Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8460589.1

Orthogroup ID

OG0013019

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1282

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8460589.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

cctcagctaagccgatggtcccgggcccggtccttgcgctccggtcggaaattcgaccggaccggccagcagacccaactactcgacccaaaccctcctccgcagctcaaagaacgagtcttgccggagcaaaaagacacttctttaacggcgagtgacggcgacgatgacgtggtcatgacgaccgggaagtcgatttatatggtttccgacggatctgggtggacggtggaacactccgtcggcgcagcgttgggccagtttgagcattgcttggtcgatcggaactgcgctgtgaatacccatttgttttctggggttgatgatgtggggcagttaatggagattataaagcaagcagctaaagaaggagctatggtggtgtacacattagctgacccatcaatggctgagtctgctaaacaagcttgtaaaatttggggcttacccagcattgatatgttaggtccaattacacagtcaatagcttcacatctaaatgtgtcaccttctgggggtcctaggagataccctcttacagatgagtactttcagaggattgaagcgattgagtttacgatcaagcaagatgatggggcattgccccagaacttgcacaaggccgacattgtgcttgccggagtttcgagaacggggaagaccccgttgtcgatttatctctcacagaaggggtacaaggtggctaatgtgcctattgtgatgggggttcctttgccaaagactctttttgagattgaccccgagaaagtttttggcttgactattaatcctctggtgttgcaaacgattaggagggcgagagctaagagtttggggttcagtgaaggagtgaggagtaactactctgagatggatcatgttcgagaggagcttgagtatgcgcgaaagattcttgcacaaaatcctgtctggccagtaattgaagtgacaggaaaagcaatagaagaaactgcagctgttgtattgaggctttatcatgacaggaagaacaagtgctcaatgccaagaatatcaaaacgttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinase-PPPase

Protein Analysis

348

Amino Acids

38.56

Weight (kDa)

