FvH4_3g03720

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014684
Physical Location & Seq
Reverse (-)
2079582 .. 2081684
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03720.t1

Sequence Viewer

Length: 999 bp
ATGGAGCTCTTTGCTCTTGAAGAACACAACCCAGATTCTATCCCTGACTTTTTTGCCTCAGAAGCTGATCATATGCCCTCACAGACCTTCTTAACCAGCTCCATACACTCGGATTTCTACCGCTCATTTCGACTCGAGGCCATTTCTCTGTTTTTACAGGCACAGTATTCCTGCAACCTTGACCCTTTCACTTCTTACATTGCCCTTAACTACCTGGATCGGTTCATTTCCAAGCACAACATTCCGCAAGGAAAGCCTTGGGTGACAAGACTAGTTGAACTTGCCTGCCTATCTCTAGCTGCAAAAATGAAGAACACGTCCTTTTCGCTCTCTGATTTTCAGAGTAGAGAAGAAGGTTTCATGTTTGGGGCGCAAACGATTAACAGAATGGAGCTTCTGATTCTCGACACATTAAATTGGAGGATGAGATCAATAACTCCGTTCTCCTTTCTACATTTCTTTGTCACATTGGTGGACATAAATGAGAGACCACTCATTCAAGCCCTCAAAAGTCGAGCTTCAGATATCATCTTTAATGCCCATAATGAAACCAAATTCGTTGAGTTTAAGCCATCGATAATTGCAGCATCCGCGGTTTTAGCTGCGAGTCATGAAATTCTCCCCTTGCAGTTTCCTAGTTTAAAAGTTTCAATATCATCTTGCCAGTATGTAAATAAAGAGAGTTTGTTTAAATGCTTGAACCTAATGCATGAAATGGTAACGAGTGAAGGGTATGACTCAGTTTTAGATACTTTGTCATGCACAACTAGAACCCCAATTAGCGTGCTGGACCACCGTCACTTCTCTAGCTCCGAAAGCGAGGTTAATAGCACCGCTGTCACTACCACCACCGAAGCTGCGGCTGCAGCATATAGTGATTCTAGTACTAGTAGTGTAATGGTGGCAGAGAAGAAAGACAGCAAGCGGCGTAGATTGAATGGTTTTTGTACAAGTGAAAATAGGTTCCTGGTTTCTTCTCATCATGTTCAACATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

333

Amino Acids

37.52

Weight (kDa)

