MD10G1305200.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014684
Physical Location & Seq
Forward (+)
39151884 .. 39154599
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1305200.v1.1.491

Sequence Viewer

Length: 1077 bp
ATGGATTATGAGTTTGATCTTCAAGAACACAACTCCGATACAATCCCAGATCTCTTTGCCTCAGAAAATTATCACATGCCCTCCCAAAACTTCCTAAACAGCTCAAAACACACTGATTTCTACTTTACTTTTCGCCTCAAAGCCATTTCTCGGTTTTTACAGGTAAAGAAACGAGATGTTATATTGACACTAAAAAAATCATTCCGCATCAATCCCTTTATAATATCGTTTGTTAAAGGAGCGTATAATGACTTTTTTGGACTTCATGATGGCTTTGTGTTTCTACTAGTTCAGTATTCTTGCAGCCTTGACTCTTTCATACCTTACCTTGCCATTAACTACCTGGATCGATTCGTATCGAAGTGCGATATTCCGCAAGGAAAGCCTTGGGTCTCAAGGCTTGTGGAAGTATCTTGTCTATCTCTAGCTGCAAAGATGAAGAACACACCCTTCTCCTACTTTGATTTTCAGAGAGGGGAAGGTTTCGTCTTCGATGTGCAAACGGTTCGTAAAATGGAGCTTCTCATTCTCAACACTCTAGATTGGCGGATGAGATCGATAACTCCTTTTTCTTTTCTGCATTTCTTCTTGTCTTCGCTGGACTTAAACGATCGGCCATTTACACAAGCTCTTAGAAATCGAGCTTCGGATATCATCTTCAATGCCCATAATGAAATTAAATTTGTAGAGTTTAAGCCATCAATAATTGCAGCAGCAGCTGTCCTATCTACATGCCATGAGCTGCTCCCACCGAAGTTCCCTCCTTTTCAAGCTTCACTATCATCTTTCCAATACGTAAATAAAGAGAGTTTGATCAAATGCTTCAATTTTATGCAAGAAATGGTAGAGAATGAAAGGTTGGATACTATGTCCTGCACAAGAACCCCAGTGAGCGTTCTCGACCATCGCCTCACTATATTTCAAAGTGAGAACACCATTAGCAACGTGGCGACCACCACCACATATACTTCTGTTTCTTTGGCAGCAGAGAAGAGAGACAGCAAAAGGCGTAGATTAACTGGTACTTTCTGCAGTGAAAATATGTACAAGCTTTCTCATCATGTTCAACAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

359

Amino Acids

41.61

Weight (kDa)

