCCTGCTAAAAATGCATATATTGGTCTCTCGGTTGCAACTACTGCAGGATCATGGCAACTAGAAAGCAAGGGCTATCAGTTTTGGGTACAAACAGATTCAAATGGAAACTTTACTATCAAGAATGTGATCCCTGGAGTATATGGACTTCATGGCTGGGTTCCTGGTTTCATGGGTGACTACCTTAACAATGACCAGATCACTATCTCTGAAGGAAAACAAACAGAACTTGGAAATCTGACCTATGTTCCCCCGAGAGACGGACCAACATTATGGGAGATTGGCTTCCCTGATCGAACAGCCATAGGCGAATTTGTTCCTGATGTGAACCCAATGTATGTCAACAAGTTGTTCATCAACAGCCCCGAAAAGTATAGACAATATGGCTTATGGGACAGATACACTGATATACACCCTGAACTCGACCAAATCTACACTATAGGAATCAGTAATACCAAAACAGACTGGTTCTTTGCTCATGTGGACAGGAGAGGGCCAGGAAATAAGTATGTACCAACAACATGGACAATCAAGTTCAATCTCAATTCAGTAACTACTGGCACTTACCAGCTGAGACTGTCCATTGCTTCAGCAACCCGCTCAGACCTTGAGGTCCATGTTAACCATATGGATACAGGGCACCTGGTGTTTCAAGAGTTGAACTTAGGAACAGATAACACAGTTTGTCGACACGGAGTCCATGGATTCTATTGTCTTTTCAGCGCCAACTTTCCCTCAACATTGCTGGTGAAGGGAGATAACTCCATTTTTCTCACACAGGCGAGGGGTGGCGATTCACTTTGTGGAGTTCTCTATGATTATCTAAGACTAGAAGCTCCTGCAACTGCAGAGAGCCCTAACAGCTTATACCCACCTATTGAGTATGTTCATAATACAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

652

Amino Acids

73.01

Weight (kDa)

5.95

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 4 - 201 7e-71 Rhamnogalacturonate lyase family
fn3_3 PF14686 355 - 428 4.2e-23 Polysaccharide lyase family 4, domain II
CBM-like PF14683 441 - 628 4.2e-39 Polysaccharide lyase family 4, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015567)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01850
malus_domestica MD10G1323400.v1.1
prunus_persica Prupe.4G018900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002721
rosa_laevigata RLG00000031054
rosa_multiflora Rmu_sc0018891.1_g000001 Rmu_sc0018892.1_g000001 Rmu_sc0037618.1_g000002 Rmu_sc0041618.1_g000001
rosa_roxburghii Rroxscaffold_1G00073160
rosa_rugosa Rorug04G0398700
rosa_samantha Rh5AG021900 Rh5BG024800 Rh5CG024200 Rh5DG023200
rosa_wichuraiana Rw5G002040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 644, 1664
AccB1I GGYRCC 1 cut(s) 1692
AccBSI CCGCTC 2 cut(s) 391, 1653
AccI GTMKAC 1 cut(s) 1741
AccII CGCG 1 cut(s) 999
AciI CCGC 4 cut(s) 391, 997, 999, 1651
AclWI GGATC 5 cut(s) 131, 284, 522, 1111, 1177
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 3 cut(s) 184, 707, 1364
AcuI CTGAAG 2 cut(s) 1284, 1626
AdeI CACNNNGTG 2 cut(s) 1699, 1856
AfaI GTAC 6 cut(s) 341, 549, 614, 1026, 1143, 1566
AfiI CCNNNNNNNGG 3 cut(s) 530, 677, 1313
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 7 cut(s) 277, 779, 938, 1155, 1591, 1706, 1714