6.0

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 18 - 143 3.6e-21 Cyclin, N-terminal domain
Cyclin_C PF02984 145 - 243 1.4e-09 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03720
malus_domestica MD05G1327100.v1.1 MD10G1305200.v1.1
prunus_persica Prupe.4G034400_v2.0.a1
pyrus_communis pycom10g25770
rosa_chinensis RchiOBHm_Chr5g0005771
rosa_laevigata RLG00000031325
rosa_multiflora Rmu_sc0014513.1_g000001 Rmu_sc0017047.1_g000001
rosa_roxburghii Rroxscaffold_1G00070090
rosa_rugosa Rorug04G0418000 Rorug04G0418100
rosa_samantha Rh5AG045500 Rh5BG044200 Rh5CG053000 Rh5DG044000
rosa_wichuraiana Rw5G004580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 123
AccII CGCG 1 cut(s) 593
AciI CCGC 7 cut(s) 121, 245, 591, 593, 834, 860, 925
AclWI GGATC 1 cut(s) 225
AcsI RAATTY 2 cut(s) 554, 615
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 2 cut(s) 886, 949
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 7 cut(s) 20, 278, 500, 651, 700, 937, 989
AhlI ACTAGT 2 cut(s) 271, 887
AjiI CACGTC 1 cut(s) 318
AjnI CCWGG 2 cut(s) 213, 966
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 9 cut(s) 7, 65, 99, 299, 394, 518, 602, 810, 857
AluI AGCT 9 cut(s) 7, 65, 99, 299, 394, 518, 602, 810, 857
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 1 cut(s) 225
AlwNI CAGNNNCTG 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 6 cut(s) 299, 584, 602, 857, 863, 866
ApoI RAATTY 2 cut(s) 554, 615
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 790
AsuHPI GGTGA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 790
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 6 cut(s) 286, 589, 596, 844, 850, 878
BccI CCATC 1 cut(s) 580
BciT130I CCWGG 2 cut(s) 215, 968
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 481
BcuI ACTAGT 2 cut(s) 271, 887
BfaI CTAG 7 cut(s) 272, 296, 636, 768, 807, 882, 888
BfmI CTRYAG 1 cut(s) 864
BisI GCNGC 8 cut(s) 300, 585, 603, 858, 861, 864, 867, 926
BlsI GCNGC 8 cut(s) 301, 586, 604, 859, 862, 865, 868, 927
BmcAI AGTACT 1 cut(s) 886
Bme1390I CCNGG 2 cut(s) 215, 968
Bme18I GGWCC 1 cut(s) 790
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 790
BmiI GGNNCC 1 cut(s) 965
BmrFI CCNGG 2 cut(s) 215, 968
BmsI GCATC 1 cut(s) 596
BoxI GACNNNNGTC 1 cut(s) 795
Bsa29I ATCGAT 1 cut(s) 575
BsaI GGTCTC 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 257, 591
Bse1I ACTGG 1 cut(s) 664
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 2 cut(s) 215, 968
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 257, 591
BseGI GGATG 2 cut(s) 429, 587
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 72, 753
BseNI ACTGG 1 cut(s) 664
BseXI GCAGC 6 cut(s) 286, 589, 596, 844, 850, 878
Bsh1236I CGCG 1 cut(s) 593
BshFI GGCC 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 575
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 481
BsnI GGCC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 481
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 947
Bsp143I GATC 3 cut(s) 67, 217, 428
BspACI CCGC 7 cut(s) 121, 245, 591, 593, 834, 860, 925
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 71, 752
BspDI ATCGAT 1 cut(s) 575
BspFNI CGCG 1 cut(s) 593
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 1 cut(s) 965
BspMAI CTGCAG 1 cut(s) 868
BspPI GGATC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 481
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 198
BsrGI TGTACA 1 cut(s) 947
BsrI ACTGG 1 cut(s) 664
BssECI CCNNGG 2 cut(s) 257, 591
BssMI GATC 3 cut(s) 67, 217, 428
BssT1I CCWWGG 1 cut(s) 257
Bst2UI CCWGG 2 cut(s) 215, 968
Bst4CI ACNGT 2 cut(s) 165, 797
BstAUI TGTACA 1 cut(s) 947
BstC8I GCNNGC 3 cut(s) 286, 785, 923
BstDEI CTNAG 2 cut(s) 58, 739
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 429, 587
BstFNI CGCG 1 cut(s) 593
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 3 cut(s) 70, 220, 431
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 3 cut(s) 67, 217, 428
BstMWI GCNNNNNNNGC 7 cut(s) 62, 253, 590, 599, 816, 863, 866
BstNI CCWGG 2 cut(s) 215, 968
BstPAI GACNNNNGTC 1 cut(s) 795
BstSCI CCNGG 2 cut(s) 213, 966
BstSFI CTRYAG 1 cut(s) 864
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 6 cut(s) 286, 589, 596, 844, 850, 878
Bsu15I ATCGAT 1 cut(s) 575
BsuRI GGCC 1 cut(s) 140
BsuTUI ATCGAT 1 cut(s) 575
BtgI CCRYGG 1 cut(s) 591
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 2 cut(s) 429, 587
Cac8I GCNNGC 3 cut(s) 286, 785, 923
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 1 cut(s) 610
CfoI GCGC 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 790
Cfr42I CCGCGG 1 cut(s) 594
ClaI ATCGAT 1 cut(s) 575
Csp6I GTAC 2 cut(s) 885, 948
CviAII CATG 5 cut(s) 361, 611, 710, 759, 983
CviQI GTAC 2 cut(s) 885, 948
DdeI CTNAG 2 cut(s) 58, 739
DpnI GATC 3 cut(s) 69, 219, 430
DpnII GATC 3 cut(s) 67, 217, 428
DraI TTTAAA 2 cut(s) 642, 691
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 481
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 790
