pyruvate, phosphate dikinase regulatory protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21210 AT4G21210 |
| fragaria_vesca | FvH4_3g02680 |
| malus_domestica | MD05G1340900.v1.1 |
| prunus_persica | Prupe.4G026400_v2.0.a1 |
| pyrus_communis | pycom05g31020 pycom10g26650 |
| rosa_chinensis | RchiOBHm_Chr5g0004011 |
| rosa_laevigata | RLG00000031196 |
| rosa_multiflora | Rmu_co8460589.1_g000001 Rmu_sc0000547.1_g000016 |
| rosa_roxburghii | Rroxscaffold_1G00071960 |
| rosa_rugosa | Rorug04G0409000 |
| rosa_samantha | Rh5AG036700 Rh5BG035800 Rh5CG039400 Rh5DG035200 |
| rosa_wichuraiana | Rw5G003330 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 509 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 172 |
| Acc16I | TGCGCA | 1 cut(s) | 858 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 238 |
| AccI | GTMKAC | 2 cut(s) | 263, 438 |
| AccII | CGCG | 4 cut(s) | 44, 46, 216, 273 |
| AciI | CCGC | 7 cut(s) | 42, 96, 214, 254, 271, 569, 908 |
| AclWI | GGATC | 3 cut(s) | 236, 249, 278 |
| AcoI | YGGCCR | 1 cut(s) | 1106 |
| AfaI | GTAC | 4 cut(s) | 192, 298, 545, 722 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 183, 238, 565, 685, 696, 925, 940 |
| AgsI | TTSAA | 2 cut(s) | 737, 1118 |
| AjnI | CCWGG | 2 cut(s) | 118, 691 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 930, 962 |
| AluBI | AGCT | 7 cut(s) | 24, 163, 554, 702, 998, 1066, 1151 |
| AluI | AGCT | 7 cut(s) | 24, 163, 554, 702, 998, 1066, 1151 |
| Alw21I | GWGCWC | 3 cut(s) | 396, 535, 1193 |
| Alw26I | GTCTC | 1 cut(s) | 1156 |
| AlwI | GGATC | 3 cut(s) | 236, 249, 278 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1066 |
| Ama87I | CYCGRG | 1 cut(s) | 177 |
| AoxI | GGCC | 7 cut(s) | 625, 639, 673, 687, 694, 915, 1106 |
| ApaI | GGGCCC | 2 cut(s) | 629, 691 |
| ApeKI | GCWGC | 6 cut(s) | 153, 256, 407, 447, 518, 1148 |
| AspLEI | GCGC | 6 cut(s) | 46, 48, 218, 452, 859, 1185 |
| AspS9I | GGNCC | 9 cut(s) | 174, 186, 211, 228, 625, 626, 687, 688, 916 |
| AsuC2I | CCSGG | 6 cut(s) | 139, 178, 179, 443, 475, 935 |
| AsuHPI | GGTGA | 1 cut(s) | 703 |
| AvaI | CYCGRG | 1 cut(s) | 177 |
| AvaII | GGWCC | 4 cut(s) | 174, 186, 211, 228 |
| BaeGI | GKGCMC | 3 cut(s) | 184, 629, 691 |
| BalI | TGGCCA | 1 cut(s) | 1108 |
| BamHI | GGATCC | 1 cut(s) | 241 |
| BanII | GRGCYC | 2 cut(s) | 629, 691 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 341, 373 |
| BauI | CACGAG | 1 cut(s) | 681 |
| BbsI | GAAGAC | 1 cut(s) | 839 |
| Bbv12I | GWGCWC | 3 cut(s) | 396, 535, 1193 |
| BbvCI | CCTCAGC | 1 cut(s) | 159 |
| BbvI | GCAGC | 6 cut(s) | 165, 243, 394, 434, 530, 1160 |
| BccI | CCATC | 8 cut(s) | 98, 165, 320, 493, 761, 761, 889, 1039 |
| BceAI | ACGGC | 2 cut(s) | 357, 437 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 333, 367 |
