Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013019

Physical Location & Seq

Genomic Coordinates Forward (+)

1365621 .. 1367459

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGATAGCTTCTTCCACCTCCACTCTCCGTTTCCAACTCGCCGTCTTCTACCGCATACCCAAATCTCCAAAGGCCTCATACGAACCTGCCTCCGAGCCTCAGCCTCGGAAATTCAGGCCCAGCCCTCAGCTAAACCGATGGTCCCGTGCCCGGTCCTTGCGCTCCGGCCGGAAATTCGACCGGACCGGCCAACATTCACAACAACTCGACCCAAACCCTCCTCTTCAGCTCAAAGAGCAAGTCTCGCCGGAGCAAAAAGATACCACTTTAACGGCGAGTAACGGCGGTGCTGACGTGGACTTGACGGCCGGGAAGTCGATTTATATGGTTTCCGACGGAACTGGCTGGACGGTGGAACACTCCGTCGGCGCAGCTTTGGGCCAATTCGAGCATTGCTTGGTCGATCGGAACTGCGCTGTGAATACCCATTTGTTCTCTGGGATTGATGACGTGGGGCAGTTGATGGAGATTATAAAGCAAGCAGCTAAGGAAGGAGCTTTGGTGGTGTACACATTAGCTGACCCATCAATGGCTGAGTCTGCTAAACAAGCTTGTGAAATTTGGGGGATACCCAACATTGATATGTTAGGTCCAATTACACAGTCCATAGCTTCACATTTGAATGTGTCACCTTCTGGGGGTCCCAGGAGGTACCCTCTTACAGATGAGTATTTTCGGAGGATCGAGGCAATTGAGTTTACTATCAAGCAGGATGATGGGGCATTGCCCCAGAACTTGCACAAGGCTGACATTGTGCTTGCAGGGGTTTCGAGAACGGGGAAGACCCCGTTGTCGATTTATTTGTCACAGAAGGGGTACAAGGTGGCTAATGTGCCTATTGTGATGGGGGTTCCTTTGCCAAAGGCTCTTTTTGAGATCGACCCTGAGAAGGTTTTTGGCTTGACTATTAATCCTGTGGTGTTGCACACGATTAGGAGGGCGAGGGCTAAGAGTTTGGGGTTTGGTGATGGAGTGAGGAGTAACTACTCTGAGATGGATCATGTCCGAGAGGAGCTTGAGTTTGCGCGAAAGATTCTTGCACAAAATCCTGTCTGGCCAGTAATCGAAGTGACAGGCAAAGCAGTAGAAGAAACTGCAGCTGTTGTGTTGAGGCTTTATCATGACAGGAAGAACAAGTGCTCGATGCCAAGAATATCGAAACGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinase-PPPase

Protein Analysis

390

Amino Acids

43.05

Weight (kDa)