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 213, 966
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 257
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 5 cut(s) 364, 614, 713, 762, 986
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FatI CATG 5 cut(s) 360, 610, 709, 758, 982
FauNDI CATATG 1 cut(s) 72
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 8 cut(s) 300, 585, 603, 858, 861, 864, 867, 926
FokI GGATG 2 cut(s) 436, 574
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 8 cut(s) 300, 585, 603, 858, 861, 864, 867, 926
FspBI CTAG 7 cut(s) 272, 296, 636, 768, 807, 882, 888
GlaI GCGC 1 cut(s) 372
GluI GCNGC 8 cut(s) 300, 585, 603, 858, 861, 864, 867, 926
HaeIII GGCC 1 cut(s) 140
HhaI GCGC 1 cut(s) 373
Hin1II CATG 5 cut(s) 364, 614, 713, 762, 986
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HinfI GANTC 6 cut(s) 35, 132, 400, 607, 737, 878
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 7 cut(s) 61, 112, 334, 342, 399, 523, 814
Hpy188III TCNNGA 3 cut(s) 17, 404, 611
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 3 cut(s) 97, 347, 722
HpyCH4III ACNGT 2 cut(s) 165, 797
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 7 cut(s) 174, 302, 584, 628, 709, 762, 866
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 253, 590, 599, 816, 863, 866
HpyF3I CTNAG 2 cut(s) 58, 739
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 5 cut(s) 364, 614, 713, 762, 986
HspAI GCGC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 67
KspI CCGCGG 1 cut(s) 594
Kzo9I GATC 3 cut(s) 67, 217, 428
LmnI GCTCC 4 cut(s) 4, 104, 391, 815
Lsp1109I GCAGC 6 cut(s) 286, 589, 596, 844, 850, 878
LweI GCATC 1 cut(s) 596
MaeI CTAG 7 cut(s) 272, 296, 636, 768, 807, 882, 888
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 5 cut(s) 262, 463, 718, 797, 838
MalI GATC 3 cut(s) 69, 219, 430
MbiI CCGCTC 1 cut(s) 123
MboI GATC 3 cut(s) 67, 217, 428
MboII GAAGA 5 cut(s) 32, 322, 362, 922, 966
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 5 cut(s) 415, 554, 579, 615, 777
MlyI GAGTC 3 cut(s) 126, 616, 731
MnlI CCTC 6 cut(s) 67, 88, 130, 414, 515, 814
Mph1103I ATGCAT 1 cut(s) 711
MseI TTAA 9 cut(s) 92, 207, 381, 413, 534, 567, 641, 690, 825
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 2 cut(s) 593, 836
MspR9I CCNGG 2 cut(s) 215, 968
MvaI CCWGG 2 cut(s) 215, 968
MvnI CGCG 1 cut(s) 593
MwoI GCNNNNNNNGC 7 cut(s) 62, 253, 590, 599, 816, 863, 866
NdeI CATATG 1 cut(s) 72
NdeII GATC 3 cut(s) 67, 217, 428
NlaIII CATG 5 cut(s) 364, 614, 713, 762, 986
NlaIV GGNNCC 1 cut(s) 965
NmuCI GTSAC 4 cut(s) 262, 463, 797, 838
NsiI ATGCAT 1 cut(s) 711
OliI CACNNNNGTG 1 cut(s) 470
PaeR7I CTCGAG 1 cut(s) 134
PagI TCATGA 1 cut(s) 610
PfeI GAWTC 3 cut(s) 35, 400, 878
PkrI GCNGC 8 cut(s) 301, 586, 604, 859, 862, 865, 868, 927
PleI GAGTC 3 cut(s) 126, 615, 731
PpsI GAGTC 3 cut(s) 126, 615, 731
PshAI GACNNNNGTC 1 cut(s) 795
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 213, 966
PspGI CCWGG 2 cut(s) 213, 966
PspN4I GGNNCC 1 cut(s) 965
PspPI GGNCC 1 cut(s) 790
PspXI VCTCGAGB 1 cut(s) 134
PstI CTGCAG 1 cut(s) 868
PstNI CAGNNNCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 886, 949
RsaNI GTAC 2 cut(s) 885, 948
RseI CAYNNNNRTG 1 cut(s) 470
SacI GAGCTC 1 cut(s) 9
SacII CCGCGG 1 cut(s) 594
SaqAI TTAA 9 cut(s) 92, 207, 381, 413, 534, 567, 641, 690, 825
SatI GCNGC 8 cut(s) 300, 585, 603, 858, 861, 864, 867, 926
Sau3AI GATC 3 cut(s) 67, 217, 428
Sau96I GGNCC 1 cut(s) 790
ScaI AGTACT 1 cut(s) 886
SchI GAGTC 3 cut(s) 126, 616, 731
ScrFI CCNGG 2 cut(s) 215, 968
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 1 cut(s) 596
SfcI CTRYAG 1 cut(s) 864
Sfr274I CTCGAG 1 cut(s) 134
Sfr303I CCGCGG 1 cut(s) 594
SgrBI CCGCGG 1 cut(s) 594
SinI GGWCC 1 cut(s) 790
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SpeI ACTAGT 2 cut(s) 271, 887
Sse9I AATT 5 cut(s) 415, 554, 579, 615, 777
SsiI CCGC 7 cut(s) 121, 245, 591, 593, 834, 860, 925
SspMI CTAG 7 cut(s) 272, 296, 636, 768, 807, 882, 888
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 213, 966
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 2 cut(s) 165, 797
TaiI ACGT 1 cut(s) 320
TaqI TCGA 5 cut(s) 130, 135, 405, 514, 575
TasI AATT 5 cut(s) 415, 554, 579, 615, 777
TatI WGTACW 2 cut(s) 884, 947
TauI GCSGC 2 cut(s) 863, 928
TfiI GAWTC 3 cut(s) 35, 400, 878
Tru1I TTAA 9 cut(s) 92, 207, 381, 413, 534, 567, 641, 690, 825
Tru9I TTAA 9 cut(s) 92, 207, 381, 413, 534, 567, 641, 690, 825
TseFI GTSAC 4 cut(s) 262, 463, 797, 838
TseI GCWGC 6 cut(s) 299, 584, 602, 857, 863, 866
Tsp45I GTSAC 4 cut(s) 262, 463, 797, 838
TspDTI ATGAA 6 cut(s) 214, 323, 349, 561, 627, 726
TspGWI ACGGA 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 790
XapI RAATTY 2 cut(s) 554, 615
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 7 cut(s) 272, 296, 636, 768, 807, 882, 888
ZrmI AGTACT 1 cut(s) 886
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.