| BciT130I | CCWGG | 2 cut(s) | 120, 693 |
| BciVI | GTATCC | 1 cut(s) | 121 |
| BcnI | CCSGG | 6 cut(s) | 139, 178, 179, 443, 475, 935 |
| BcoDI | GTCTC | 1 cut(s) | 1156 |
| BfaI | CTAG | 2 cut(s) | 968, 1219 |
| BfmI | CTRYAG | 2 cut(s) | 257, 1146 |
| BfuI | GTATCC | 1 cut(s) | 121 |
| BisI | GCNGC | 8 cut(s) | 96, 154, 257, 408, 448, 519, 908, 1149 |
| BlsI | GCNGC | 8 cut(s) | 97, 155, 258, 409, 449, 520, 909, 1150 |
| BmcAI | AGTACT | 2 cut(s) | 298, 722 |
| Bme1390I | CCNGG | 8 cut(s) | 120, 139, 178, 179, 443, 475, 693, 935 |
| Bme18I | GGWCC | 4 cut(s) | 174, 186, 211, 228 |
| BmeT110I | CYCGRG | 1 cut(s) | 177 |
| BmgT120I | GGNCC | 9 cut(s) | 174, 186, 211, 228, 625, 626, 687, 688, 916 |
| BmiI | GGNNCC | 8 cut(s) | 129, 176, 230, 243, 627, 688, 689, 690 |
| BmrFI | CCNGG | 8 cut(s) | 120, 139, 178, 179, 443, 475, 693, 935 |
| BmrI | ACTGGG | 3 cut(s) | 387, 607, 837 |
| BmsI | GCATC | 1 cut(s) | 311 |
| BmuI | ACTGGG | 3 cut(s) | 387, 607, 837 |
| BpiI | GAAGAC | 1 cut(s) | 839 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 691, 723 |
| BpmI | CTGGAG | 1 cut(s) | 1088 |
| Bpu10I | CCTNAGC | 1 cut(s) | 159 |
| BpuEI | CTTGAG | 2 cut(s) | 40, 65 |
| BpuMI | CCSGG | 6 cut(s) | 139, 178, 179, 443, 475, 935 |
| Bsa29I | ATCGAT | 1 cut(s) | 845 |
| BsaJI | CCNNGG | 3 cut(s) | 177, 442, 691 |
| BsaWI | WCCGGW | 1 cut(s) | 197 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1055, 1085 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 183, 238, 565, 685, 696, 925, 940 |
| Bse1I | ACTGG | 6 cut(s) | 54, 74, 382, 602, 832, 1109 |
| Bse3DI | GCAATG | 3 cut(s) | 427, 642, 773 |
| BseBI | CCWGG | 2 cut(s) | 120, 693 |
| BseCI | ATCGAT | 1 cut(s) | 845 |
| BseDI | CCNNGG | 3 cut(s) | 177, 442, 691 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 183, 238, 565, 685, 696, 925, 940 |
| BseMI | GCAATG | 3 cut(s) | 427, 642, 773 |
| BseMII | CTCAG | 1 cut(s) | 173 |
| BseNI | ACTGG | 6 cut(s) | 54, 74, 382, 602, 832, 1109 |
| BsePI | GCGCGC | 1 cut(s) | 44 |
| BseRI | GAGGAG | 2 cut(s) | 91, 94 |
| BseSI | GKGCMC | 3 cut(s) | 184, 629, 691 |
| BseXI | GCAGC | 6 cut(s) | 165, 243, 394, 434, 530, 1160 |
| BseYI | CCCAGC | 1 cut(s) | 69 |
| Bsh1236I | CGCG | 4 cut(s) | 44, 46, 216, 273 |
| Bsh1285I | CGRYCG | 4 cut(s) | 202, 271, 442, 1177 |
| BshFI | GGCC | 7 cut(s) | 627, 641, 675, 689, 696, 917, 1108 |
| BshVI | ATCGAT | 1 cut(s) | 845 |
| BsiEI | CGRYCG | 4 cut(s) | 202, 271, 442, 1177 |
| BsiHKAI | GWGCWC | 3 cut(s) | 396, 535, 1193 |
| BsiHKCI | CYCGRG | 1 cut(s) | 177 |
| BsiSI | CCGG | 8 cut(s) | 139, 178, 198, 442, 474, 672, 697, 935 |
| BsiWI | CGTACG | 1 cut(s) | 190 |