8.61

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21210 AT4G21210
fragaria_vesca	FvH4_3g02680
malus_domestica	MD05G1340900.v1.1
prunus_persica	Prupe.4G026400_v2.0.a1
pyrus_communis	pycom05g31020 pycom10g26650
rosa_chinensis	RchiOBHm_Chr5g0004011
rosa_laevigata	RLG00000031196
rosa_multiflora	Rmu_co8460589.1_g000001 Rmu_sc0000547.1_g000016
rosa_roxburghii	Rroxscaffold_1G00071960
rosa_rugosa	Rorug04G0409000
rosa_samantha	Rh5AG036700 Rh5BG035800 Rh5CG039400 Rh5DG035200
rosa_wichuraiana	Rw5G003330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	350
AasI	GACNNNNNNGTC	2 cut(s)	190, 667
AccII	CGCG	1 cut(s)	904
AciI	CCGC	1 cut(s)	101
AclI	AACGTT	1 cut(s)	1039
AclWI	GGATC	2 cut(s)	223, 882
AcoI	YGGCCR	2 cut(s)	64, 932
AcsI	RAATTY	2 cut(s)	50, 435
AfaI	GTAC	3 cut(s)	386, 548, 695
AfiI	CCNNNNNNNGG	3 cut(s)	27, 406, 515
AgsI	TTSAA	2 cut(s)	563, 944
AjiI	CACGTC	1 cut(s)	172
Alw21I	GWGCWC	1 cut(s)	1019
AlwI	GGATC	2 cut(s)	223, 882
Ama87I	CYCGRG	2 cut(s)	21, 761
AoxI	GGCC	5 cut(s)	24, 64, 256, 621, 932
ApaI	GGGCCC	1 cut(s)	28
ApeKI	GCWGC	4 cut(s)	103, 248, 359, 974
ApoI	RAATTY	2 cut(s)	50, 435
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AseI	ATTAAT	1 cut(s)	786
AspA2I	CCTAGG	1 cut(s)	521
AspLEI	GCGC	4 cut(s)	39, 248, 293, 904
AspS9I	GGNCC	8 cut(s)	18, 24, 25, 30, 60, 256, 467, 518
AsuC2I	CCSGG	4 cut(s)	22, 23, 28, 187
AsuHPI	GGTGA	1 cut(s)	498
AvaI	CYCGRG	2 cut(s)	21, 761
AvaII	GGWCC	5 cut(s)	18, 30, 60, 467, 518
AvrII	CCTAGG	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	28
BalI	TGGCCA	1 cut(s)	934
BanII	GRGCYC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	665
Bbv12I	GWGCWC	1 cut(s)	1019
BbvCI	CCTCAGC	1 cut(s)	3
BbvI	GCAGC	4 cut(s)	115, 260, 371, 986
BccI	CCATC	5 cut(s)	9, 409, 587, 715, 865
BceAI	ACGGC	2 cut(s)	165, 175
BcnI	CCSGG	4 cut(s)	22, 23, 28, 187
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	972
BisI	GCNGC	4 cut(s)	104, 249, 360, 975
BlnI	CCTAGG	1 cut(s)	521
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	4 cut(s)	105, 250, 361, 976
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	4 cut(s)	22, 23, 28, 187
Bme18I	GGWCC	5 cut(s)	18, 30, 60, 467, 518
BmeT110I	CYCGRG	2 cut(s)	21, 761
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	8 cut(s)	18, 24, 25, 30, 60, 256, 467, 518
BmiI	GGNNCC	4 cut(s)	20, 26, 519, 729
BmrFI	CCNGG	4 cut(s)	22, 23, 28, 187
BpiI	GAAGAC	1 cut(s)	665
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
Bpu10I	CCTNAGC	1 cut(s)	3
Bpu1102I	GCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	914
BpuMI	CCSGG	4 cut(s)	22, 23, 28, 187
BsaJI	CCNNGG	2 cut(s)	21, 521
BsaWI	WCCGGW	2 cut(s)	41, 57
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 881, 911
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 406, 515
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	259, 935
Bse3DI	GCAATG	2 cut(s)	268, 599
BseDI	CCNNGG	2 cut(s)	21, 521
BseLI	CCNNNNNNNGG	3 cut(s)	27, 406, 515
BseMI	GCAATG	2 cut(s)	268, 599
BseMII	CTCAG	3 cut(s)	17, 402, 858
BseNI	ACTGG	2 cut(s)	259, 935
BseRI	GAGGAG	3 cut(s)	87, 868, 902
BseSI	GKGCMC	1 cut(s)	28
BseXI	GCAGC	4 cut(s)	115, 260, 371, 986
BseYI	CCCAGC	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	904
Bsh1285I	CGRYCG	4 cut(s)	46, 58, 186, 283
BshFI	GGCC	5 cut(s)	26, 66, 258, 623, 934
BsiEI	CGRYCG	4 cut(s)	46, 58, 186, 283
BsiHKAI	GWGCWC	1 cut(s)	1019
BsiHKCI	CYCGRG	2 cut(s)	21, 761
BsiSI	CCGG	8 cut(s)	22, 28, 42, 58, 63, 125, 186, 639
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	3 cut(s)	27, 406, 515
