Rorug04G0409000

pyruvate, phosphate dikinase regulatory protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
57149130 .. 57150581
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0409000.1

Sequence Viewer

Length: 1212 bp
ATGGCTTCTTCTTCTTCTTCAACCTCACTCTTCTTCTTCTTCTTCTTCTTCTCTCTCCTCCTCACCTTCTCCTCCGCCCAAACCATCACCAACGCCGCCGAGATCCTCTCCGATTCCGGCTACAAATCCATGTCCCTCGCCCTCGACCTCGCCTCTCACTCCATCACCTCCCAGTCGCCGTCGCTCACAGTCTTCGCTCCGGCCGACGCCGCCTTCTCCAACTCCGGCCACCCCACTCTCAACCTCCTCCGCTACCACCTCCTCCCCATCGCGTTCCCTCTCCGATCACTCAAGTCCCTCCCTTTAGGCGCCAAGATCGCCACGCTGCTCGACGGCCACTCTCTCACCGTCACCACTCTGCCGTCCGACCGCCTCGTCTCGCTCAACAACGTCACCGTCACGGCGTCCCCAATTTTCGACGACGGGTCGTTGATCATCTTCGGAACCAACAGGTTCTTTGACCCGTATTTCCGGATCTCGGGTCCGATCCGGAGCTACAGCCCCAAGAATCTCTGCAGGTTGGCGTCGCGAAACCCTAACGAAGCGATGGCGGCCGAAACGGCGGCGCATTACCCGTTCAGTGAAGCAAGCAAGGTGCTGAAATTGAAAGGCTGCTCTGTTATGGCTTCGTTTCTTGAAATGCAATTCCATGGGTTTCTCAAGTACCAGACAATGTTGACCGTCTTCGCTCCCGTTGACCAAGCCATGGTGCCCCGAATCGGAGATCTGAGCGGGTACTCGTCGATCTTCCGCCGCCACGTGGTCCCCTGCAAGCTTTCTTGGAACGATTTGGTGAGTCTCGACGACGGCACTGTGTTGAGGACTAATCTGCAAGGGTTTATGATCAACATCACTCGATACGACGGCGTTTTGGTGCTCAATGGGGTCCCGGTGATAATGCCGGAGATGTATCACAACGGCTGGCTTGTGGTTCACGGAATCAGTGAGGTTCTTGAGTTTCCAGAGAGTCGACCGGAGCAAGTGGTGGCTCCTTCACCTGTCTCTGAGGCAGAGGGTCACAGCTCCGGTGAGGATGAGAGTGCCGGAACAGAGCCTTCGGAGCCAGTAATAGAGGTGCCTTCTTCACCGGAATTCGATAGCAGCGATTCGGAGGAATTGGATACTGGCGATTCTGAGCTATTTGCAAACATGTCTACCGATGATGAAGGAGCCATTTCACACAGGCGCTTCTTTGTTTACAGGCCTTCATAA

Protein Analysis

403

Amino Acids

44.0

Weight (kDa)