8.53

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 98 - 185 7.7e-15 Cyclin, N-terminal domain
Cyclin_C PF02984 187 - 287 3.6e-11 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03720
malus_domestica MD05G1327100.v1.1 MD10G1305200.v1.1
prunus_persica Prupe.4G034400_v2.0.a1
pyrus_communis pycom10g25770
rosa_chinensis RchiOBHm_Chr5g0005771
rosa_laevigata RLG00000031325
rosa_multiflora Rmu_sc0014513.1_g000001 Rmu_sc0017047.1_g000001
rosa_roxburghii Rroxscaffold_1G00070090
rosa_rugosa Rorug04G0418000 Rorug04G0418100
rosa_samantha Rh5AG045500 Rh5BG044200 Rh5CG053000 Rh5DG044000
rosa_wichuraiana Rw5G004580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AciI CCGC 3 cut(s) 205, 374, 547
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 614
AcsI RAATTY 1 cut(s) 680
AfaI GTAC 2 cut(s) 1024, 1046
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 6 cut(s) 23, 661, 770, 826, 923, 1067
AhlI ACTAGT 1 cut(s) 286
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 2 cut(s) 842, 874
AluBI AGCT 9 cut(s) 102, 428, 520, 629, 644, 719, 742, 773, 1051
AluI AGCT 9 cut(s) 102, 428, 520, 629, 644, 719, 742, 773, 1051
Alw26I GTCTC 2 cut(s) 397, 990
AlwI GGATC 1 cut(s) 354
AlwNI CAGNNNCTG 1 cut(s) 719
AoxI GGCC 1 cut(s) 614
ApeKI GCWGC 7 cut(s) 303, 428, 710, 713, 716, 742, 983
ApoI RAATTY 1 cut(s) 680
BbsI GAAGAC 2 cut(s) 481, 585
BbvI GCAGC 7 cut(s) 315, 415, 722, 725, 728, 729, 995
BccI CCATC 3 cut(s) 263, 706, 912
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 1 cut(s) 344
BciVI GTATCC 1 cut(s) 856
BclI TGATCA 1 cut(s) 813
BcoDI GTCTC 2 cut(s) 397, 990
BcuI ACTAGT 1 cut(s) 286
BfaI CTAG 3 cut(s) 287, 425, 539
BfmI CTRYAG 1 cut(s) 1030
BfuI GTATCC 1 cut(s) 856
BglII AGATCT 1 cut(s) 49
BisI GCNGC 7 cut(s) 304, 429, 711, 714, 717, 743, 984
BlsI GCNGC 7 cut(s) 305, 430, 712, 715, 718, 744, 985
Bme1390I CCNGG 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 344
BmrI ACTGGG 1 cut(s) 881
BmsI GCATC 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 881
BpiI GAAGAC 2 cut(s) 481, 585
BpuEI CTTGAG 1 cut(s) 379
Bsa29I ATCGAT 2 cut(s) 349, 557
BsaAI YACGTR 1 cut(s) 796
BsaBI GATNNNNATC 1 cut(s) 355
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 2 cut(s) 887, 1024
Bse8I GATNNNNATC 1 cut(s) 355
BseBI CCWGG 1 cut(s) 344
BseCI ATCGAT 2 cut(s) 349, 557
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 1 cut(s) 555
BseJI GATNNNNATC 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 887, 1024
BseXI GCAGC 7 cut(s) 315, 415, 722, 725, 728, 729, 995
BsgI GTGCAG 1 cut(s) 859
Bsh1285I CGRYCG 1 cut(s) 613
BshFI GGCC 1 cut(s) 616
BshVI ATCGAT 2 cut(s) 349, 557
BsiEI CGRYCG 1 cut(s) 613
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 2 cut(s) 397, 990
BsnI GGCC 1 cut(s) 616
Bso31I GGTCTC 1 cut(s) 397
Bsp1407I TGTACA 1 cut(s) 1044
Bsp143I GATC 6 cut(s) 16, 49, 346, 554, 610, 813
BspACI CCGC 3 cut(s) 205, 374, 547
BspANI GGCC 1 cut(s) 616
BspCNI CTCAG 1 cut(s) 74
BspDI ATCGAT 2 cut(s) 349, 557
BspHI TCATGA 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 1034
BspPI GGATC 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 397
BsrGI TGTACA 1 cut(s) 1044
BsrI ACTGG 2 cut(s) 887, 1024
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 6 cut(s) 16, 49, 346, 554, 610, 813
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 2 cut(s) 505, 1071
Bst6I CTCTTC 1 cut(s) 986
BstAUI TGTACA 1 cut(s) 1044
BstBAI YACGTR 1 cut(s) 796
