Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041618.1

Orthogroup ID

OG0015567

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1826

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041618.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1021 bp

atgaacaaagaaagtttagaggtttccttcaagaacatttacgatccatggtcagctcgaagcacagatttgcctctcaccgtggacataaggtacatagtaaggactggtgtttcaggcttctactgctatggaatttatgagcggccatctggttgtccggctttcgatcttgctcagacaagactggtgtttaagcttagaaaagacaagttccactacatggcaataacagatgagaaacaaagggtaatgcctatgcctgaggatctgcttccaggtagaggcaagcagctaattgtaccagagtcagttttgctagtaaatcccataaatccagatctcaaaggggaggttgacgataagtatatgtattcaatggataacaaagatagtggactccatggatggataggttctggccccattatcggattttggaccatccttccgagccaggagttcagaaatggaggacctacaaagcaaaacctcacagttcacactggtccaacctgccttgcaatgtttcagggaacacattatcttgggttagatatggtagctcaattcgaagagggagagacatggaagaaggtgtttggacccgtctttatataccttaactcaacaccagatacatcaaaagcccacaatttatggacagatgcaaagaaacagaggctgtttgaagagacagtgtggccttatgattttgtctcgtcacccaactatgttgctgcaaaagaccgcggttcagtttctggaagattgttagtgcaggacaggtatatttcgggttctctcattcctgctaaaaatgcttatattggtctctcggttgcaactactgcaggatcatggcaacttgaaagcaagggctatcagttctgggtacaaacagattcaaatggaaactttaatatcaagaatgtgatccctggagtatatggacttcatggctgggttcctggtttcatgggtgattaccttcacaaagaacaaatcactatctctgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

340

Amino Acids

38.35

Weight (kDa)