| BslFI | GGGAC | 1 cut(s) | 160 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 183, 238, 565, 685, 696, 925, 940 |
| BsmAI | GTCTC | 1 cut(s) | 1156 |
| BsmFI | GGGAC | 1 cut(s) | 160 |
| BsmI | GAATGC | 1 cut(s) | 10 |
| BsnI | GGCC | 7 cut(s) | 627, 641, 675, 689, 696, 917, 1108 |
| BsoBI | CYCGRG | 1 cut(s) | 177 |
| Bsp120I | GGGCCC | 2 cut(s) | 625, 687 |
| Bsp1286I | GDGCHC | 6 cut(s) | 184, 396, 535, 629, 691, 1193 |
| Bsp1407I | TGTACA | 1 cut(s) | 543 |
| Bsp143I | GATC | 2 cut(s) | 241, 283 |
| BspACI | CCGC | 7 cut(s) | 42, 96, 214, 254, 271, 569, 908 |
| BspANI | GGCC | 7 cut(s) | 627, 641, 675, 689, 696, 917, 1108 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspDI | ATCGAT | 1 cut(s) | 845 |
| BspFNI | CGCG | 4 cut(s) | 44, 46, 216, 273 |
| BspLI | GGNNCC | 8 cut(s) | 129, 176, 230, 243, 627, 688, 689, 690 |
| BspMAI | CTGCAG | 2 cut(s) | 261, 1150 |
| BspPI | GGATC | 3 cut(s) | 236, 249, 278 |
| BsrDI | GCAATG | 3 cut(s) | 427, 642, 773 |
| BsrGI | TGTACA | 1 cut(s) | 543 |
| BsrI | ACTGG | 6 cut(s) | 54, 74, 382, 602, 832, 1109 |
| BssECI | CCNNGG | 3 cut(s) | 177, 442, 691 |
| BssHII | GCGCGC | 1 cut(s) | 44 |
| BssMI | GATC | 2 cut(s) | 241, 283 |
| BssSI | CACGAG | 1 cut(s) | 681 |
| Bst2BI | CACGAG | 1 cut(s) | 681 |
| Bst2UI | CCWGG | 2 cut(s) | 120, 693 |
| Bst4CI | ACNGT | 2 cut(s) | 186, 388 |
| BstAUI | TGTACA | 1 cut(s) | 543 |
| BstC8I | GCNNGC | 3 cut(s) | 46, 516, 585 |
| BstDEI | CTNAG | 2 cut(s) | 159, 999 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 923 |
| BstFNI | CGCG | 4 cut(s) | 44, 46, 216, 273 |
| BstHHI | GCGC | 6 cut(s) | 46, 48, 218, 452, 859, 1185 |
| BstKTI | GATC | 2 cut(s) | 244, 286 |
| BstMAI | GTCTC | 1 cut(s) | 1156 |
| BstMBI | GATC | 2 cut(s) | 241, 283 |
| BstMCI | CGRYCG | 4 cut(s) | 202, 271, 442, 1177 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 327, 424, 575, 584 |
| BstNI | CCWGG | 2 cut(s) | 120, 693 |
| BstNSI | RCATGY | 2 cut(s) | 137, 591 |
| BstSCI | CCNGG | 8 cut(s) | 118, 137, 176, 177, 441, 473, 691, 933 |
| BstSFI | CTRYAG | 2 cut(s) | 257, 1146 |
| BstSLI | GKGCMC | 3 cut(s) | 184, 629, 691 |
| BstUI | CGCG | 4 cut(s) | 44, 46, 216, 273 |
| BstV1I | GCAGC | 6 cut(s) | 165, 243, 394, 434, 530, 1160 |
| BstV2I | GAAGAC | 1 cut(s) | 839 |
| BstX2I | RGATCY | 2 cut(s) | 241, 283 |
| BstYI | RGATCY | 2 cut(s) | 241, 283 |
| Bsu15I | ATCGAT | 1 cut(s) | 845 |
| BsuI | GTATCC | 1 cut(s) | 121 |
| BsuRI | GGCC | 7 cut(s) | 627, 641, 675, 689, 696, 917, 1108 |
| BsuTUI | ATCGAT | 1 cut(s) | 845 |
| BtgZI | GCGATG | 1 cut(s) | 76 |
| BtsIMutI | CAGTG | 2 cut(s) | 595, 1021 |
| Cac8I | GCNNGC | 3 cut(s) | 46, 516, 585 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1066 |
| CfoI | GCGC | 6 cut(s) | 46, 48, 218, 452, 859, 1185 |