9.19

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinase-PPPase	PF03618	107 - 370	3.2e-87	Kinase/pyrophosphorylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21210 AT4G21210
fragaria_vesca	FvH4_3g02680
malus_domestica	MD05G1340900.v1.1
prunus_persica	Prupe.4G026400_v2.0.a1
pyrus_communis	pycom05g31020 pycom10g26650
rosa_chinensis	RchiOBHm_Chr5g0004011
rosa_laevigata	RLG00000031196
rosa_multiflora	Rmu_co8460589.1_g000001 Rmu_sc0000547.1_g000016
rosa_roxburghii	Rroxscaffold_1G00071960
rosa_rugosa	Rorug04G0409000
rosa_samantha	Rh5AG036700 Rh5BG035800 Rh5CG039400 Rh5DG035200
rosa_wichuraiana	Rw5G003330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	473
AasI	GACNNNNNNGTC	1 cut(s)	790
Acc36I	ACCTGC	1 cut(s)	94
Acc65I	GGTACC	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	651
AccII	CGCG	1 cut(s)	1027
AciI	CCGC	2 cut(s)	52, 285
AclI	AACGTT	1 cut(s)	1162
AclWI	GGATC	2 cut(s)	689, 1005
AcoI	YGGCCR	4 cut(s)	166, 187, 306, 1055
AcsI	RAATTY	3 cut(s)	110, 173, 558
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	3 cut(s)	509, 653, 818
AfiI	CCNNNNNNNGG	4 cut(s)	150, 529, 638, 889
AgsI	TTSAA	1 cut(s)	622
AjiI	CACGTC	2 cut(s)	295, 451
AjnI	CCWGG	1 cut(s)	644
Alw21I	GWGCWC	1 cut(s)	1142
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	2 cut(s)	689, 1005
AoxI	GGCC	7 cut(s)	72, 116, 166, 187, 306, 379, 1055
ApeKI	GCWGC	3 cut(s)	371, 482, 1097
ApoI	RAATTY	3 cut(s)	110, 173, 558
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AseI	ATTAAT	1 cut(s)	909
Asp718I	GGTACC	1 cut(s)	651
AspLEI	GCGC	4 cut(s)	162, 371, 416, 1027
AspS9I	GGNCC	7 cut(s)	117, 141, 153, 183, 379, 590, 641
AsuC2I	CCSGG	2 cut(s)	151, 310
AsuHPI	GGTGA	2 cut(s)	621, 977
AvaII	GGWCC	5 cut(s)	141, 153, 183, 590, 641
BaeGI	GKGCMC	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	1057
BanI	GGYRCC	1 cut(s)	651
BbsI	GAAGAC	2 cut(s)	37, 788
Bbv12I	GWGCWC	1 cut(s)	1142
BbvCI	CCTCAGC	2 cut(s)	99, 126
BbvI	GCAGC	3 cut(s)	383, 494, 1109
BccI	CCATC	7 cut(s)	132, 457, 532, 710, 838, 962, 988
BceAI	ACGGC	4 cut(s)	26, 288, 298, 321
BcgI	CGANNNNNNTGC	2 cut(s)	750, 784
BciT130I	CCWGG	1 cut(s)	646
BciVI	GTATCC	1 cut(s)	561
BcnI	CCSGG	2 cut(s)	151, 310
BcoDI	GTCTC	1 cut(s)	247
BfmI	CTRYAG	1 cut(s)	1095
BfuAI	ACCTGC	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	561
BisI	GCNGC	3 cut(s)	372, 483, 1098
BlsI	GCNGC	3 cut(s)	373, 484, 1099
Bme1390I	CCNGG	3 cut(s)	151, 310, 646
Bme18I	GGWCC	5 cut(s)	141, 153, 183, 590, 641
BmgBI	CACGTC	2 cut(s)	295, 451
BmgT120I	GGNCC	7 cut(s)	117, 141, 153, 183, 379, 590, 641
BmiI	GGNNCC	5 cut(s)	143, 642, 643, 653, 852
BmrFI	CCNGG	3 cut(s)	151, 310, 646
BmsI	GCATC	1 cut(s)	1134
BpiI	GAAGAC	2 cut(s)	37, 788
BplI	GAGNNNNNCTC	4 cut(s)	227, 259, 640, 672
Bpu10I	CCTNAGC	3 cut(s)	99, 126, 486
