Rh5CG053000

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014684
Physical Location & Seq
Reverse (-)
3795600 .. 3798911
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG053000.1

Sequence Viewer

Length: 807 bp
ATGCGAAGCTTCTCTTTCCCATCATTATTACTCTCTTCCTCTAACAACTTTTGCTCCCATGTCCTTAACTCCTTGAGCTCCTCATCAATCACTCAAAACAAGTCGAACATGGAGCTCTTTGATGTTGAAGAACACAACCCAGATTCTATCCCAGATCTATTTGCCTCAGAAACCGATCACATGCCCTCACAGAACTTCTTAACCAGCTCCATACACTCGGATTTCTACTGCTCATTTCGACTCGAGGCCATTTCTCTGTTTTTACAGGCACAGTATTCCTGCAACCTTGACCCTTTCATTCCTTACCTTGCCATTAACTACCTGGATCGGTTCATTTCCAAGCAAAACATTCCGCAAGGAAAGCCTTGGGTTTCAAGACTTGTTGAAGTCACCTGCCTGTCTCTAGCTGCAAAAATGAAGAACACTTCATTCTCATTCTCTGATTTTCAGAGAAGAGAAGAAGGTTTCATGTTTGAGGCGCAAACGATTAACAAAATGGAGCTTGTGATTCTCGACACATTAAATTGGAGGATGAAATCAATAACTCCTTTCTCCTTTCTACATTTCTTTGTGTCTTTGGTGGACATAAATGAGCGACCACTCACTCAAGCCCTGAAATGTCGAGCTTCAGATGTCATCTTCAATGCCCATAATGAAATCAAATTCGTTGAGTTTAAGCCATCGATAATTGCGGCATCGGCAGTTTTGTTTGCAAGTCATGAGCTACTTCCATTGCAGTTTCCTAGTTTAATAGTTTCAATATCATCTTGCCAATATGTAAATAAAGTGAGTACATTGTCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

268

Amino Acids

30.51

Weight (kDa)