| Cfr13I | GGNCC | 9 cut(s) | 174, 186, 211, 228, 625, 626, 687, 688, 916 |
| Cfr9I | CCCGGG | 1 cut(s) | 177 |
| ClaI | ATCGAT | 1 cut(s) | 845 |
| CpoI | CGGWCCG | 1 cut(s) | 186 |
| CsiI | ACCWGGT | 1 cut(s) | 118 |
| Csp6I | GTAC | 4 cut(s) | 191, 297, 544, 721 |
| CspI | CGGWCCG | 1 cut(s) | 186 |
| CviAII | CATG | 6 cut(s) | 59, 134, 331, 361, 588, 1052 |
| CviQI | GTAC | 4 cut(s) | 191, 297, 544, 721 |
| DdeI | CTNAG | 2 cut(s) | 159, 999 |
| DpnI | GATC | 2 cut(s) | 243, 285 |
| DpnII | GATC | 2 cut(s) | 241, 283 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 172 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 172 |
| EaeI | YGGCCR | 1 cut(s) | 1106 |
| EciI | GGCGGA | 1 cut(s) | 584 |
| Eco24I | GRGCYC | 2 cut(s) | 629, 691 |
| Eco47I | GGWCC | 4 cut(s) | 174, 186, 211, 228 |
| Eco88I | CYCGRG | 1 cut(s) | 177 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 923 |
| EcoO109I | RGGNCCY | 4 cut(s) | 228, 687, 688, 916 |
| EcoRII | CCWGG | 2 cut(s) | 118, 691 |
| EcoT38I | GRGCYC | 2 cut(s) | 629, 691 |
| FaeI | CATG | 6 cut(s) | 62, 137, 334, 364, 591, 1055 |
| FaqI | GGGAC | 1 cut(s) | 160 |
| FatI | CATG | 6 cut(s) | 58, 133, 330, 360, 587, 1051 |
| FauI | CCCGC | 1 cut(s) | 49 |
| FblI | GTMKAC | 2 cut(s) | 263, 438 |
| Fnu4HI | GCNGC | 8 cut(s) | 96, 154, 257, 408, 448, 519, 908, 1149 |
| FriOI | GRGCYC | 2 cut(s) | 629, 691 |
| Fsp4HI | GCNGC | 8 cut(s) | 96, 154, 257, 408, 448, 519, 908, 1149 |
| FspBI | CTAG | 2 cut(s) | 968, 1219 |
| FspI | TGCGCA | 1 cut(s) | 858 |
| GlaI | GCGC | 6 cut(s) | 45, 47, 217, 451, 858, 1184 |
| GluI | GCNGC | 8 cut(s) | 96, 154, 257, 408, 448, 519, 908, 1149 |
| GsaI | CCCAGC | 1 cut(s) | 73 |
| GsuI | CTGGAG | 1 cut(s) | 1088 |
| HaeIII | GGCC | 7 cut(s) | 627, 641, 675, 689, 696, 917, 1108 |
| HapII | CCGG | 8 cut(s) | 139, 178, 198, 442, 474, 672, 697, 935 |
| HhaI | GCGC | 6 cut(s) | 46, 48, 218, 452, 859, 1185 |
| Hin1II | CATG | 6 cut(s) | 62, 137, 334, 364, 591, 1055 |
| Hin6I | GCGC | 6 cut(s) | 44, 46, 216, 450, 857, 1183 |
| HinP1I | GCGC | 6 cut(s) | 44, 46, 216, 450, 857, 1183 |
| HincII | GTYRAC | 3 cut(s) | 403, 439, 931 |
| HindII | GTYRAC | 3 cut(s) | 403, 439, 931 |
| HinfI | GANTC | 5 cut(s) | 166, 572, 1003, 1084, 1096 |
| HpaII | CCGG | 8 cut(s) | 139, 178, 198, 442, 474, 672, 697, 935 |
| HphI | GGTGA | 1 cut(s) | 703 |
| Hpy166II | GTNNAC | 8 cut(s) | 264, 384, 403, 439, 544, 546, 750, 931 |
| Hpy188I | TCNGA | 8 cut(s) | 115, 127, 204, 225, 246, 370, 954, 1042 |
| Hpy188III | TCNNGA | 5 cut(s) | 28, 287, 306, 822, 1172 |
| Hpy8I | GTNNAC | 8 cut(s) | 264, 384, 403, 439, 544, 546, 750, 931 |
| Hpy99I | CGWCG | 1 cut(s) | 326 |
| HpyAV | CCTTC | 3 cut(s) | 521, 1013, 1021 |
| HpyCH4III | ACNGT | 2 cut(s) | 186, 388 |