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	5 cut(s)	26, 66, 258, 623, 934
BsoBI	CYCGRG	2 cut(s)	21, 761
Bsp120I	GGGCCC	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	28, 1019
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	215, 280, 579, 874
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	5 cut(s)	26, 66, 258, 623, 934
BspCNI	CTCAG	3 cut(s)	16, 403, 859
BspFNI	CGCG	1 cut(s)	904
BspHI	TCATGA	2 cut(s)	177, 997
BspLI	GGNNCC	4 cut(s)	20, 26, 519, 729
BspMAI	CTGCAG	1 cut(s)	976
BspPI	GGATC	2 cut(s)	223, 882
BsrDI	GCAATG	2 cut(s)	268, 599
BsrFI	RCCGGY	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	259, 935
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	21, 521
BssMI	GATC	4 cut(s)	215, 280, 579, 874
BssT1I	CCWWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	229, 480
BstAUI	TGTACA	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	68, 357, 636
BstDEI	CTNAG	5 cut(s)	3, 8, 411, 825, 867
BstFNI	CGCG	1 cut(s)	904
BstHHI	GCGC	4 cut(s)	39, 248, 293, 904
BstKTI	GATC	4 cut(s)	218, 283, 582, 877
BstMBI	GATC	4 cut(s)	215, 280, 579, 874
BstMCI	CGRYCG	4 cut(s)	46, 58, 186, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 425, 450
BstSCI	CCNGG	4 cut(s)	20, 21, 26, 185
BstSFI	CTRYAG	1 cut(s)	972
BstSLI	GKGCMC	1 cut(s)	28
BstUI	CGCG	1 cut(s)	904
BstV1I	GCAGC	4 cut(s)	115, 260, 371, 986
BstV2I	GAAGAC	1 cut(s)	665
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	5 cut(s)	26, 66, 258, 623, 934
BtrI	CACGTC	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	847
Cac8I	GCNNGC	3 cut(s)	68, 357, 636
CciI	TCATGA	2 cut(s)	177, 997
CfoI	GCGC	4 cut(s)	39, 248, 293, 904
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	8 cut(s)	18, 24, 25, 30, 60, 256, 467, 518
Cfr9I	CCCGGG	1 cut(s)	21
CpoI	CGGWCCG	1 cut(s)	60
Csp6I	GTAC	3 cut(s)	385, 547, 694
CspI	CGGWCCG	1 cut(s)	60
CviAII	CATG	3 cut(s)	178, 878, 998
CviQI	GTAC	3 cut(s)	385, 547, 694
DdeI	CTNAG	5 cut(s)	3, 8, 411, 825, 867
DpnI	GATC	4 cut(s)	217, 282, 581, 876
DpnII	GATC	4 cut(s)	215, 280, 579, 874
DrdI	GACNNNNNNGTC	2 cut(s)	190, 667
DseDI	GACNNNNNNGTC	2 cut(s)	190, 667
EaeI	YGGCCR	2 cut(s)	64, 932
Eco130I	CCWWGG	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	5 cut(s)	18, 30, 60, 467, 518
Eco88I	CYCGRG	2 cut(s)	21, 761
EcoO109I	RGGNCCY	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	3 cut(s)	181, 881, 1001
FaiI	YATR	9 cut(s)	179, 201, 203, 350, 377, 461, 879, 900, 999
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	3 cut(s)	177, 877, 997
Fnu4HI	GCNGC	4 cut(s)	104, 249, 360, 975
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	4 cut(s)	104, 249, 360, 975
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	4 cut(s)	38, 247, 292, 903
GluI	GCNGC	4 cut(s)	104, 249, 360, 975
GsaI	CCCAGC	1 cut(s)	453
HaeIII	GGCC	5 cut(s)	26, 66, 258, 623, 934
HapII	CCGG	8 cut(s)	22, 28, 42, 58, 63, 125, 186, 639
HhaI	GCGC	4 cut(s)	39, 248, 293, 904
Hin1II	CATG	3 cut(s)	181, 881, 1001
Hin6I	GCGC	4 cut(s)	37, 246, 291, 902
HinP1I	GCGC	4 cut(s)	37, 246, 291, 902
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	4 cut(s)	117, 413, 742, 910
HpaII	CCGG	8 cut(s)	22, 28, 42, 58, 63, 125, 186, 639
HphI	GGTGA	1 cut(s)	498
Hpy166II	GTNNAC	4 cut(s)	225, 385, 387, 576
Hpy188I	TCNGA	5 cut(s)	48, 211, 285, 555, 868
Hpy188III	TCNNGA	4 cut(s)	178, 648, 884, 998
Hpy8I	GTNNAC	4 cut(s)	225, 385, 387, 576
Hpy99I	CGWCG	3 cut(s)	167, 215, 245
HpyAV	CCTTC	4 cut(s)	362, 519, 682, 839
HpyCH4III	ACNGT	2 cut(s)	229, 480
HpyCH4IV	ACGT	2 cut(s)	171, 1039
HpyCH4V	TGCA	4 cut(s)	616, 802, 917, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 425, 450