AhdI GACNNNNNGTC 1 cut(s) 1748
AjnI CCWGG 6 cut(s) 190, 702, 1186, 1216, 1549, 1695
AluBI AGCT 8 cut(s) 70, 227, 422, 445, 812, 1624, 1889, 1917
AluI AGCT 8 cut(s) 70, 227, 422, 445, 812, 1624, 1889, 1917
Alw26I GTCTC 6 cut(s) 824, 935, 970, 1085, 1305, 1621
AlwI GGATC 5 cut(s) 131, 284, 522, 1111, 1177
AlwNI CAGNNNCTG 2 cut(s) 931, 1010
Ama87I CYCGRG 1 cut(s) 1306
AoxI GGCC 5 cut(s) 196, 392, 667, 950, 1547
ApeKI GCWGC 2 cut(s) 27, 986
ApoI RAATTY 3 cut(s) 184, 707, 1364
ArsI GACNNNNNNTTYG 2 cut(s) 1508, 1540
Asp700I GAANNNNTTC 1 cut(s) 1368
AspLEI GCGC 1 cut(s) 1778
AspS9I GGNCC 9 cut(s) 35, 668, 687, 722, 755, 851, 1316, 1547, 1666
AsuHPI GGTGA 4 cut(s) 76, 963, 1241, 1813
AsuII TTCGAA 1 cut(s) 819
AvaI CYCGRG 1 cut(s) 1306
AvaII GGWCC 7 cut(s) 35, 687, 722, 755, 851, 1316, 1666
AxyI CCTNAGG 1 cut(s) 510
BaeGI GKGCMC 1 cut(s) 1695
BanI GGYRCC 1 cut(s) 1692
BanII GRGCYC 1 cut(s) 1910
BarI GAAGNNNNNNTAC 2 cut(s) 1185, 1217
BbvI GCAGC 2 cut(s) 39, 973
BccI CCATC 5 cut(s) 301, 403, 619, 648, 698
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 6 cut(s) 192, 704, 1188, 1218, 1551, 1697
BciVI GTATCC 1 cut(s) 1678
BcoDI GTCTC 6 cut(s) 824, 935, 970, 1085, 1305, 1621
BfaI CTAG 5 cut(s) 50, 134, 566, 1115, 1883
BfmI CTRYAG 3 cut(s) 1098, 1491, 1899
BfoI RGCGCY 1 cut(s) 1779
BfuI GTATCC 1 cut(s) 1678
BglII AGATCT 1 cut(s) 586
BisI GCNGC 3 cut(s) 28, 392, 987
BlsI GCNGC 3 cut(s) 29, 393, 988
Bme1390I CCNGG 6 cut(s) 192, 704, 1188, 1218, 1551, 1697
Bme18I GGWCC 7 cut(s) 35, 687, 722, 755, 851, 1316, 1666
BmeRI GACNNNNNGTC 1 cut(s) 1748
BmeT110I CYCGRG 1 cut(s) 1306
BmgT120I GGNCC 9 cut(s) 35, 668, 687, 722, 755, 851, 1316, 1547, 1666
BmiI GGNNCC 4 cut(s) 670, 853, 1215, 1694
BmrFI CCNGG 6 cut(s) 192, 704, 1188, 1218, 1551, 1697
BmsI GCATC 2 cut(s) 874, 904
BpmI CTGGAG 1 cut(s) 1209
Bpu14I TTCGAA 1 cut(s) 819
BpuEI CTTGAG 2 cut(s) 72, 1682
BsaBI GATNNNNATC 1 cut(s) 1256
BsaI GGTCTC 1 cut(s) 1085
BsaJI CCNNGG 5 cut(s) 31, 649, 997, 1186, 1753
BsaWI WCCGGW 1 cut(s) 1043
Bsc4I CCNNNNNNNGG 3 cut(s) 530, 677, 1313
Bse1I ACTGG 6 cut(s) 106, 185, 438, 757, 1523, 1615
Bse21I CCTNAGG 1 cut(s) 510
Bse3DI GCAATG 4 cut(s) 105, 777, 1635, 1793
Bse8I GATNNNNATC 1 cut(s) 1256
BseBI CCWGG 6 cut(s) 192, 704, 1188, 1218, 1551, 1697
BseDI CCNNGG 5 cut(s) 31, 649, 997, 1186, 1753
