Rhamnogalacturonate lyase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g01850 |
| malus_domestica | MD10G1323400.v1.1 |
| prunus_persica | Prupe.4G018900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0002721 |
| rosa_laevigata | RLG00000031054 |
| rosa_multiflora | Rmu_sc0018891.1_g000001 Rmu_sc0018892.1_g000001 Rmu_sc0037618.1_g000002 Rmu_sc0041618.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00073160 |
| rosa_rugosa | Rorug04G0398700 |
| rosa_samantha | Rh5AG021900 Rh5BG024800 Rh5CG024200 Rh5DG023200 |
| rosa_wichuraiana | Rw5G002040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 770 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 469 |
| AccI | GTMKAC | 3 cut(s) | 864, 1536, 1741 |
| AciI | CCGC | 4 cut(s) | 320, 1263, 1893, 1899 |
| AclWI | GGATC | 7 cut(s) | 29, 522, 1098, 1111, 1207, 1220, 1276 |
| AcsI | RAATTY | 2 cut(s) | 184, 1749 |
| AcuI | CTGAAG | 2 cut(s) | 1119, 1626 |
| AdeI | CACNNNGTG | 2 cut(s) | 1699, 1856 |
| AfaI | GTAC | 5 cut(s) | 95, 341, 549, 1464, 1723 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 469, 530, 677, 1313 |
| AgsI | TTSAA | 7 cut(s) | 277, 624, 821, 938, 1591, 1706, 1714 |
| AjnI | CCWGG | 8 cut(s) | 190, 523, 702, 1026, 1106, 1186, 1216, 1224 |
| AluBI | AGCT | 8 cut(s) | 70, 227, 261, 302, 812, 1402, 1776, 1835 |
| AluI | AGCT | 8 cut(s) | 70, 227, 261, 302, 812, 1402, 1776, 1835 |
| Alw21I | GWGCWC | 1 cut(s) | 1695 |
| Alw26I | GTCTC | 4 cut(s) | 824, 935, 970, 1621 |
| AlwI | GGATC | 7 cut(s) | 29, 522, 1098, 1111, 1207, 1220, 1276 |
| AoxI | GGCC | 6 cut(s) | 83, 667, 721, 850, 950, 1078 |
| ApeKI | GCWGC | 2 cut(s) | 986, 1497 |
| ApoI | RAATTY | 2 cut(s) | 184, 1749 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1508, 1540 |
| AspLEI | GCGC | 1 cut(s) | 898 |
| AspS9I | GGNCC | 6 cut(s) | 668, 722, 755, 851, 1316, 1657 |
| AsuC2I | CCSGG | 1 cut(s) | 1651 |
| AsuHPI | GGTGA | 5 cut(s) | 963, 1159, 1241, 1246, 1856 |
| AvaII | GGWCC | 3 cut(s) | 755, 1316, 1657 |
| AxyI | CCTNAGG | 1 cut(s) | 510 |
| BamHI | GGATCC | 2 cut(s) | 1103, 1212 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 449, 481, 1185, 1217 |
| Bbv12I | GWGCWC | 1 cut(s) | 1695 |
| BbvI | GCAGC | 2 cut(s) | 973, 1509 |
| BccI | CCATC | 8 cut(s) | 301, 427, 584, 632, 648, 1178, 1265, 1307 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1635, 1669 |
| BciT130I | CCWGG | 8 cut(s) | 192, 525, 704, 1028, 1108, 1188, 1218, 1226 |
| BciVI | GTATCC | 1 cut(s) | 158 |
| BcnI | CCSGG | 1 cut(s) | 1651 |
| BcoDI | GTCTC | 4 cut(s) | 824, 935, 970, 1621 |
| BfaI | CTAG | 4 cut(s) | 156, 566, 1697, 1836 |
| BfmI | CTRYAG | 1 cut(s) | 370 |
| BfuAI | ACCTGC | 1 cut(s) | 770 |
| BfuI | GTATCC | 1 cut(s) | 158 |
| BglII | AGATCT | 1 cut(s) | 1907 |
| BisI | GCNGC | 3 cut(s) | 320, 987, 1498 |
| BlsI | GCNGC | 3 cut(s) | 321, 988, 1499 |