| HpyCH4V | TGCA | 9 cut(s) | 62, 259, 302, 729, 790, 878, 976, 1091, 1148 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 327, 424, 575, 584 |
| HpyF3I | CTNAG | 2 cut(s) | 159, 999 |
| Hsp92II | CATG | 6 cut(s) | 62, 137, 334, 364, 591, 1055 |
| HspAI | GCGC | 6 cut(s) | 44, 46, 216, 450, 857, 1183 |
| Kzo9I | GATC | 2 cut(s) | 241, 283 |
| LmnI | GCTCC | 5 cut(s) | 43, 200, 391, 699, 1063 |
| Lsp1109I | GCAGC | 6 cut(s) | 165, 243, 394, 434, 530, 1160 |
| LweI | GCATC | 1 cut(s) | 311 |
| MabI | ACCWGGT | 1 cut(s) | 118 |
| MaeI | CTAG | 2 cut(s) | 968, 1219 |
| MaeIII | GTNAC | 4 cut(s) | 311, 866, 1031, 1120 |
| MalI | GATC | 2 cut(s) | 243, 285 |
| MboI | GATC | 2 cut(s) | 241, 283 |
| MboII | GAAGA | 3 cut(s) | 3, 844, 1151 |
| MfeI | CAATTG | 1 cut(s) | 233 |
| MflI | RGATCY | 2 cut(s) | 241, 283 |
| MhlI | GDGCHC | 6 cut(s) | 184, 396, 535, 629, 691, 1193 |
| MlsI | TGGCCA | 1 cut(s) | 1108 |
| MluCI | AATT | 5 cut(s) | 206, 233, 630, 981, 1113 |
| MluNI | TGGCCA | 1 cut(s) | 1108 |
| MlyI | GAGTC | 3 cut(s) | 160, 581, 997 |
| MmeI | TCCRAC | 1 cut(s) | 182 |
| Mox20I | TGGCCA | 1 cut(s) | 1108 |
| MscI | TGGCCA | 1 cut(s) | 1108 |
| MslI | CAYNNNNRTG | 2 cut(s) | 335, 657 |
| Msp20I | TGGCCA | 1 cut(s) | 1108 |
| MspA1I | CMGCKG | 3 cut(s) | 163, 256, 1151 |
| MspI | CCGG | 8 cut(s) | 139, 178, 198, 442, 474, 672, 697, 935 |
| MspR9I | CCNGG | 8 cut(s) | 120, 139, 178, 179, 443, 475, 693, 935 |
| MunI | CAATTG | 1 cut(s) | 233 |
| Mva1269I | GAATGC | 1 cut(s) | 10 |
| MvaI | CCWGG | 2 cut(s) | 120, 693 |
| MvnI | CGCG | 4 cut(s) | 44, 46, 216, 273 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 327, 424, 575, 584 |
| NciI | CCSGG | 6 cut(s) | 139, 178, 179, 443, 475, 935 |
| NdeII | GATC | 2 cut(s) | 241, 283 |
| NlaIII | CATG | 6 cut(s) | 62, 137, 334, 364, 591, 1055 |
| NlaIV | GGNNCC | 8 cut(s) | 129, 176, 230, 243, 627, 688, 689, 690 |
| NmeAIII | GCCGAG | 1 cut(s) | 559 |
| NmuCI | GTSAC | 1 cut(s) | 311 |
| NsbI | TGCGCA | 1 cut(s) | 858 |
| NspI | RCATGY | 2 cut(s) | 137, 591 |
| PauI | GCGCGC | 1 cut(s) | 44 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 321 |
| PctI | GAATGC | 1 cut(s) | 10 |
| PfeI | GAWTC | 2 cut(s) | 1084, 1096 |
| Pfl23II | CGTACG | 1 cut(s) | 190 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 238 |
| PfoI | TCCNGGA | 1 cut(s) | 473 |
| PkrI | GCNGC | 8 cut(s) | 97, 155, 258, 409, 449, 520, 909, 1150 |
| PleI | GAGTC | 3 cut(s) | 160, 580, 997 |
| PpsI | GAGTC | 3 cut(s) | 160, 580, 997 |
| PpuMI | RGGWCCY | 1 cut(s) | 228 |
| PsiI | TTATAA | 1 cut(s) | 509 |
| Psp5II | RGGWCCY | 1 cut(s) | 228 |
| Psp6I | CCWGG | 2 cut(s) | 118, 691 |
| PspFI | CCCAGC | 1 cut(s) | 69 |
| PspGI | CCWGG | 2 cut(s) | 118, 691 |