BseGI GGATG 1 cut(s) 659
BseJI GATNNNNATC 1 cut(s) 1256
BseLI CCNNNNNNNGG 3 cut(s) 530, 677, 1313
BseMI GCAATG 4 cut(s) 105, 777, 1635, 1793
BseMII CTCAG 7 cut(s) 14, 337, 437, 437, 501, 1616, 1668
BseNI ACTGG 6 cut(s) 106, 185, 438, 757, 1523, 1615
BseSI GKGCMC 1 cut(s) 1695
BseXI GCAGC 2 cut(s) 39, 973
BseYI CCCAGC 1 cut(s) 1209
Bsh1236I CGCG 1 cut(s) 999
BshFI GGCC 5 cut(s) 198, 394, 669, 952, 1549
BshNI GGYRCC 1 cut(s) 1692
BsiHKCI CYCGRG 1 cut(s) 1306
BsiSI CCGG 1 cut(s) 1044
BslFI GGGAC 2 cut(s) 185, 1460
BslI CCNNNNNNNGG 3 cut(s) 530, 677, 1313
BsmAI GTCTC 6 cut(s) 824, 935, 970, 1085, 1305, 1621
BsmBI CGTCTC 1 cut(s) 1305
BsmFI GGGAC 2 cut(s) 185, 1460
BsnI GGCC 5 cut(s) 198, 394, 669, 952, 1549
Bso31I GGTCTC 1 cut(s) 1085
BsoBI CYCGRG 1 cut(s) 1306
Bsp119I TTCGAA 1 cut(s) 819
Bsp1286I GDGCHC 2 cut(s) 1695, 1910
Bsp143I GATC 8 cut(s) 136, 289, 514, 586, 1103, 1182, 1251, 1345
Bsp19I CCATGG 2 cut(s) 649, 1753
BspACI CCGC 4 cut(s) 391, 997, 999, 1651
BspANI GGCC 5 cut(s) 198, 394, 669, 952, 1549
BspCNI CTCAG 7 cut(s) 15, 336, 436, 438, 502, 1617, 1667
BspFNI CGCG 1 cut(s) 999
BspLI GGNNCC 4 cut(s) 670, 853, 1215, 1694
BspMAI CTGCAG 2 cut(s) 1102, 1903
BspPI GGATC 5 cut(s) 131, 284, 522, 1111, 1177
BspT104I TTCGAA 1 cut(s) 819
BspT107I GGYRCC 1 cut(s) 1692
BspTNI GGTCTC 1 cut(s) 1085
BsrBI CCGCTC 2 cut(s) 391, 1653
BsrDI GCAATG 4 cut(s) 105, 777, 1635, 1793
BsrI ACTGG 6 cut(s) 106, 185, 438, 757, 1523, 1615
BssECI CCNNGG 5 cut(s) 31, 649, 997, 1186, 1753
BssMI GATC 8 cut(s) 136, 289, 514, 586, 1103, 1182, 1251, 1345
BssT1I CCWWGG 3 cut(s) 31, 649, 1753
Bst2UI CCWGG 6 cut(s) 192, 704, 1188, 1218, 1551, 1697
Bst4CI ACNGT 6 cut(s) 76, 641, 745, 948, 1632, 1735
Bst6I CTCTTC 2 cut(s) 816, 933
BstAPI GCANNNNNTGC 1 cut(s) 1097
BstBI TTCGAA 1 cut(s) 819
BstC8I GCNNGC 1 cut(s) 536
BstDSI CCRYGG 3 cut(s) 649, 997, 1753
BstF5I GGATG 1 cut(s) 659
BstFNI CGCG 1 cut(s) 999
BstH2I RGCGCY 1 cut(s) 1779
BstHHI GCGC 1 cut(s) 1778
BstKTI GATC 8 cut(s) 139, 292, 517, 589, 1106, 1185, 1254, 1348
BstMAI GTCTC 6 cut(s) 824, 935, 970, 1085, 1305, 1621
BstMBI GATC 8 cut(s) 136, 289, 514, 586, 1103, 1182, 1251, 1345
BstMWI GCNNNNNNNGC 5 cut(s) 372, 893, 1067, 1097, 1914
BstNI CCWGG 6 cut(s) 192, 704, 1188, 1218, 1551, 1697
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 6 cut(s) 190, 702, 1186, 1216, 1549, 1695