5.79

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 54 - 178 1.7e-21 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03720
malus_domestica MD05G1327100.v1.1 MD10G1305200.v1.1
prunus_persica Prupe.4G034400_v2.0.a1
pyrus_communis pycom10g25770
rosa_chinensis RchiOBHm_Chr5g0005771
rosa_laevigata RLG00000031325
rosa_multiflora Rmu_sc0014513.1_g000001 Rmu_sc0017047.1_g000001
rosa_roxburghii Rroxscaffold_1G00070090
rosa_rugosa Rorug04G0418000 Rorug04G0418100
rosa_samantha Rh5AG045500 Rh5BG044200 Rh5CG053000 Rh5DG044000
rosa_wichuraiana Rw5G004580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 401
AciI CCGC 2 cut(s) 353, 692
AclWI GGATC 1 cut(s) 333
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 1 cut(s) 793
AgsI TTSAA 5 cut(s) 128, 375, 386, 643, 759
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 8 cut(s) 9, 78, 115, 207, 407, 502, 626, 724
AluI AGCT 8 cut(s) 9, 78, 115, 207, 407, 502, 626, 724
Alw21I GWGCWC 2 cut(s) 80, 117
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 662
AspLEI GCGC 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 242
BanII GRGCYC 2 cut(s) 80, 117
Bbv12I GWGCWC 2 cut(s) 80, 117
BbvI GCAGC 1 cut(s) 394
BccI CCATC 2 cut(s) 28, 688
BciT130I CCWGG 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 2 cut(s) 404, 744
BfuAI ACCTGC 1 cut(s) 401
BglII AGATCT 1 cut(s) 154
BisI GCNGC 2 cut(s) 408, 693
BlsI GCNGC 2 cut(s) 409, 694
Bme1390I CCNGG 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 94, 591
Bsa29I ATCGAT 1 cut(s) 683
BsaJI CCNNGG 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bse3DI GCAATG 1 cut(s) 731
BseBI CCWGG 1 cut(s) 323
BseCI ATCGAT 1 cut(s) 683
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 537
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 394
BshFI GGCC 1 cut(s) 248
BshVI ATCGAT 1 cut(s) 683
BsiHKAI GWGCWC 2 cut(s) 80, 117
BsiHKCI CYCGRG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 405
BsnI GGCC 1 cut(s) 248
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 80, 117
Bsp143I GATC 3 cut(s) 154, 175, 325
BspACI CCGC 2 cut(s) 353, 692
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 683
BspHI TCATGA 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 731
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 3 cut(s) 154, 175, 325
BssT1I CCWWGG 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 2 cut(s) 40, 448
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 537
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 3 cut(s) 157, 178, 328
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 3 cut(s) 154, 175, 325
BstMWI GCNNNNNNNGC 2 cut(s) 361, 698
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 683
BsuRI GGCC 1 cut(s) 248
BsuTUI ATCGAT 1 cut(s) 683
BtsCI GGATG 1 cut(s) 537
BveI ACCTGC 1 cut(s) 401
CciI TCATGA 1 cut(s) 718
CfoI GCGC 1 cut(s) 481
ClaI ATCGAT 1 cut(s) 683
Csp6I GTAC 1 cut(s) 792
CviAII CATG 5 cut(s) 59, 109, 181, 469, 719
CviQI GTAC 1 cut(s) 792
DdeI CTNAG 1 cut(s) 166
DpnI GATC 3 cut(s) 156, 177, 327
DpnII GATC 3 cut(s) 154, 175, 325
Eam1104I CTCTTC 2 cut(s) 40, 448
EarI CTCTTC 2 cut(s) 40, 448
Ecl136II GAGCTC 2 cut(s) 78, 115
Eco130I CCWWGG 1 cut(s) 365
Eco24I GRGCYC 2 cut(s) 80, 117
Eco53kI GAGCTC 2 cut(s) 78, 115
Eco57I CTGAAG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 2 cut(s) 78, 115
EcoRII CCWGG 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 365
EcoT38I GRGCYC 2 cut(s) 80, 117
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 5 cut(s) 62, 112, 184, 472, 722
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 5 cut(s) 58, 108, 180, 468, 718
Fnu4HI GCNGC 2 cut(s) 408, 693
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 2 cut(s) 80, 117
Fsp4HI GCNGC 2 cut(s) 408, 693
FspBI CTAG 2 cut(s) 404, 744
GlaI GCGC 1 cut(s) 480
GluI GCNGC 2 cut(s) 408, 693
HaeIII GGCC 1 cut(s) 248
HhaI GCGC 1 cut(s) 481
Hin1II CATG 5 cut(s) 62, 112, 184, 472, 722
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 143, 240, 508
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 5 cut(s) 169, 220, 442, 450, 631
Hpy188III TCNNGA 3 cut(s) 375, 512, 719
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 1 cut(s) 455
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 4 cut(s) 282, 410, 713, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 698
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 5 cut(s) 62, 112, 184, 472, 722
HspAI GCGC 1 cut(s) 479
Kzo9I GATC 3 cut(s) 154, 175, 325
LmnI GCTCC 5 cut(s) 59, 83, 112, 212, 499
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 1 cut(s) 704
MaeI CTAG 2 cut(s) 404, 744
MaeIII GTNAC 1 cut(s) 388
MalI GATC 3 cut(s) 156, 177, 327
MboI GATC 3 cut(s) 154, 175, 325
MboII GAAGA 6 cut(s) 27, 140, 430, 465, 470, 631
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 80, 117
MluCI AATT 3 cut(s) 523, 662, 687
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 7 cut(s) 49, 91, 175, 196, 238, 469, 522
MseI TTAA 7 cut(s) 66, 200, 315, 489, 521, 675, 749
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 361, 698
NdeII GATC 3 cut(s) 154, 175, 325
NlaIII CATG 5 cut(s) 62, 112, 184, 472, 722
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 1 cut(s) 184
PaeR7I CTCGAG 1 cut(s) 242
PagI TCATGA 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 143, 508
PkrI GCNGC 2 cut(s) 409, 694
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Psp124BI GAGCTC 2 cut(s) 80, 117
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspXI VCTCGAGB 1 cut(s) 242
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 793
RsaNI GTAC 1 cut(s) 792
SacI GAGCTC 2 cut(s) 80, 117
SaqAI TTAA 7 cut(s) 66, 200, 315, 489, 521, 675, 749
SatI GCNGC 2 cut(s) 408, 693
Sau3AI GATC 3 cut(s) 154, 175, 325
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 2 cut(s) 80, 117
SfaNI GCATC 1 cut(s) 704
Sfr274I CTCGAG 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 3 cut(s) 73, 242, 606
SmoI CTYRAG 3 cut(s) 73, 242, 606
Sse9I AATT 3 cut(s) 523, 662, 687
SsiI CCGC 2 cut(s) 353, 692
SspMI CTAG 2 cut(s) 404, 744
SstI GAGCTC 2 cut(s) 80, 117
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 273
TaqI TCGA 6 cut(s) 104, 238, 243, 513, 622, 683
TasI AATT 3 cut(s) 523, 662, 687
TatI WGTACW 1 cut(s) 791
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 2 cut(s) 143, 508
Tru1I TTAA 7 cut(s) 66, 200, 315, 489, 521, 675, 749
Tru9I TTAA 7 cut(s) 66, 200, 315, 489, 521, 675, 749
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 7 cut(s) 286, 322, 417, 431, 457, 548, 669
XapI RAATTY 1 cut(s) 662
XceI RCATGY 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 2 cut(s) 404, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.