BpuEI	CTTGAG	1 cut(s)	1037
BpuMI	CCSGG	2 cut(s)	151, 310
BsaJI	CCNNGG	2 cut(s)	104, 644
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	4 cut(s)	486, 516, 1004, 1034
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 529, 638, 889
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	346, 1058
Bse3DI	GCAATG	2 cut(s)	391, 722
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	2 cut(s)	104, 644
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	4 cut(s)	150, 529, 638, 889
BseMI	GCAATG	2 cut(s)	391, 722
BseMII	CTCAG	5 cut(s)	113, 140, 525, 876, 981
BseNI	ACTGG	2 cut(s)	346, 1058
BseRI	GAGGAG	3 cut(s)	210, 991, 1025
BseSI	GKGCMC	1 cut(s)	151
BseX3I	CGGCCG	2 cut(s)	166, 306
BseXI	GCAGC	3 cut(s)	383, 494, 1109
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	1027
Bsh1285I	CGRYCG	4 cut(s)	169, 181, 309, 406
BshFI	GGCC	7 cut(s)	74, 118, 168, 189, 308, 381, 1057
BshNI	GGYRCC	1 cut(s)	651
BsiEI	CGRYCG	4 cut(s)	169, 181, 309, 406
BsiHKAI	GWGCWC	1 cut(s)	1142
BsiSI	CCGG	7 cut(s)	151, 165, 169, 181, 186, 248, 309
BslFI	GGGAC	2 cut(s)	127, 627
BslI	CCNNNNNNNGG	4 cut(s)	150, 529, 638, 889
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	127, 627
BsnI	GGCC	7 cut(s)	74, 118, 168, 189, 308, 381, 1057
Bsp1286I	GDGCHC	2 cut(s)	151, 1142
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	4 cut(s)	403, 681, 876, 997
BspACI	CCGC	2 cut(s)	52, 285
BspANI	GGCC	7 cut(s)	74, 118, 168, 189, 308, 381, 1057
BspCNI	CTCAG	5 cut(s)	112, 139, 526, 877, 982
BspFNI	CGCG	1 cut(s)	1027
BspHI	TCATGA	1 cut(s)	1120
BspLI	GGNNCC	5 cut(s)	143, 642, 643, 653, 852
BspMAI	CTGCAG	1 cut(s)	1099
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	2 cut(s)	689, 1005
BspT107I	GGYRCC	1 cut(s)	651
BsrDI	GCAATG	2 cut(s)	391, 722
BsrFI	RCCGGY	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	346, 1058
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	104, 644
BssMI	GATC	4 cut(s)	403, 681, 876, 997
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	2 cut(s)	352, 603
Bst6I	CTCTTC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	480, 759
BstDEI	CTNAG	7 cut(s)	99, 126, 486, 534, 885, 948, 990
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	1027
BstHHI	GCGC	4 cut(s)	162, 371, 416, 1027
BstKTI	GATC	4 cut(s)	406, 684, 879, 1000
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	4 cut(s)	403, 681, 876, 997
BstMCI	CGRYCG	4 cut(s)	169, 181, 309, 406
BstMWI	GCNNNNNNNGC	4 cut(s)	235, 244, 539, 548
BstNI	CCWGG	1 cut(s)	646
BstSCI	CCNGG	3 cut(s)	149, 308, 644
BstSFI	CTRYAG	1 cut(s)	1095
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	1 cut(s)	1027
BstV1I	GCAGC	3 cut(s)	383, 494, 1109
BstV2I	GAAGAC	2 cut(s)	37, 788
BstZI	CGGCCG	2 cut(s)	166, 306
BsuI	GTATCC	1 cut(s)	561
BsuRI	GGCC	7 cut(s)	74, 118, 168, 189, 308, 381, 1057