| Bme1390I | CCNGG | 9 cut(s) | 192, 525, 704, 1028, 1108, 1188, 1218, 1226, 1651 |
| Bme18I | GGWCC | 3 cut(s) | 755, 1316, 1657 |
| BmgT120I | GGNCC | 6 cut(s) | 668, 722, 755, 851, 1316, 1657 |
| BmiI | GGNNCC | 7 cut(s) | 29, 670, 784, 853, 1105, 1214, 1890 |
| BmrFI | CCNGG | 9 cut(s) | 192, 525, 704, 1028, 1108, 1188, 1218, 1226, 1651 |
| BmrI | ACTGGG | 1 cut(s) | 178 |
| BmsI | GCATC | 3 cut(s) | 114, 904, 1837 |
| BmuI | ACTGGG | 1 cut(s) | 178 |
| BpmI | CTGGAG | 2 cut(s) | 1209, 1904 |
| BpuEI | CTTGAG | 2 cut(s) | 72, 288 |
| BpuMI | CCSGG | 1 cut(s) | 1651 |
| BsaBI | GATNNNNATC | 1 cut(s) | 612 |
| BsaJI | CCNNGG | 5 cut(s) | 649, 1186, 1216, 1225, 1237 |
| BsaWI | WCCGGW | 1 cut(s) | 1157 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 469, 530, 677, 1313 |
| Bse118I | RCCGGY | 1 cut(s) | 1764 |
| Bse21I | CCTNAGG | 1 cut(s) | 510 |
| Bse3DI | GCAATG | 2 cut(s) | 259, 721 |
| Bse8I | GATNNNNATC | 1 cut(s) | 612 |
| BseBI | CCWGG | 8 cut(s) | 192, 525, 704, 1028, 1108, 1188, 1218, 1226 |
| BseDI | CCNNGG | 5 cut(s) | 649, 1186, 1216, 1225, 1237 |
| BseGI | GGATG | 3 cut(s) | 407, 438, 659 |
| BseJI | GATNNNNATC | 1 cut(s) | 612 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 469, 530, 677, 1313 |
| BseMI | GCAATG | 2 cut(s) | 259, 721 |
| BseMII | CTCAG | 3 cut(s) | 14, 437, 501 |
| BseXI | GCAGC | 2 cut(s) | 973, 1509 |
| BseYI | CCCAGC | 1 cut(s) | 698 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1655 |
| BshFI | GGCC | 6 cut(s) | 85, 669, 723, 852, 952, 1080 |
| BsiEI | CGRYCG | 1 cut(s) | 1655 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1695 |
| BsiSI | CCGG | 3 cut(s) | 1158, 1651, 1765 |
| BslFI | GGGAC | 1 cut(s) | 1460 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 469, 530, 677, 1313 |
| BsmAI | GTCTC | 4 cut(s) | 824, 935, 970, 1621 |
| BsmFI | GGGAC | 1 cut(s) | 1460 |
| BsnI | GGCC | 6 cut(s) | 85, 669, 723, 852, 952, 1080 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1695 |
| Bsp1407I | TGTACA | 1 cut(s) | 1462 |
| Bsp19I | CCATGG | 1 cut(s) | 649 |
| BspACI | CCGC | 4 cut(s) | 320, 1263, 1893, 1899 |
| BspANI | GGCC | 6 cut(s) | 85, 669, 723, 852, 952, 1080 |
| BspCNI | CTCAG | 3 cut(s) | 15, 436, 502 |
| BspLI | GGNNCC | 7 cut(s) | 29, 670, 784, 853, 1105, 1214, 1890 |
| BspMI | ACCTGC | 1 cut(s) | 770 |
| BspPI | GGATC | 7 cut(s) | 29, 522, 1098, 1111, 1207, 1220, 1276 |
| BsrDI | GCAATG | 2 cut(s) | 259, 721 |
| BsrFI | RCCGGY | 1 cut(s) | 1764 |
| BsrGI | TGTACA | 1 cut(s) | 1462 |
| BssAI | RCCGGY | 1 cut(s) | 1764 |
| BssECI | CCNNGG | 5 cut(s) | 649, 1186, 1216, 1225, 1237 |
| BssNAI | GTATAC | 1 cut(s) | 865 |
| BssT1I | CCWWGG | 2 cut(s) | 649, 1237 |
| Bst1107I | GTATAC | 1 cut(s) | 865 |
| Bst2UI | CCWGG | 8 cut(s) | 192, 525, 704, 1028, 1108, 1188, 1218, 1226 |