| PspLI | CGTACG | 1 cut(s) | 190 |
| PspN4I | GGNNCC | 8 cut(s) | 129, 176, 230, 243, 627, 688, 689, 690 |
| PspOMI | GGGCCC | 2 cut(s) | 625, 687 |
| PspPI | GGNCC | 9 cut(s) | 174, 186, 211, 228, 625, 626, 687, 688, 916 |
| PspPPI | RGGWCCY | 1 cut(s) | 228 |
| PstI | CTGCAG | 2 cut(s) | 261, 1150 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1066 |
| PsuI | RGATCY | 2 cut(s) | 241, 283 |
| PteI | GCGCGC | 1 cut(s) | 44 |
| PvuII | CAGCTG | 2 cut(s) | 163, 1151 |
| RsaI | GTAC | 4 cut(s) | 192, 298, 545, 722 |
| RsaNI | GTAC | 4 cut(s) | 191, 297, 544, 721 |
| RseI | CAYNNNNRTG | 2 cut(s) | 335, 657 |
| Rsr2I | CGGWCCG | 1 cut(s) | 186 |
| RsrII | CGGWCCG | 1 cut(s) | 186 |
| SalI | GTCGAC | 1 cut(s) | 437 |
| SatI | GCNGC | 8 cut(s) | 96, 154, 257, 408, 448, 519, 908, 1149 |
| Sau3AI | GATC | 2 cut(s) | 241, 283 |
| Sau96I | GGNCC | 9 cut(s) | 174, 186, 211, 228, 625, 626, 687, 688, 916 |
| ScaI | AGTACT | 2 cut(s) | 298, 722 |
| SchI | GAGTC | 3 cut(s) | 160, 581, 997 |
| ScrFI | CCNGG | 8 cut(s) | 120, 139, 178, 179, 443, 475, 693, 935 |
| SduI | GDGCHC | 6 cut(s) | 184, 396, 535, 629, 691, 1193 |
| SexAI | ACCWGGT | 1 cut(s) | 118 |
| SfaNI | GCATC | 1 cut(s) | 311 |
| SfcI | CTRYAG | 2 cut(s) | 257, 1146 |
| SinI | GGWCC | 4 cut(s) | 174, 186, 211, 228 |
| SmaI | CCCGGG | 1 cut(s) | 179 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 335, 657 |
| SmlI | CTYRAG | 2 cut(s) | 19, 80 |
| SmoI | CTYRAG | 2 cut(s) | 19, 80 |
| Sse9I | AATT | 5 cut(s) | 206, 233, 630, 981, 1113 |
| SsiI | CCGC | 7 cut(s) | 42, 96, 214, 254, 271, 569, 908 |
| SspMI | CTAG | 2 cut(s) | 968, 1219 |
| StyD4I | CCNGG | 8 cut(s) | 118, 137, 176, 177, 441, 473, 691, 933 |
| TaaI | ACNGT | 2 cut(s) | 186, 388 |
| TaqI | TCGA | 7 cut(s) | 169, 353, 423, 438, 845, 1078, 1208 |
| TaqII | GACCGA | 1 cut(s) | 1191 |
| TasI | AATT | 5 cut(s) | 206, 233, 630, 981, 1113 |
| TatI | WGTACW | 3 cut(s) | 296, 543, 720 |
| TauI | GCSGC | 2 cut(s) | 98, 910 |
| TfiI | GAWTC | 2 cut(s) | 1084, 1096 |
| TscAI | CASTG | 2 cut(s) | 602, 1021 |
| TseFI | GTSAC | 1 cut(s) | 311 |
| TseI | GCWGC | 6 cut(s) | 153, 256, 407, 447, 518, 1148 |
| Tsp45I | GTSAC | 1 cut(s) | 311 |
| TspDTI | ATGAA | 3 cut(s) | 17, 1040, 1040 |
| TspGWI | ACGGA | 4 cut(s) | 97, 178, 387, 388 |
| TspMI | CCCGGG | 1 cut(s) | 177 |
| TspRI | CASTG | 2 cut(s) | 602, 1021 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 238 |
| VpaK11BI | GGWCC | 4 cut(s) | 174, 186, 211, 228 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 923 |
| XceI | RCATGY | 2 cut(s) | 137, 591 |
| XmaI | CCCGGG | 1 cut(s) | 177 |
| XmiI | GTMKAC | 2 cut(s) | 263, 438 |
| XspI | CTAG | 2 cut(s) | 968, 1219 |
| ZrmI | AGTACT | 2 cut(s) | 298, 722 |