BtrI	CACGTC	2 cut(s)	295, 451
BtsCI	GGATG	1 cut(s)	718
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	480, 759
CciI	TCATGA	1 cut(s)	1120
CfoI	GCGC	4 cut(s)	162, 371, 416, 1027
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	7 cut(s)	117, 141, 153, 183, 379, 590, 641
CpoI	CGGWCCG	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	508, 652, 817
CspI	CGGWCCG	1 cut(s)	183
CviAII	CATG	2 cut(s)	1001, 1121
CviQI	GTAC	3 cut(s)	508, 652, 817
DdeI	CTNAG	7 cut(s)	99, 126, 486, 534, 885, 948, 990
DpnI	GATC	4 cut(s)	405, 683, 878, 999
DpnII	GATC	4 cut(s)	403, 681, 876, 997
DrdI	GACNNNNNNGTC	1 cut(s)	790
DseDI	GACNNNNNNGTC	1 cut(s)	790
EaeI	YGGCCR	4 cut(s)	166, 187, 306, 1055
EagI	CGGCCG	2 cut(s)	166, 306
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EclXI	CGGCCG	2 cut(s)	166, 306
Eco147I	AGGCCT	1 cut(s)	74
Eco47I	GGWCC	5 cut(s)	141, 153, 183, 590, 641
Eco52I	CGGCCG	2 cut(s)	166, 306
Eco57I	CTGAAG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	644
FaeI	CATG	2 cut(s)	1004, 1124
FaiI	YATR	9 cut(s)	56, 79, 324, 326, 473, 584, 608, 1002, 1122
FaqI	GGGAC	2 cut(s)	127, 627
FatI	CATG	2 cut(s)	1000, 1120
Fnu4HI	GCNGC	3 cut(s)	372, 483, 1098
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	3 cut(s)	372, 483, 1098
GlaI	GCGC	4 cut(s)	161, 370, 415, 1026
GluI	GCNGC	3 cut(s)	372, 483, 1098
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	7 cut(s)	74, 118, 168, 189, 308, 381, 1057
HapII	CCGG	7 cut(s)	151, 165, 169, 181, 186, 248, 309
HhaI	GCGC	4 cut(s)	162, 371, 416, 1027
Hin1II	CATG	2 cut(s)	1004, 1124
Hin6I	GCGC	4 cut(s)	160, 369, 414, 1025
HinP1I	GCGC	4 cut(s)	160, 369, 414, 1025
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	2 cut(s)	536, 1033
HpaII	CCGG	7 cut(s)	151, 165, 169, 181, 186, 248, 309
HphI	GGTGA	2 cut(s)	621, 977
Hpy166II	GTNNAC	4 cut(s)	298, 508, 510, 699
Hpy188I	TCNGA	7 cut(s)	94, 108, 334, 408, 678, 991, 1007
Hpy188III	TCNNGA	2 cut(s)	771, 1121
Hpy8I	GTNNAC	4 cut(s)	298, 508, 510, 699
Hpy99I	CGWCG	2 cut(s)	338, 368
HpyAV	CCTTC	4 cut(s)	485, 642, 805, 883
HpyCH4III	ACNGT	2 cut(s)	352, 603
HpyCH4IV	ACGT	3 cut(s)	294, 450, 1162
HpyCH4V	TGCA	5 cut(s)	739, 761, 925, 1040, 1097
HpyF10VI	GCNNNNNNNGC	4 cut(s)	235, 244, 539, 548
HpyF3I	CTNAG	7 cut(s)	99, 126, 486, 534, 885, 948, 990
HpySE526I	ACGT	3 cut(s)	294, 450, 1162
Hsp92II	CATG	2 cut(s)	1004, 1124
HspAI	GCGC	4 cut(s)	160, 369, 414, 1025
KflI	GGGWCCC	1 cut(s)	641
KpnI	GGTACC	1 cut(s)	655
Kzo9I	GATC	4 cut(s)	403, 681, 876, 997
LmnI	GCTCC	4 cut(s)	167, 250, 494, 1012
Lsp1109I	GCAGC	3 cut(s)	383, 494, 1109
LweI	GCATC	1 cut(s)	1134
MaeII	ACGT	3 cut(s)	294, 450, 1162
MaeIII	GTNAC	6 cut(s)	278, 627, 804, 980, 1069, 1163
MalI	GATC	4 cut(s)	405, 683, 878, 999
MboI	GATC	4 cut(s)	403, 681, 876, 997
MboII	GAAGA	6 cut(s)	3, 37, 215, 793, 1100, 1141