5.0

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 206 - 318 1.7e-08 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013019)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 507
AccB1I GGYRCC 3 cut(s) 308, 709, 1075
AccB7I CCANNNNNTGG 1 cut(s) 706
AccBSI CCGCTC 1 cut(s) 732
AccI GTMKAC 2 cut(s) 970, 1154
AccII CGCG 2 cut(s) 272, 529
AccIII TCCGGA 2 cut(s) 471, 489
AclWI GGATC 3 cut(s) 97, 481, 482
AcoI YGGCCR 4 cut(s) 201, 226, 334, 552
AcsI RAATTY 1 cut(s) 1091
AcvI CACGTG 1 cut(s) 760
AcyI GRCGYC 4 cut(s) 207, 309, 404, 524
AfaI GTAC 2 cut(s) 665, 737
AfiI CCNNNNNNNGG 4 cut(s) 478, 706, 719, 760
AflIII ACRYGT 1 cut(s) 1149
AgsI TTSAA 3 cut(s) 21, 607, 638
AhdI GACNNNNNGTC 1 cut(s) 424
AluBI AGCT 4 cut(s) 495, 775, 1023, 1138
AluI AGCT 4 cut(s) 495, 775, 1023, 1138
Alw21I GWGCWC 1 cut(s) 879
Alw26I GTCTC 3 cut(s) 382, 803, 1006
AlwI GGATC 3 cut(s) 97, 481, 482
Ama87I CYCGRG 1 cut(s) 478
Aor13HI TCCGGA 2 cut(s) 471, 489
AoxI GGCC 5 cut(s) 201, 226, 334, 552, 1202
ApeKI GCWGC 3 cut(s) 325, 612, 1101
ApoI RAATTY 1 cut(s) 1091
AspLEI GCGC 3 cut(s) 311, 568, 1188
AspS9I GGNCC 3 cut(s) 482, 763, 886
AsuC2I CCSGG 1 cut(s) 890
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 3 cut(s) 482, 763, 886
BaeGI GKGCMC 1 cut(s) 714
BanI GGYRCC 3 cut(s) 308, 709, 1075
BbrPI CACGTG 1 cut(s) 760
BbsI GAAGAC 2 cut(s) 184, 676
Bbv12I GWGCWC 1 cut(s) 879
BbvI GCAGC 3 cut(s) 312, 599, 1113
BccI CCATC 4 cut(s) 92, 170, 275, 541
BceAI ACGGC 8 cut(s) 163, 346, 349, 417, 576, 823, 880, 934
BciVI GTATCC 1 cut(s) 1114
BclI TGATCA 2 cut(s) 432, 843
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 382, 803, 1006
BfmI CTRYAG 2 cut(s) 496, 514
BfoI RGCGCY 2 cut(s) 312, 1189
BfuAI ACCTGC 1 cut(s) 507
BfuI GTATCC 1 cut(s) 1114
BglI GCCNNNNNGGC 1 cut(s) 560
BglII AGATCT 1 cut(s) 724
BisI GCNGC 8 cut(s) 96, 210, 326, 552, 564, 613, 754, 1102
BlsI GCNGC 8 cut(s) 97, 211, 327, 553, 565, 614, 755, 1103
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 3 cut(s) 482, 763, 886
BmeRI GACNNNNNGTC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 3 cut(s) 482, 763, 886
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 2 cut(s) 184, 676
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpuEI CTTGAG 3 cut(s) 275, 644, 974
BpuMI CCSGG 1 cut(s) 890
BsaAI YACGTR 1 cut(s) 760
BsaBI GATNNNNATC 1 cut(s) 848
BsaHI GRCGYC 4 cut(s) 207, 309, 404, 524
BsaJI CCNNGG 2 cut(s) 649, 705
BsaWI WCCGGW 5 cut(s) 471, 489, 973, 1025, 1087
Bsc4I CCNNNNNNNGG 4 cut(s) 478, 706, 719, 760
Bse1I ACTGG 3 cut(s) 172, 1064, 1129
Bse8I GATNNNNATC 1 cut(s) 848
BseAI TCCGGA 2 cut(s) 471, 489
BseDI CCNNGG 2 cut(s) 649, 705
BseGI GGATG 1 cut(s) 1039
BseJI GATNNNNATC 1 cut(s) 848
BseLI CCNNNNNNNGG 4 cut(s) 478, 706, 719, 760
BseMII CTCAG 3 cut(s) 719, 996, 1125
BseNI ACTGG 3 cut(s) 172, 1064, 1129
BseRI GAGGAG 5 cut(s) 47, 50, 61, 236, 251