BstSFI CTRYAG 3 cut(s) 1098, 1491, 1899
BstSLI GKGCMC 1 cut(s) 1695
BstUI CGCG 1 cut(s) 999
BstV1I GCAGC 2 cut(s) 39, 973
BstX2I RGATCY 3 cut(s) 136, 514, 586
BstXI CCANNNNNNTGG 2 cut(s) 1326, 1575
BstYI RGATCY 3 cut(s) 136, 514, 586
Bsu36I CCTNAGG 1 cut(s) 510
BsuI GTATCC 1 cut(s) 1678
BsuRI GGCC 5 cut(s) 198, 394, 669, 952, 1549
BtgI CCRYGG 3 cut(s) 649, 997, 1753
BtsCI GGATG 1 cut(s) 659
BtsIMutI CAGTG 4 cut(s) 646, 750, 944, 1455
Cac8I GCNNGC 1 cut(s) 536
CaiI CAGNNNCTG 2 cut(s) 931, 1010
CfoI GCGC 1 cut(s) 1778
Cfr13I GGNCC 9 cut(s) 35, 668, 687, 722, 755, 851, 1316, 1547, 1666
Cfr42I CCGCGG 1 cut(s) 1000
CsiI ACCWGGT 1 cut(s) 1695
Csp6I GTAC 6 cut(s) 340, 548, 613, 1025, 1142, 1565
CspCI CAANNNNNGTGG 2 cut(s) 622, 657
CviQI GTAC 6 cut(s) 340, 548, 613, 1025, 1142, 1565
DpnI GATC 8 cut(s) 138, 291, 516, 588, 1105, 1184, 1253, 1347
DpnII GATC 8 cut(s) 136, 289, 514, 586, 1103, 1182, 1251, 1345
DraIII CACNNNGTG 2 cut(s) 1699, 1856
DrdI GACNNNNNNGTC 2 cut(s) 644, 1664
DriI GACNNNNNGTC 1 cut(s) 1748
DseDI GACNNNNNNGTC 2 cut(s) 644, 1664
EaeI YGGCCR 1 cut(s) 392
Eam1104I CTCTTC 2 cut(s) 816, 933
Eam1105I GACNNNNNGTC 1 cut(s) 1748
EarI CTCTTC 2 cut(s) 816, 933
Eco130I CCWWGG 3 cut(s) 31, 649, 1753
Eco24I GRGCYC 1 cut(s) 1910
Eco31I GGTCTC 1 cut(s) 1085
Eco47I GGWCC 7 cut(s) 35, 687, 722, 755, 851, 1316, 1666
Eco57I CTGAAG 2 cut(s) 1284, 1626
Eco81I CCTNAGG 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 1306
EcoO109I RGGNCCY 2 cut(s) 35, 722
EcoRI GAATTC 1 cut(s) 707
EcoRII CCWGG 6 cut(s) 190, 702, 1186, 1216, 1549, 1695
EcoT14I CCWWGG 3 cut(s) 31, 649, 1753
EcoT22I ATGCAT 1 cut(s) 1072
EcoT38I GRGCYC 1 cut(s) 1910
ErhI CCWWGG 3 cut(s) 31, 649, 1753
Esp3I CGTCTC 1 cut(s) 1305
FaqI GGGAC 2 cut(s) 185, 1460
FauI CCCGC 1 cut(s) 1658
FauNDI CATATG 1 cut(s) 1680
FblI GTMKAC 1 cut(s) 1741
Fnu4HI GCNGC 3 cut(s) 28, 392, 987
FokI GGATG 1 cut(s) 666
FriOI GRGCYC 1 cut(s) 1910
Fsp4HI GCNGC 3 cut(s) 28, 392, 987
FspBI CTAG 5 cut(s) 50, 134, 566, 1115, 1883
GlaI GCGC 1 cut(s) 1777
GluI GCNGC 3 cut(s) 28, 392, 987
GsaI CCCAGC 1 cut(s) 1213
GsuI CTGGAG 1 cut(s) 1209
HaeII RGCGCY 1 cut(s) 1779
HaeIII GGCC 5 cut(s) 198, 394, 669, 952, 1549
HapII CCGG 1 cut(s) 1044
HhaI GCGC 1 cut(s) 1778
Hin6I GCGC 1 cut(s) 1776
HinP1I GCGC 1 cut(s) 1776
HincII GTYRAC 4 cut(s) 604, 1396, 1675, 1742
HindII GTYRAC 4 cut(s) 604, 1396, 1675, 1742