6.4

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01850
malus_domestica	MD10G1323400.v1.1
prunus_persica	Prupe.4G018900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0002721
rosa_laevigata	RLG00000031054
rosa_multiflora	Rmu_sc0018891.1_g000001 Rmu_sc0018892.1_g000001 Rmu_sc0037618.1_g000002 Rmu_sc0041618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073160
rosa_rugosa	Rorug04G0398700
rosa_samantha	Rh5AG021900 Rh5BG024800 Rh5CG024200 Rh5DG023200
rosa_wichuraiana	Rw5G002040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccBSI	CCGCTC	1 cut(s)	145
AccII	CGCG	1 cut(s)	753
AciI	CCGC	3 cut(s)	145, 751, 753
AclWI	GGATC	4 cut(s)	38, 276, 865, 931
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	135
AfaI	GTAC	3 cut(s)	95, 303, 897
AfiI	CCNNNNNNNGG	3 cut(s)	223, 284, 431
AgsI	TTSAA	5 cut(s)	31, 378, 692, 872, 909
AjnI	CCWGG	4 cut(s)	277, 456, 940, 970
AluBI	AGCT	4 cut(s)	56, 199, 295, 566
AluI	AGCT	4 cut(s)	56, 199, 295, 566
Alw26I	GTCTC	4 cut(s)	578, 689, 724, 839
AlwI	GGATC	4 cut(s)	38, 276, 865, 931
AlwNI	CAGNNNCTG	2 cut(s)	685, 764
AoxI	GGCC	3 cut(s)	146, 421, 704
ApeKI	GCWGC	2 cut(s)	292, 740
ApoI	RAATTY	1 cut(s)	135
AspS9I	GGNCC	5 cut(s)	422, 441, 476, 509, 605
AsuHPI	GGTGA	3 cut(s)	70, 717, 995
AsuII	TTCGAA	1 cut(s)	573
AvaII	GGWCC	4 cut(s)	441, 476, 509, 605
AxyI	CCTNAGG	1 cut(s)	264
BarI	GAAGNNNNNNTAC	2 cut(s)	939, 971
BbvI	GCAGC	2 cut(s)	304, 727
BccI	CCATC	3 cut(s)	157, 402, 452
BciT130I	CCWGG	4 cut(s)	279, 458, 942, 972
BcoDI	GTCTC	4 cut(s)	578, 689, 724, 839
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	852
BfuAI	ACCTGC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	146, 293, 741
BlsI	GCNGC	3 cut(s)	147, 294, 742
Bme1390I	CCNGG	4 cut(s)	279, 458, 942, 972
Bme18I	GGWCC	4 cut(s)	441, 476, 509, 605
BmgT120I	GGNCC	5 cut(s)	422, 441, 476, 509, 605
BmiI	GGNNCC	3 cut(s)	424, 607, 969
BmrFI	CCNGG	4 cut(s)	279, 458, 942, 972
BmsI	GCATC	1 cut(s)	658
BpmI	CTGGAG	1 cut(s)	963
Bpu14I	TTCGAA	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	839
BsaJI	CCNNGG	5 cut(s)	47, 81, 403, 751, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 284, 431
Bse1I	ACTGG	3 cut(s)	112, 192, 511
Bse21I	CCTNAGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	4 cut(s)	279, 458, 942, 972
BseDI	CCNNGG	5 cut(s)	47, 81, 403, 751, 940
BseGI	GGATG	2 cut(s)	413, 444
BseLI	CCNNNNNNNGG	3 cut(s)	223, 284, 431
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	2 cut(s)	191, 255
BseNI	ACTGG	3 cut(s)	112, 192, 511
BseXI	GCAGC	2 cut(s)	304, 727
BseYI	CCCAGC	1 cut(s)	963
BsgI	GTGCAG	1 cut(s)	800
Bsh1236I	CGCG	1 cut(s)	753
BshFI	GGCC	3 cut(s)	148, 423, 706
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	3 cut(s)	223, 284, 431
BsmAI	GTCTC	4 cut(s)	578, 689, 724, 839
BsnI	GGCC	3 cut(s)	148, 423, 706
Bso31I	GGTCTC	1 cut(s)	839
Bsp119I	TTCGAA	1 cut(s)	573
Bsp143I	GATC	6 cut(s)	43, 169, 268, 340, 857, 936
Bsp19I	CCATGG	2 cut(s)	47, 403
BspACI	CCGC	3 cut(s)	145, 751, 753
BspANI	GGCC	3 cut(s)	148, 423, 706
BspCNI	CTCAG	2 cut(s)	190, 256
BspFNI	CGCG	1 cut(s)	753
BspLI	GGNNCC	3 cut(s)	424, 607, 969
BspMAI	CTGCAG	1 cut(s)	856
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	4 cut(s)	38, 276, 865, 931
BspT104I	TTCGAA	1 cut(s)	573
BspTNI	GGTCTC	1 cut(s)	839
BsrBI	CCGCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	112, 192, 511
BssECI	CCNNGG	5 cut(s)	47, 81, 403, 751, 940
BssMI	GATC	6 cut(s)	43, 169, 268, 340, 857, 936
BssT1I	CCWWGG	2 cut(s)	47, 403
Bst2UI	CCWGG	4 cut(s)	279, 458, 942, 972
Bst4CI	ACNGT	3 cut(s)	82, 499, 700
Bst6I	CTCTTC	2 cut(s)	570, 687
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstBI	TTCGAA	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	177, 200, 264
BstDSI	CCRYGG	4 cut(s)	47, 81, 403, 751
BstF5I	GGATG	2 cut(s)	413, 444
BstFNI	CGCG	1 cut(s)	753
BstKTI	GATC	6 cut(s)	46, 172, 271, 343, 860, 939
BstMAI	GTCTC	4 cut(s)	578, 689, 724, 839
BstMBI	GATC	6 cut(s)	43, 169, 268, 340, 857, 936
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 821, 851
BstNI	CCWGG	4 cut(s)	279, 458, 942, 972
BstSCI	CCNGG	4 cut(s)	277, 456, 940, 970
BstSFI	CTRYAG	1 cut(s)	852
BstUI	CGCG	1 cut(s)	753
BstV1I	GCAGC	2 cut(s)	304, 727
BstX2I	RGATCY	2 cut(s)	268, 340
BstYI	RGATCY	2 cut(s)	268, 340
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	148, 423, 706
BtgI	CCRYGG	4 cut(s)	47, 81, 403, 751
BtsCI	GGATG	2 cut(s)	413, 444
BtsIMutI	CAGTG	2 cut(s)	504, 705
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	1 cut(s)	290
CaiI	CAGNNNCTG	2 cut(s)	685, 764
Cfr13I	GGNCC	5 cut(s)	422, 441, 476, 509, 605
Cfr42I	CCGCGG	1 cut(s)	754
Csp6I	GTAC	3 cut(s)	94, 302, 896