| Bst4CI | ACNGT | 3 cut(s) | 374, 745, 1735 |
| Bst6I | CTCTTC | 3 cut(s) | 445, 816, 933 |
| BstAUI | TGTACA | 1 cut(s) | 1462 |
| BstDEI | CTNAG | 5 cut(s) | 23, 262, 323, 423, 510 |
| BstDSI | CCRYGG | 1 cut(s) | 649 |
| BstF5I | GGATG | 3 cut(s) | 407, 438, 659 |
| BstHHI | GCGC | 1 cut(s) | 898 |
| BstMAI | GTCTC | 4 cut(s) | 824, 935, 970, 1621 |
| BstMCI | CGRYCG | 1 cut(s) | 1655 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 258, 720, 1067 |
| BstNI | CCWGG | 8 cut(s) | 192, 525, 704, 1028, 1108, 1188, 1218, 1226 |
| BstSCI | CCNGG | 9 cut(s) | 190, 523, 702, 1026, 1106, 1186, 1216, 1224, 1649 |
| BstSFI | CTRYAG | 1 cut(s) | 370 |
| BstV1I | GCAGC | 2 cut(s) | 973, 1509 |
| BstX2I | RGATCY | 5 cut(s) | 34, 514, 1103, 1212, 1907 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 794, 1326, 1575 |
| BstYI | RGATCY | 5 cut(s) | 34, 514, 1103, 1212, 1907 |
| BstZ17I | GTATAC | 1 cut(s) | 865 |
| Bsu36I | CCTNAGG | 1 cut(s) | 510 |
| BsuI | GTATCC | 1 cut(s) | 158 |
| BsuRI | GGCC | 6 cut(s) | 85, 669, 723, 852, 952, 1080 |
| BtgI | CCRYGG | 1 cut(s) | 649 |
| BtsCI | GGATG | 3 cut(s) | 407, 438, 659 |
| BtsIMutI | CAGTG | 2 cut(s) | 750, 1455 |
| BveI | ACCTGC | 1 cut(s) | 770 |
| CfoI | GCGC | 1 cut(s) | 898 |
| Cfr10I | RCCGGY | 1 cut(s) | 1764 |
| Cfr13I | GGNCC | 6 cut(s) | 668, 722, 755, 851, 1316, 1657 |
| Csp6I | GTAC | 5 cut(s) | 94, 340, 548, 1463, 1722 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 622, 657 |
| CviAII | CATG | 9 cut(s) | 245, 469, 650, 779, 1205, 1532, 1575, 1670, 1754 |
| CviQI | GTAC | 5 cut(s) | 94, 340, 548, 1463, 1722 |
| DdeI | CTNAG | 5 cut(s) | 23, 262, 323, 423, 510 |
| DraIII | CACNNNGTG | 2 cut(s) | 1699, 1856 |
| Eam1104I | CTCTTC | 3 cut(s) | 445, 816, 933 |
| EarI | CTCTTC | 3 cut(s) | 445, 816, 933 |
| Eco130I | CCWWGG | 2 cut(s) | 649, 1237 |
| Eco147I | AGGCCT | 1 cut(s) | 85 |
| Eco32I | GATATC | 2 cut(s) | 139, 175 |
| Eco47I | GGWCC | 3 cut(s) | 755, 1316, 1657 |
| Eco57I | CTGAAG | 2 cut(s) | 1119, 1626 |
| Eco81I | CCTNAGG | 1 cut(s) | 510 |
| EcoO109I | RGGNCCY | 1 cut(s) | 722 |
| EcoRI | GAATTC | 1 cut(s) | 1749 |
| EcoRII | CCWGG | 8 cut(s) | 190, 523, 702, 1026, 1106, 1186, 1216, 1224 |
| EcoRV | GATATC | 2 cut(s) | 139, 175 |
| EcoT14I | CCWWGG | 2 cut(s) | 649, 1237 |
| EcoT22I | ATGCAT | 1 cut(s) | 1072 |
| ErhI | CCWWGG | 2 cut(s) | 649, 1237 |
| FaeI | CATG | 9 cut(s) | 248, 472, 653, 782, 1208, 1535, 1578, 1673, 1757 |
| FaqI | GGGAC | 1 cut(s) | 1460 |
| FatI | CATG | 9 cut(s) | 244, 468, 649, 778, 1204, 1531, 1574, 1669, 1753 |
| FauI | CCCGC | 1 cut(s) | 1900 |
| FauNDI | CATATG | 1 cut(s) | 1072 |
| FblI | GTMKAC | 3 cut(s) | 864, 1536, 1741 |
| Fnu4HI | GCNGC | 3 cut(s) | 320, 987, 1498 |
| FokI | GGATG | 3 cut(s) | 414, 445, 666 |
| Fsp4HI | GCNGC | 3 cut(s) | 320, 987, 1498 |
| FspBI | CTAG | 4 cut(s) | 156, 566, 1697, 1836 |