BseSI GKGCMC 1 cut(s) 714
BseX3I CGGCCG 2 cut(s) 201, 552
BseXI GCAGC 3 cut(s) 312, 599, 1113
Bsh1236I CGCG 2 cut(s) 272, 529
Bsh1285I CGRYCG 4 cut(s) 204, 370, 555, 974
BshFI GGCC 5 cut(s) 203, 228, 336, 554, 1204
BshNI GGYRCC 3 cut(s) 308, 709, 1075
BsiEI CGRYCG 4 cut(s) 204, 370, 555, 974
BsiHKAI GWGCWC 1 cut(s) 879
BsiHKCI CYCGRG 1 cut(s) 478
BslFI GGGAC 5 cut(s) 118, 280, 391, 749, 872
BslI CCNNNNNNNGG 4 cut(s) 478, 706, 719, 760
BsmAI GTCTC 3 cut(s) 382, 803, 1006
BsmBI CGTCTC 1 cut(s) 382
BsmFI GGGAC 5 cut(s) 118, 280, 391, 749, 872
BsnI GGCC 5 cut(s) 203, 228, 336, 554, 1204
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 2 cut(s) 714, 879
Bsp13I TCCGGA 2 cut(s) 471, 489
Bsp143I GATC 9 cut(s) 102, 284, 315, 432, 474, 486, 724, 744, 843
Bsp19I CCATGG 2 cut(s) 649, 705
Bsp68I TCGCGA 1 cut(s) 529
BspANI GGCC 5 cut(s) 203, 228, 336, 554, 1204
BspCNI CTCAG 3 cut(s) 720, 997, 1126
BspEI TCCGGA 2 cut(s) 471, 489
BspFNI CGCG 2 cut(s) 272, 529
BspMAI CTGCAG 1 cut(s) 518
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 3 cut(s) 97, 481, 482
BspT107I GGYRCC 3 cut(s) 308, 709, 1075
BsrBI CCGCTC 1 cut(s) 732
BsrI ACTGG 3 cut(s) 172, 1064, 1129
BssECI CCNNGG 2 cut(s) 649, 705
BssMI GATC 9 cut(s) 102, 284, 315, 432, 474, 486, 724, 744, 843
BssNI GRCGYC 4 cut(s) 207, 309, 404, 524
BssT1I CCWWGG 2 cut(s) 649, 705
Bst4CI ACNGT 5 cut(s) 190, 349, 397, 682, 814
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 4 cut(s) 207, 309, 404, 524
BstBAI YACGTR 1 cut(s) 760
BstC8I GCNNGC 3 cut(s) 589, 773, 923
BstDEI CTNAG 3 cut(s) 728, 1005, 1134
BstDSI CCRYGG 2 cut(s) 649, 705
BstF5I GGATG 1 cut(s) 1039
BstFNI CGCG 2 cut(s) 272, 529
BstH2I RGCGCY 2 cut(s) 312, 1189
BstHHI GCGC 3 cut(s) 311, 568, 1188
BstKTI GATC 9 cut(s) 105, 287, 318, 435, 477, 489, 727, 747, 846
BstMAI GTCTC 3 cut(s) 382, 803, 1006
BstMBI GATC 9 cut(s) 102, 284, 315, 432, 474, 486, 724, 744, 843
BstMCI CGRYCG 4 cut(s) 204, 370, 555, 974
BstMWI GCNNNNNNNGC 5 cut(s) 209, 317, 551, 560, 1060
BstNSI RCATGY 1 cut(s) 1153
BstSCI CCNGG 1 cut(s) 888
BstSFI CTRYAG 2 cut(s) 496, 514
BstSLI GKGCMC 1 cut(s) 714
BstUI CGCG 2 cut(s) 272, 529
BstV1I GCAGC 3 cut(s) 312, 599, 1113
BstV2I GAAGAC 2 cut(s) 184, 676
BstX2I RGATCY 3 cut(s) 102, 474, 724
BstYI RGATCY 3 cut(s) 102, 474, 724
BstZI CGGCCG 2 cut(s) 201, 552
BsuI GTATCC 1 cut(s) 1114
BsuRI GGCC 5 cut(s) 203, 228, 336, 554, 1204
BtgI CCRYGG 2 cut(s) 649, 705
BtgZI GCGATG 2 cut(s) 253, 560
BtsCI GGATG 1 cut(s) 1039
BtsIMutI CAGTG 3 cut(s) 586, 810, 949
BtuMI TCGCGA 1 cut(s) 529
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 589, 773, 923
CfoI GCGC 3 cut(s) 311, 568, 1188
Cfr13I GGNCC 3 cut(s) 482, 763, 886
CseI GACGC 3 cut(s) 215, 393, 513
Csp6I GTAC 2 cut(s) 664, 736
CviAII CATG 4 cut(s) 130, 650, 706, 1150
CviQI GTAC 2 cut(s) 664, 736
DdeI CTNAG 3 cut(s) 728, 1005, 1134