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 9 cut(s) 152, 381, 554, 645, 1151, 1497, 1749, 1758, 1847
HpaI GTTAAC 1 cut(s) 1675
HpaII CCGG 1 cut(s) 1044
HphI GGTGA 4 cut(s) 76, 963, 1241, 1813
Hpy166II GTNNAC 7 cut(s) 604, 748, 1381, 1396, 1537, 1675, 1742
Hpy188I TCNGA 7 cut(s) 426, 680, 699, 713, 1264, 1293, 1657
Hpy188III TCNNGA 7 cut(s) 134, 277, 524, 584, 1174, 1373, 1706
Hpy8I GTNNAC 7 cut(s) 604, 748, 1381, 1396, 1537, 1675, 1742
HpyAV CCTTC 4 cut(s) 140, 835, 1259, 1798
HpyCH4III ACNGT 6 cut(s) 76, 641, 745, 948, 1632, 1735
HpyCH4V TGCA 8 cut(s) 770, 887, 917, 1070, 1091, 1100, 1895, 1901
HpyF10VI GCNNNNNNNGC 5 cut(s) 372, 893, 1067, 1097, 1914
HspAI GCGC 1 cut(s) 1776
KspAI GTTAAC 1 cut(s) 1675
KspI CCGCGG 1 cut(s) 1000
Kzo9I GATC 8 cut(s) 136, 289, 514, 586, 1103, 1182, 1251, 1345
LmnI GCTCC 2 cut(s) 224, 1894
Lsp1109I GCAGC 2 cut(s) 39, 973
LweI GCATC 2 cut(s) 874, 904
MabI ACCWGGT 1 cut(s) 1695
MaeI CTAG 5 cut(s) 50, 134, 566, 1115, 1883
MaeIII GTNAC 3 cut(s) 43, 1229, 1603
MalI GATC 8 cut(s) 138, 291, 516, 588, 1105, 1184, 1253, 1347
MbiI CCGCTC 2 cut(s) 391, 1653
MboI GATC 8 cut(s) 136, 289, 514, 586, 1103, 1182, 1251, 1345
MboII GAAGA 4 cut(s) 22, 833, 850, 950
MflI RGATCY 3 cut(s) 136, 514, 586
MhlI GDGCHC 2 cut(s) 1695, 1910
MluCI AATT 7 cut(s) 184, 313, 543, 707, 815, 1364, 1597
MlyI GAGTC 3 cut(s) 563, 654, 1758
MmeI TCCRAC 2 cut(s) 283, 782
Mph1103I ATGCAT 1 cut(s) 1072
MroXI GAANNNNTTC 1 cut(s) 1368
MseI TTAA 4 cut(s) 441, 870, 1239, 1674
MspA1I CMGCKG 2 cut(s) 999, 1624
MspI CCGG 1 cut(s) 1044
MspR9I CCNGG 6 cut(s) 192, 704, 1188, 1218, 1551, 1697
MvaI CCWGG 6 cut(s) 192, 704, 1188, 1218, 1551, 1697
MvnI CGCG 1 cut(s) 999
MwoI GCNNNNNNNGC 5 cut(s) 372, 893, 1067, 1097, 1914
NcoI CCATGG 2 cut(s) 649, 1753
NdeI CATATG 1 cut(s) 1680
NdeII GATC 8 cut(s) 136, 289, 514, 586, 1103, 1182, 1251, 1345
NlaIV GGNNCC 4 cut(s) 670, 853, 1215, 1694
NmuCI GTSAC 1 cut(s) 1229
NsiI ATGCAT 1 cut(s) 1072
NspI RCATGY 1 cut(s) 619
NspV TTCGAA 1 cut(s) 819
PciI ACATGT 1 cut(s) 615
PdmI GAANNNNTTC 1 cut(s) 1368
PfeI GAWTC 6 cut(s) 152, 381, 1151, 1497, 1758, 1847
PkrI GCNGC 3 cut(s) 29, 393, 988
PleI GAGTC 3 cut(s) 562, 653, 1757
PpsI GAGTC 3 cut(s) 562, 653, 1757
PpuMI RGGWCCY 2 cut(s) 35, 722
PscI ACATGT 1 cut(s) 615
Psp5II RGGWCCY 2 cut(s) 35, 722
Psp6I CCWGG 6 cut(s) 190, 702, 1186, 1216, 1549, 1695