| GlaI | GCGC | 1 cut(s) | 897 |
| GluI | GCNGC | 3 cut(s) | 320, 987, 1498 |
| GsaI | CCCAGC | 1 cut(s) | 702 |
| GsuI | CTGGAG | 2 cut(s) | 1209, 1904 |
| HaeIII | GGCC | 6 cut(s) | 85, 669, 723, 852, 952, 1080 |
| HapII | CCGG | 3 cut(s) | 1158, 1651, 1765 |
| HhaI | GCGC | 1 cut(s) | 898 |
| Hin1II | CATG | 9 cut(s) | 248, 472, 653, 782, 1208, 1535, 1578, 1673, 1757 |
| Hin6I | GCGC | 1 cut(s) | 896 |
| HinP1I | GCGC | 1 cut(s) | 896 |
| HincII | GTYRAC | 3 cut(s) | 604, 1396, 1742 |
| HindII | GTYRAC | 3 cut(s) | 604, 1396, 1742 |
| HindIII | AAGCTT | 1 cut(s) | 68 |
| HinfI | GANTC | 4 cut(s) | 152, 554, 645, 1758 |
| HpaII | CCGG | 3 cut(s) | 1158, 1651, 1765 |
| HphI | GGTGA | 5 cut(s) | 963, 1159, 1241, 1246, 1856 |
| Hpy166II | GTNNAC | 8 cut(s) | 604, 748, 865, 1381, 1396, 1465, 1537, 1742 |
| Hpy188I | TCNGA | 4 cut(s) | 426, 1293, 1657, 1912 |
| Hpy188III | TCNNGA | 7 cut(s) | 200, 277, 399, 584, 1011, 1174, 1373 |
| Hpy8I | GTNNAC | 8 cut(s) | 604, 748, 865, 1381, 1396, 1465, 1537, 1742 |
| HpyAV | CCTTC | 5 cut(s) | 405, 865, 1094, 1495, 1574 |
| HpyCH4III | ACNGT | 3 cut(s) | 374, 745, 1735 |
| HpyCH4V | TGCA | 4 cut(s) | 380, 1070, 1091, 1850 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 258, 720, 1067 |
| HpyF3I | CTNAG | 5 cut(s) | 23, 262, 323, 423, 510 |
| Hsp92II | CATG | 9 cut(s) | 248, 472, 653, 782, 1208, 1535, 1578, 1673, 1757 |
| HspAI | GCGC | 1 cut(s) | 896 |
| LmnI | GCTCC | 2 cut(s) | 224, 1894 |
| Lsp1109I | GCAGC | 2 cut(s) | 973, 1509 |
| LweI | GCATC | 3 cut(s) | 114, 904, 1837 |
| MaeI | CTAG | 4 cut(s) | 156, 566, 1697, 1836 |
| MaeIII | GTNAC | 2 cut(s) | 1361, 1603 |
| MboII | GAAGA | 6 cut(s) | 22, 462, 812, 833, 950, 1026 |
| MfeI | CAATTG | 1 cut(s) | 1635 |
| MflI | RGATCY | 5 cut(s) | 34, 514, 1103, 1212, 1907 |
| MhlI | GDGCHC | 1 cut(s) | 1695 |
| MluCI | AATT | 8 cut(s) | 75, 184, 314, 543, 1472, 1635, 1749, 1913 |
| MlyI | GAGTC | 2 cut(s) | 654, 1752 |
| MmeI | TCCRAC | 4 cut(s) | 782, 1343, 1592, 1635 |
| Mph1103I | ATGCAT | 1 cut(s) | 1072 |
| MseI | TTAA | 7 cut(s) | 98, 347, 570, 870, 1410, 1674, 1803 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1674 |
| MspA1I | CMGCKG | 1 cut(s) | 1776 |
| MspI | CCGG | 3 cut(s) | 1158, 1651, 1765 |
| MspR9I | CCNGG | 9 cut(s) | 192, 525, 704, 1028, 1108, 1188, 1218, 1226, 1651 |
| MunI | CAATTG | 1 cut(s) | 1635 |
| MvaI | CCWGG | 8 cut(s) | 192, 525, 704, 1028, 1108, 1188, 1218, 1226 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 258, 720, 1067 |
| NciI | CCSGG | 1 cut(s) | 1651 |
| NcoI | CCATGG | 1 cut(s) | 649 |
| NdeI | CATATG | 1 cut(s) | 1072 |
| NlaIII | CATG | 9 cut(s) | 248, 472, 653, 782, 1208, 1535, 1578, 1673, 1757 |
| NlaIV | GGNNCC | 7 cut(s) | 29, 670, 784, 853, 1105, 1214, 1890 |
| NsiI | ATGCAT | 1 cut(s) | 1072 |