DinI GGCGCC 1 cut(s) 310
DpnI GATC 9 cut(s) 104, 286, 317, 434, 476, 488, 726, 746, 845
DpnII GATC 9 cut(s) 102, 284, 315, 432, 474, 486, 724, 744, 843
DrdI GACNNNNNNGTC 1 cut(s) 374
DriI GACNNNNNGTC 1 cut(s) 424
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 4 cut(s) 201, 226, 334, 552
EagI CGGCCG 2 cut(s) 201, 552
Eam1104I CTCTTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 2 cut(s) 64, 740
EclXI CGGCCG 2 cut(s) 201, 552
Eco130I CCWWGG 2 cut(s) 649, 705
Eco147I AGGCCT 1 cut(s) 1204
Eco47I GGWCC 3 cut(s) 482, 763, 886
Eco52I CGGCCG 2 cut(s) 201, 552
Eco72I CACGTG 1 cut(s) 760
Eco88I CYCGRG 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 886
EcoRI GAATTC 1 cut(s) 1091
EcoT14I CCWWGG 2 cut(s) 649, 705
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 649, 705
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 4 cut(s) 133, 653, 709, 1153
FaiI YATR 7 cut(s) 131, 623, 651, 707, 842, 1151, 1210
FaqI GGGAC 5 cut(s) 118, 280, 391, 749, 872
FatI CATG 4 cut(s) 129, 649, 705, 1149
FauI CCCGC 1 cut(s) 725
FbaI TGATCA 2 cut(s) 432, 843
FblI GTMKAC 2 cut(s) 970, 1154
Fnu4HI GCNGC 8 cut(s) 96, 210, 326, 552, 564, 613, 754, 1102
FokI GGATG 1 cut(s) 1046
Fsp4HI GCNGC 8 cut(s) 96, 210, 326, 552, 564, 613, 754, 1102
GlaI GCGC 3 cut(s) 310, 567, 1187
GluI GCNGC 8 cut(s) 96, 210, 326, 552, 564, 613, 754, 1102
HaeII RGCGCY 2 cut(s) 312, 1189
HaeIII GGCC 5 cut(s) 203, 228, 336, 554, 1204
HgaI GACGC 3 cut(s) 215, 393, 513
HhaI GCGC 3 cut(s) 311, 568, 1188
Hin1I GRCGYC 4 cut(s) 207, 309, 404, 524
Hin1II CATG 4 cut(s) 133, 653, 709, 1153
Hin6I GCGC 3 cut(s) 309, 566, 1186
HinP1I GCGC 3 cut(s) 309, 566, 1186
HincII GTYRAC 3 cut(s) 678, 697, 971
HindII GTYRAC 3 cut(s) 678, 697, 971
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 8 cut(s) 113, 508, 717, 796, 939, 967, 1106, 1130
Hpy166II GTNNAC 6 cut(s) 678, 697, 934, 971, 1155, 1198
Hpy188III TCNNGA 7 cut(s) 472, 490, 528, 635, 800, 953, 962
Hpy8I GTNNAC 6 cut(s) 678, 697, 934, 971, 1155, 1198
HpyAV CCTTC 6 cut(s) 76, 223, 1002, 1065, 1089, 1160
HpyCH4III ACNGT 5 cut(s) 190, 349, 397, 682, 814
HpyCH4IV ACGT 2 cut(s) 390, 759
HpyCH4V TGCA 5 cut(s) 516, 643, 771, 832, 1145
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 317, 551, 560, 1060
HpyF3I CTNAG 3 cut(s) 728, 1005, 1134
HpySE526I ACGT 2 cut(s) 390, 759
Hsp92I GRCGYC 4 cut(s) 207, 309, 404, 524
Hsp92II CATG 4 cut(s) 133, 653, 709, 1153
HspAI GCGC 3 cut(s) 309, 566, 1186
KasI GGCGCC 1 cut(s) 308
KflI GGGWCCC 1 cut(s) 886
Kpn2I TCCGGA 2 cut(s) 471, 489
Ksp22I TGATCA 2 cut(s) 432, 843
Kzo9I GATC 9 cut(s) 102, 284, 315, 432, 474, 486, 724, 744, 843
LmnI GCTCC 8 cut(s) 202, 492, 694, 976, 994, 1028, 1060, 1169
Lsp1109I GCAGC 3 cut(s) 312, 599, 1113
MaeII ACGT 2 cut(s) 390, 759
MaeIII GTNAC 4 cut(s) 349, 391, 397, 1016
MalI GATC 9 cut(s) 104, 286, 317, 434, 476, 488, 726, 746, 845