PspFI CCCAGC 1 cut(s) 1209
PspGI CCWGG 6 cut(s) 190, 702, 1186, 1216, 1549, 1695
PspN4I GGNNCC 4 cut(s) 670, 853, 1215, 1694
PspPI GGNCC 9 cut(s) 35, 668, 687, 722, 755, 851, 1316, 1547, 1666
PspPPI RGGWCCY 2 cut(s) 35, 722
PsrI GAACNNNNNNTAC 2 cut(s) 242, 274
PstI CTGCAG 2 cut(s) 1102, 1903
PstNI CAGNNNCTG 2 cut(s) 931, 1010
PsuI RGATCY 3 cut(s) 136, 514, 586
PvuII CAGCTG 1 cut(s) 1624
RsaI GTAC 6 cut(s) 341, 549, 614, 1026, 1143, 1566
RsaNI GTAC 6 cut(s) 340, 548, 613, 1025, 1142, 1565
SacII CCGCGG 1 cut(s) 1000
SalI GTCGAC 1 cut(s) 1740
SaqAI TTAA 4 cut(s) 441, 870, 1239, 1674
SatI GCNGC 3 cut(s) 28, 392, 987
Sau3AI GATC 8 cut(s) 136, 289, 514, 586, 1103, 1182, 1251, 1345
Sau96I GGNCC 9 cut(s) 35, 668, 687, 722, 755, 851, 1316, 1547, 1666
SchI GAGTC 3 cut(s) 563, 654, 1758
ScrFI CCNGG 6 cut(s) 192, 704, 1188, 1218, 1551, 1697
SduI GDGCHC 2 cut(s) 1695, 1910
SexAI ACCWGGT 1 cut(s) 1695
SfaNI GCATC 2 cut(s) 874, 904
SfcI CTRYAG 3 cut(s) 1098, 1491, 1899
Sfr303I CCGCGG 1 cut(s) 1000
SfuI TTCGAA 1 cut(s) 819
SgrBI CCGCGG 1 cut(s) 1000
SinI GGWCC 7 cut(s) 35, 687, 722, 755, 851, 1316, 1666
SmlI CTYRAG 2 cut(s) 87, 1661
SmoI CTYRAG 2 cut(s) 87, 1661
Sse9I AATT 7 cut(s) 184, 313, 543, 707, 815, 1364, 1597
SsiI CCGC 4 cut(s) 391, 997, 999, 1651
SspMI CTAG 5 cut(s) 50, 134, 566, 1115, 1883
StyD4I CCNGG 6 cut(s) 190, 702, 1186, 1216, 1549, 1695
StyI CCWWGG 3 cut(s) 31, 649, 1753
TaaI ACNGT 6 cut(s) 76, 641, 745, 948, 1632, 1735
TaqI TCGA 6 cut(s) 414, 623, 819, 1348, 1476, 1741
TasI AATT 7 cut(s) 184, 313, 543, 707, 815, 1364, 1597
TatI WGTACW 2 cut(s) 612, 1024
TauI GCSGC 1 cut(s) 394
TfiI GAWTC 6 cut(s) 152, 381, 1151, 1497, 1758, 1847
Tru1I TTAA 4 cut(s) 441, 870, 1239, 1674
Tru9I TTAA 4 cut(s) 441, 870, 1239, 1674
TscAI CASTG 4 cut(s) 646, 757, 951, 1462
TseFI GTSAC 1 cut(s) 1229
TseI GCWGC 2 cut(s) 27, 986
Tsp45I GTSAC 1 cut(s) 1229
TspDTI ATGAA 9 cut(s) 32, 165, 261, 263, 452, 1193, 1213, 1396, 1931
TspGWI ACGGA 2 cut(s) 1329, 1761
TspRI CASTG 4 cut(s) 646, 757, 951, 1462
VpaK11BI GGWCC 7 cut(s) 35, 687, 722, 755, 851, 1316, 1666
XapI RAATTY 3 cut(s) 184, 707, 1364
XbaI TCTAGA 1 cut(s) 133
XceI RCATGY 1 cut(s) 619
XmiI GTMKAC 1 cut(s) 1741
XmnI GAANNNNTTC 1 cut(s) 1368
XspI CTAG 5 cut(s) 50, 134, 566, 1115, 1883
Zsp2I ATGCAT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.