HpyF3I	CTNAG	5 cut(s)	3, 8, 411, 825, 867
HpySE526I	ACGT	2 cut(s)	171, 1039
Hsp92II	CATG	3 cut(s)	181, 881, 1001
HspAI	GCGC	4 cut(s)	37, 246, 291, 902
Kzo9I	GATC	4 cut(s)	215, 280, 579, 874
LmnI	GCTCC	4 cut(s)	44, 127, 371, 889
Lsp1109I	GCAGC	4 cut(s)	115, 260, 371, 986
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	2 cut(s)	171, 1039
MaeIII	GTNAC	4 cut(s)	155, 504, 857, 946
MalI	GATC	4 cut(s)	217, 282, 581, 876
MboI	GATC	4 cut(s)	215, 280, 579, 874
MboII	GAAGA	3 cut(s)	670, 977, 1018
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	2 cut(s)	28, 1019
MlsI	TGGCCA	1 cut(s)	934
MluCI	AATT	4 cut(s)	50, 435, 471, 939
MluNI	TGGCCA	1 cut(s)	934
MlyI	GAGTC	3 cut(s)	126, 422, 736
MmeI	TCCRAC	2 cut(s)	26, 234
Mox20I	TGGCCA	1 cut(s)	934
MscI	TGGCCA	1 cut(s)	934
MseI	TTAA	3 cut(s)	146, 338, 786
MslI	CAYNNNNRTG	2 cut(s)	458, 498
Msp20I	TGGCCA	1 cut(s)	934
MspA1I	CMGCKG	1 cut(s)	977
MspI	CCGG	8 cut(s)	22, 28, 42, 58, 63, 125, 186, 639
MspR9I	CCNGG	4 cut(s)	22, 23, 28, 187
MvnI	CGCG	1 cut(s)	904
MwoI	GCNNNNNNNGC	3 cut(s)	416, 425, 450
NciI	CCSGG	4 cut(s)	22, 23, 28, 187
NdeII	GATC	4 cut(s)	215, 280, 579, 874
NlaIII	CATG	3 cut(s)	181, 881, 1001
NlaIV	GGNNCC	4 cut(s)	20, 26, 519, 729
NmuCI	GTSAC	3 cut(s)	155, 504, 946
PagI	TCATGA	2 cut(s)	177, 997
PfeI	GAWTC	1 cut(s)	910
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	105, 250, 361, 976
Ple19I	CGATCG	1 cut(s)	283
PleI	GAGTC	3 cut(s)	125, 421, 736
PpsI	GAGTC	3 cut(s)	125, 421, 736
PpuMI	RGGWCCY	1 cut(s)	518
PshBI	ATTAAT	1 cut(s)	786
PsiI	TTATAA	1 cut(s)	350
Psp1406I	AACGTT	1 cut(s)	1039
Psp5II	RGGWCCY	1 cut(s)	518
PspFI	CCCAGC	1 cut(s)	449
PspN4I	GGNNCC	4 cut(s)	20, 26, 519, 729
PspOMI	GGGCCC	1 cut(s)	24
PspPI	GGNCC	8 cut(s)	18, 24, 25, 30, 60, 256, 467, 518
PspPPI	RGGWCCY	1 cut(s)	518
PstI	CTGCAG	1 cut(s)	976
PsuI	RGATCY	1 cut(s)	215
PsyI	GACNNNGTC	1 cut(s)	173
PvuI	CGATCG	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	3 cut(s)	386, 548, 695
RsaNI	GTAC	3 cut(s)	385, 547, 694
RseI	CAYNNNNRTG	2 cut(s)	458, 498
Rsr2I	CGGWCCG	1 cut(s)	60
RsrII	CGGWCCG	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	146, 338, 786
SatI	GCNGC	4 cut(s)	104, 249, 360, 975
Sau3AI	GATC	4 cut(s)	215, 280, 579, 874
Sau96I	GGNCC	8 cut(s)	18, 24, 25, 30, 60, 256, 467, 518
ScaI	AGTACT	1 cut(s)	548
SchI	GAGTC	3 cut(s)	126, 422, 736
ScrFI	CCNGG	4 cut(s)	22, 23, 28, 187
SduI	GDGCHC	2 cut(s)	28, 1019
SfcI	CTRYAG	1 cut(s)	972
SinI	GGWCC	5 cut(s)	18, 30, 60, 467, 518
SmaI	CCCGGG	1 cut(s)	23
SmiMI	CAYNNNNRTG	2 cut(s)	458, 498
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
Sse9I	AATT	4 cut(s)	50, 435, 471, 939
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	4 cut(s)	20, 21, 26, 185
StyI	CCWWGG	1 cut(s)	521
TaaI	ACNGT	2 cut(s)	229, 480
TaiI	ACGT	2 cut(s)	174, 1042
TaqI	TCGA	7 cut(s)	54, 84, 194, 279, 647, 671, 883
TasI	AATT	4 cut(s)	50, 435, 471, 939
TatI	WGTACW	2 cut(s)	384, 546
TfiI	GAWTC	1 cut(s)	910
Tru1I	TTAA	3 cut(s)	146, 338, 786
Tru9I	TTAA	3 cut(s)	146, 338, 786
TscAI	CASTG	1 cut(s)	847
TseFI	GTSAC	3 cut(s)	155, 504, 946
TseI	GCWGC	4 cut(s)	103, 248, 359, 974
Tsp45I	GTSAC	3 cut(s)	155, 504, 946
TspGWI	ACGGA	2 cut(s)	228, 229
TspMI	CCCGGG	1 cut(s)	21
TspRI	CASTG	1 cut(s)	847
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	5 cut(s)	18, 30, 60, 467, 518
VspI	ATTAAT	1 cut(s)	786
XapI	RAATTY	2 cut(s)	50, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmaI	CCCGGG	1 cut(s)	21
XmaJI	CCTAGG	1 cut(s)	521
XspI	CTAG	1 cut(s)	522
ZrmI	AGTACT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.