MfeI	CAATTG	1 cut(s)	690
MhlI	GDGCHC	2 cut(s)	151, 1142
MlsI	TGGCCA	1 cut(s)	1057
MluCI	AATT	6 cut(s)	110, 173, 383, 558, 594, 690
MluNI	TGGCCA	1 cut(s)	1057
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	2 cut(s)	58, 357
Mox20I	TGGCCA	1 cut(s)	1057
MscI	TGGCCA	1 cut(s)	1057
MseI	TTAA	2 cut(s)	269, 909
MslI	CAYNNNNRTG	2 cut(s)	581, 621
Msp20I	TGGCCA	1 cut(s)	1057
MspA1I	CMGCKG	1 cut(s)	1100
MspI	CCGG	7 cut(s)	151, 165, 169, 181, 186, 248, 309
MspR9I	CCNGG	3 cut(s)	151, 310, 646
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	646
MvnI	CGCG	1 cut(s)	1027
MwoI	GCNNNNNNNGC	4 cut(s)	235, 244, 539, 548
NciI	CCSGG	2 cut(s)	151, 310
NdeII	GATC	4 cut(s)	403, 681, 876, 997
NlaIII	CATG	2 cut(s)	1004, 1124
NlaIV	GGNNCC	5 cut(s)	143, 642, 643, 653, 852
NmuCI	GTSAC	3 cut(s)	627, 804, 1069
PagI	TCATGA	1 cut(s)	1120
PceI	AGGCCT	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	1033
PkrI	GCNGC	3 cut(s)	373, 484, 1099
Ple19I	CGATCG	1 cut(s)	406
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PpuMI	RGGWCCY	1 cut(s)	641
PshBI	ATTAAT	1 cut(s)	909
PsiI	TTATAA	1 cut(s)	473
Psp1406I	AACGTT	1 cut(s)	1162
Psp5II	RGGWCCY	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	5 cut(s)	143, 642, 643, 653, 852
PspPI	GGNCC	7 cut(s)	117, 141, 153, 183, 379, 590, 641
PspPPI	RGGWCCY	1 cut(s)	641
PstI	CTGCAG	1 cut(s)	1099
PvuI	CGATCG	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	1100
RsaI	GTAC	3 cut(s)	509, 653, 818
RsaNI	GTAC	3 cut(s)	508, 652, 817
RseI	CAYNNNNRTG	2 cut(s)	581, 621
Rsr2I	CGGWCCG	1 cut(s)	183
RsrII	CGGWCCG	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	269, 909
SatI	GCNGC	3 cut(s)	372, 483, 1098
Sau3AI	GATC	4 cut(s)	403, 681, 876, 997
Sau96I	GGNCC	7 cut(s)	117, 141, 153, 183, 379, 590, 641
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	3 cut(s)	151, 310, 646
SduI	GDGCHC	2 cut(s)	151, 1142
SfaNI	GCATC	1 cut(s)	1134
SfcI	CTRYAG	1 cut(s)	1095
SinI	GGWCC	5 cut(s)	141, 153, 183, 590, 641
SmiMI	CAYNNNNRTG	2 cut(s)	581, 621
SmlI	CTYRAG	1 cut(s)	1016
SmoI	CTYRAG	1 cut(s)	1016
Sse9I	AATT	6 cut(s)	110, 173, 383, 558, 594, 690
SseBI	AGGCCT	1 cut(s)	74
SsiI	CCGC	2 cut(s)	52, 285
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	149, 308, 644
TaaI	ACNGT	2 cut(s)	352, 603
TaiI	ACGT	3 cut(s)	297, 453, 1165
TasI	AATT	6 cut(s)	110, 173, 383, 558, 594, 690
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	1 cut(s)	1033
Tru1I	TTAA	2 cut(s)	269, 909
Tru9I	TTAA	2 cut(s)	269, 909
TseFI	GTSAC	3 cut(s)	627, 804, 1069
TseI	GCWGC	3 cut(s)	371, 482, 1097
Tsp45I	GTSAC	3 cut(s)	627, 804, 1069
TspGWI	ACGGA	3 cut(s)	17, 351, 352
VpaK11BI	GGWCC	5 cut(s)	141, 153, 183, 590, 641
VspI	ATTAAT	1 cut(s)	909
XapI	RAATTY	3 cut(s)	110, 173, 558
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.