MbiI CCGCTC 1 cut(s) 732
MboI GATC 9 cut(s) 102, 284, 315, 432, 474, 486, 724, 744, 843
MflI RGATCY 3 cut(s) 102, 474, 724
MhlI GDGCHC 2 cut(s) 714, 879
MluCI AATT 5 cut(s) 411, 602, 644, 1091, 1115
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 2 cut(s) 805, 976
MmeI TCCRAC 2 cut(s) 243, 390
MroI TCCGGA 2 cut(s) 471, 489
MspR9I CCNGG 1 cut(s) 890
MvnI CGCG 2 cut(s) 272, 529
MwoI GCNNNNNNNGC 5 cut(s) 209, 317, 551, 560, 1060
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 2 cut(s) 649, 705
NdeII GATC 9 cut(s) 102, 284, 315, 432, 474, 486, 724, 744, 843
NlaIII CATG 4 cut(s) 133, 653, 709, 1153
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 4 cut(s) 349, 391, 397, 1016
NruI TCGCGA 1 cut(s) 529
NspI RCATGY 1 cut(s) 1153
PceI AGGCCT 1 cut(s) 1204
PciI ACATGT 1 cut(s) 1149
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 1101
PfeI GAWTC 6 cut(s) 113, 508, 717, 939, 1106, 1130
PflMI CCANNNNNTGG 1 cut(s) 706
PkrI GCNGC 8 cut(s) 97, 211, 327, 553, 565, 614, 755, 1103
PleI GAGTC 2 cut(s) 804, 975
PluTI GGCGCC 1 cut(s) 312
PmaCI CACGTG 1 cut(s) 760
PmlI CACGTG 1 cut(s) 760
PpsI GAGTC 2 cut(s) 804, 975
Ppu21I YACGTR 1 cut(s) 760
PpuMI RGGWCCY 1 cut(s) 886
PscI ACATGT 1 cut(s) 1149
Psp5II RGGWCCY 1 cut(s) 886
PspCI CACGTG 1 cut(s) 760
PspPI GGNCC 3 cut(s) 482, 763, 886
PspPPI RGGWCCY 1 cut(s) 886
PstI CTGCAG 1 cut(s) 518
PsuI RGATCY 3 cut(s) 102, 474, 724
RruI TCGCGA 1 cut(s) 529
RsaI GTAC 2 cut(s) 665, 737
RsaNI GTAC 2 cut(s) 664, 736
SalI GTCGAC 1 cut(s) 969
SatI GCNGC 8 cut(s) 96, 210, 326, 552, 564, 613, 754, 1102
Sau3AI GATC 9 cut(s) 102, 284, 315, 432, 474, 486, 724, 744, 843
Sau96I GGNCC 3 cut(s) 482, 763, 886
SchI GAGTC 2 cut(s) 805, 976
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 2 cut(s) 714, 879
SfcI CTRYAG 2 cut(s) 496, 514
SfoI GGCGCC 1 cut(s) 310
SinI GGWCC 3 cut(s) 482, 763, 886
SmlI CTYRAG 3 cut(s) 290, 659, 953
SmoI CTYRAG 3 cut(s) 290, 659, 953
Sse9I AATT 5 cut(s) 411, 602, 644, 1091, 1115
SseBI AGGCCT 1 cut(s) 1204
SspDI GGCGCC 1 cut(s) 308
StuI AGGCCT 1 cut(s) 1204
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 2 cut(s) 649, 705
TaaI ACNGT 5 cut(s) 190, 349, 397, 682, 814
TaiI ACGT 2 cut(s) 393, 762
TaqI TCGA 8 cut(s) 144, 330, 417, 743, 801, 856, 970, 1095
TasI AATT 5 cut(s) 411, 602, 644, 1091, 1115
TauI GCSGC 5 cut(s) 98, 212, 554, 566, 756
TfiI GAWTC 6 cut(s) 113, 508, 717, 939, 1106, 1130
TscAI CASTG 3 cut(s) 586, 817, 949
TseFI GTSAC 4 cut(s) 349, 391, 397, 1016
TseI GCWGC 3 cut(s) 325, 612, 1101
Tsp45I GTSAC 4 cut(s) 349, 391, 397, 1016
TspDTI ATGAA 2 cut(s) 1179, 1197
TspGWI ACGGA 1 cut(s) 951
TspRI CASTG 3 cut(s) 586, 817, 949
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 3 cut(s) 482, 763, 886
XapI RAATTY 1 cut(s) 1091
XceI RCATGY 1 cut(s) 1153
XmiI GTMKAC 2 cut(s) 970, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.