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	7 cut(s)	48, 223, 404, 588, 861, 959, 979
CviQI	GTAC	3 cut(s)	94, 302, 896
DdeI	CTNAG	3 cut(s)	177, 200, 264
DpnI	GATC	6 cut(s)	45, 171, 270, 342, 859, 938
DpnII	GATC	6 cut(s)	43, 169, 268, 340, 857, 936
EaeI	YGGCCR	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	570, 687
EarI	CTCTTC	2 cut(s)	570, 687
Eco130I	CCWWGG	2 cut(s)	47, 403
Eco31I	GGTCTC	1 cut(s)	839
Eco47I	GGWCC	4 cut(s)	441, 476, 509, 605
Eco81I	CCTNAGG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRII	CCWGG	4 cut(s)	277, 456, 940, 970
EcoT14I	CCWWGG	2 cut(s)	47, 403
ErhI	CCWWGG	2 cut(s)	47, 403
FaeI	CATG	7 cut(s)	51, 226, 407, 591, 864, 962, 982
FatI	CATG	7 cut(s)	47, 222, 403, 587, 860, 958, 978
Fnu4HI	GCNGC	3 cut(s)	146, 293, 741
FokI	GGATG	2 cut(s)	420, 431
Fsp4HI	GCNGC	3 cut(s)	146, 293, 741
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	3 cut(s)	146, 293, 741
GsaI	CCCAGC	1 cut(s)	967
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	3 cut(s)	148, 423, 706
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	7 cut(s)	51, 226, 407, 591, 864, 962, 982
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	3 cut(s)	308, 399, 905
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	3 cut(s)	70, 717, 995
Hpy166II	GTNNAC	4 cut(s)	85, 358, 398, 502
Hpy188I	TCNGA	5 cut(s)	180, 434, 453, 467, 1018
Hpy188III	TCNNGA	4 cut(s)	31, 338, 765, 928
Hpy8I	GTNNAC	4 cut(s)	85, 358, 398, 502
HpyAV	CCTTC	4 cut(s)	37, 458, 589, 1001
HpyCH4III	ACNGT	3 cut(s)	82, 499, 700
HpyCH4V	TGCA	6 cut(s)	524, 671, 743, 781, 845, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 821, 851
HpyF3I	CTNAG	3 cut(s)	177, 200, 264
Hsp92II	CATG	7 cut(s)	51, 226, 407, 591, 864, 962, 982
KspI	CCGCGG	1 cut(s)	754
Kzo9I	GATC	6 cut(s)	43, 169, 268, 340, 857, 936
Lsp1109I	GCAGC	2 cut(s)	304, 727
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	723
MalI	GATC	6 cut(s)	45, 171, 270, 342, 859, 938
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	6 cut(s)	43, 169, 268, 340, 857, 936
MboII	GAAGA	4 cut(s)	587, 604, 704, 780
MflI	RGATCY	2 cut(s)	268, 340
MluCI	AATT	4 cut(s)	135, 297, 569, 655
MlyI	GAGTC	2 cut(s)	317, 393
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	9 cut(s)	13, 84, 259, 278, 346, 467, 503, 571, 675
MseI	TTAA	3 cut(s)	195, 624, 921
MspA1I	CMGCKG	1 cut(s)	753
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	4 cut(s)	279, 458, 942, 972
MvaI	CCWGG	4 cut(s)	279, 458, 942, 972
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	3 cut(s)	126, 821, 851
NcoI	CCATGG	2 cut(s)	47, 403
NdeII	GATC	6 cut(s)	43, 169, 268, 340, 857, 936
NlaIII	CATG	7 cut(s)	51, 226, 407, 591, 864, 962, 982
NlaIV	GGNNCC	3 cut(s)	424, 607, 969
NmuCI	GTSAC	1 cut(s)	723
NspV	TTCGAA	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	905
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	147, 294, 742
PleI	GAGTC	2 cut(s)	316, 393
PpsI	GAGTC	2 cut(s)	316, 393
PpuMI	RGGWCCY	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	476
Psp6I	CCWGG	4 cut(s)	277, 456, 940, 970
PspFI	CCCAGC	1 cut(s)	963
PspGI	CCWGG	4 cut(s)	277, 456, 940, 970
PspN4I	GGNNCC	3 cut(s)	424, 607, 969
PspPI	GGNCC	5 cut(s)	422, 441, 476, 509, 605
PspPPI	RGGWCCY	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	856
PstNI	CAGNNNCTG	2 cut(s)	685, 764
PsuI	RGATCY	2 cut(s)	268, 340
RsaI	GTAC	3 cut(s)	95, 303, 897
RsaNI	GTAC	3 cut(s)	94, 302, 896
SacII	CCGCGG	1 cut(s)	754
SaqAI	TTAA	3 cut(s)	195, 624, 921
SatI	GCNGC	3 cut(s)	146, 293, 741
Sau3AI	GATC	6 cut(s)	43, 169, 268, 340, 857, 936
Sau96I	GGNCC	5 cut(s)	422, 441, 476, 509, 605
SchI	GAGTC	2 cut(s)	317, 393
ScrFI	CCNGG	4 cut(s)	279, 458, 942, 972
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	852
Sfr303I	CCGCGG	1 cut(s)	754
SfuI	TTCGAA	1 cut(s)	573
SgrBI	CCGCGG	1 cut(s)	754
SinI	GGWCC	4 cut(s)	441, 476, 509, 605
Sse9I	AATT	4 cut(s)	135, 297, 569, 655
SsiI	CCGC	3 cut(s)	145, 751, 753
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	4 cut(s)	277, 456, 940, 970
StyI	CCWWGG	2 cut(s)	47, 403
TaaI	ACNGT	3 cut(s)	82, 499, 700
TaqI	TCGA	3 cut(s)	58, 168, 573
TasI	AATT	4 cut(s)	135, 297, 569, 655
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	905
Tru1I	TTAA	3 cut(s)	195, 624, 921
Tru9I	TTAA	3 cut(s)	195, 624, 921
TscAI	CASTG	2 cut(s)	511, 705
TseFI	GTSAC	1 cut(s)	723
TseI	GCWGC	2 cut(s)	292, 740
Tsp45I	GTSAC	1 cut(s)	723
TspDTI	ATGAA	3 cut(s)	17, 947, 967
TspRI	CASTG	2 cut(s)	511, 705
Van91I	CCANNNNNTGG	1 cut(s)	223
VpaK11BI	GGWCC	4 cut(s)	441, 476, 509, 605
XapI	RAATTY	1 cut(s)	135
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.