| PceI | AGGCCT | 1 cut(s) | 85 |
| PfeI | GAWTC | 2 cut(s) | 152, 554 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 469 |
| PfoI | TCCNGGA | 1 cut(s) | 1026 |
| PkrI | GCNGC | 3 cut(s) | 321, 988, 1499 |
| PleI | GAGTC | 2 cut(s) | 653, 1752 |
| PpsI | GAGTC | 2 cut(s) | 653, 1752 |
| Psp6I | CCWGG | 8 cut(s) | 190, 523, 702, 1026, 1106, 1186, 1216, 1224 |
| PspFI | CCCAGC | 1 cut(s) | 698 |
| PspGI | CCWGG | 8 cut(s) | 190, 523, 702, 1026, 1106, 1186, 1216, 1224 |
| PspN4I | GGNNCC | 7 cut(s) | 29, 670, 784, 853, 1105, 1214, 1890 |
| PspPI | GGNCC | 6 cut(s) | 668, 722, 755, 851, 1316, 1657 |
| PsuI | RGATCY | 5 cut(s) | 34, 514, 1103, 1212, 1907 |
| PvuII | CAGCTG | 1 cut(s) | 1776 |
| RsaI | GTAC | 5 cut(s) | 95, 341, 549, 1464, 1723 |
| RsaNI | GTAC | 5 cut(s) | 94, 340, 548, 1463, 1722 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1674 |
| SalI | GTCGAC | 1 cut(s) | 1740 |
| SaqAI | TTAA | 7 cut(s) | 98, 347, 570, 870, 1410, 1674, 1803 |
| SatI | GCNGC | 3 cut(s) | 320, 987, 1498 |
| Sau96I | GGNCC | 6 cut(s) | 668, 722, 755, 851, 1316, 1657 |
| SchI | GAGTC | 2 cut(s) | 654, 1752 |
| ScrFI | CCNGG | 9 cut(s) | 192, 525, 704, 1028, 1108, 1188, 1218, 1226, 1651 |
| SduI | GDGCHC | 1 cut(s) | 1695 |
| SfaNI | GCATC | 3 cut(s) | 114, 904, 1837 |
| SfcI | CTRYAG | 1 cut(s) | 370 |
| SinI | GGWCC | 3 cut(s) | 755, 1316, 1657 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1674 |
| SmlI | CTYRAG | 2 cut(s) | 87, 303 |
| SmoI | CTYRAG | 2 cut(s) | 87, 303 |
| Sse9I | AATT | 8 cut(s) | 75, 184, 314, 543, 1472, 1635, 1749, 1913 |
| SseBI | AGGCCT | 1 cut(s) | 85 |
| SsiI | CCGC | 4 cut(s) | 320, 1263, 1893, 1899 |
| SspMI | CTAG | 4 cut(s) | 156, 566, 1697, 1836 |
| StuI | AGGCCT | 1 cut(s) | 85 |
| StyD4I | CCNGG | 9 cut(s) | 190, 523, 702, 1026, 1106, 1186, 1216, 1224, 1649 |
| StyI | CCWWGG | 2 cut(s) | 649, 1237 |
| TaaI | ACNGT | 3 cut(s) | 374, 745, 1735 |
| TaqI | TCGA | 2 cut(s) | 1348, 1741 |
| TasI | AATT | 8 cut(s) | 75, 184, 314, 543, 1472, 1635, 1749, 1913 |
| TatI | WGTACW | 1 cut(s) | 1462 |
| TauI | GCSGC | 1 cut(s) | 322 |
| TfiI | GAWTC | 2 cut(s) | 152, 554 |
| Tru1I | TTAA | 7 cut(s) | 98, 347, 570, 870, 1410, 1674, 1803 |
| Tru9I | TTAA | 7 cut(s) | 98, 347, 570, 870, 1410, 1674, 1803 |
| TscAI | CASTG | 2 cut(s) | 757, 1462 |
| TseI | GCWGC | 2 cut(s) | 986, 1497 |
| TspDTI | ATGAA | 7 cut(s) | 165, 261, 498, 767, 1193, 1477, 1742 |
| TspGWI | ACGGA | 1 cut(s) | 1761 |
| TspRI | CASTG | 2 cut(s) | 757, 1462 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 469 |
| VpaK11BI | GGWCC | 3 cut(s) | 755, 1316, 1657 |
| XapI | RAATTY | 2 cut(s) | 184, 1749 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1515 |
| XmiI | GTMKAC | 3 cut(s) | 864, 1536, 1741 |
| XspI | CTAG | 4 cut(s) | 156, 566, 1697, 1836 |
| Zsp2I | ATGCAT | 1 cut(s) | 1072 |