BstDEI CTNAG 2 cut(s) 61, 632
BstF5I GGATG 1 cut(s) 555
BstKTI GATC 6 cut(s) 19, 52, 349, 557, 613, 816
BstMAI GTCTC 2 cut(s) 397, 990
BstMBI GATC 6 cut(s) 16, 49, 346, 554, 610, 813
BstMCI CGRYCG 1 cut(s) 613
BstMWI GCNNNNNNNGC 2 cut(s) 382, 716
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 2 cut(s) 79, 735
BstSCI CCNGG 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 1030
BstSNI TACGTA 1 cut(s) 796
BstV1I GCAGC 7 cut(s) 315, 415, 722, 725, 728, 729, 995
BstV2I GAAGAC 2 cut(s) 481, 585
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu15I ATCGAT 2 cut(s) 349, 557
BsuI GTATCC 1 cut(s) 856
BsuRI GGCC 1 cut(s) 616
BsuTUI ATCGAT 2 cut(s) 349, 557
BtgZI GCGATG 1 cut(s) 890
BtsCI GGATG 1 cut(s) 555
BtsI GCAGTG 1 cut(s) 1039
BtsIMutI CAGTG 4 cut(s) 111, 894, 1039, 1076
CaiI CAGNNNCTG 1 cut(s) 719
CciI TCATGA 1 cut(s) 265
ClaI ATCGAT 2 cut(s) 349, 557
Csp6I GTAC 2 cut(s) 1023, 1045
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CviAII CATG 5 cut(s) 76, 266, 732, 737, 1061
CviQI GTAC 2 cut(s) 1023, 1045
DdeI CTNAG 2 cut(s) 61, 632
DpnI GATC 6 cut(s) 18, 51, 348, 556, 612, 815
DpnII GATC 6 cut(s) 16, 49, 346, 554, 610, 813
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 1 cut(s) 986
EarI CTCTTC 1 cut(s) 986
EciI GGCGGA 1 cut(s) 562
Eco105I TACGTA 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 386
Eco31I GGTCTC 1 cut(s) 397
Eco32I GATATC 1 cut(s) 652
EcoRII CCWGG 1 cut(s) 342
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 5 cut(s) 79, 269, 735, 740, 1064
FatI CATG 5 cut(s) 75, 265, 731, 736, 1060
FbaI TGATCA 1 cut(s) 813
Fnu4HI GCNGC 7 cut(s) 304, 429, 711, 714, 717, 743, 984
FokI GGATG 1 cut(s) 562
Fsp4HI GCNGC 7 cut(s) 304, 429, 711, 714, 717, 743, 984
FspBI CTAG 3 cut(s) 287, 425, 539
GluI GCNGC 7 cut(s) 304, 429, 711, 714, 717, 743, 984
HaeIII GGCC 1 cut(s) 616
Hin1II CATG 5 cut(s) 79, 269, 735, 740, 1064
HindIII AAGCTT 2 cut(s) 771, 1049
HinfI GANTC 2 cut(s) 311, 351
Hpy188I TCNGA 4 cut(s) 37, 64, 471, 649
Hpy188III TCNNGA 4 cut(s) 23, 266, 539, 899
HpyAV CCTTC 2 cut(s) 460, 473
HpyCH4III ACNGT 2 cut(s) 505, 1071
HpyCH4IV ACGT 2 cut(s) 795, 945
HpyCH4V TGCA 8 cut(s) 303, 431, 499, 580, 710, 835, 876, 1032
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 716
HpyF3I CTNAG 2 cut(s) 61, 632
HpySE526I ACGT 2 cut(s) 795, 945
Hsp92II CATG 5 cut(s) 79, 269, 735, 740, 1064
Ksp22I TGATCA 1 cut(s) 813
Kzo9I GATC 6 cut(s) 16, 49, 346, 554, 610, 813
LmnI GCTCC 3 cut(s) 239, 517, 750
LpnPI CCDG 8 cut(s) 60, 146, 329, 356, 584, 886, 900, 1005
Lsp1109I GCAGC 7 cut(s) 315, 415, 722, 725, 728, 729, 995
LweI GCATC 1 cut(s) 216
MaeI CTAG 3 cut(s) 287, 425, 539
MaeII ACGT 2 cut(s) 795, 945
MalI GATC 6 cut(s) 18, 51, 348, 556, 612, 815
MboI GATC 6 cut(s) 16, 49, 346, 554, 610, 813
MboII GAAGA 7 cut(s) 11, 451, 481, 577, 585, 649, 1003
MflI RGATCY 1 cut(s) 49
MluCI AATT 5 cut(s) 67, 675, 680, 705, 826
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 840
MnlI CCTC 6 cut(s) 70, 91, 146, 467, 771, 920
MseI TTAA 6 cut(s) 234, 336, 605, 678, 693, 1016
MspA1I CMGCKG 1 cut(s) 719
MspR9I CCNGG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 382, 716
NdeII GATC 6 cut(s) 16, 49, 346, 554, 610, 813
NlaIII CATG 5 cut(s) 79, 269, 735, 740, 1064
NspI RCATGY 2 cut(s) 79, 735
PagI TCATGA 1 cut(s) 265
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 7 cut(s) 305, 430, 712, 715, 718, 744, 985
Ple19I CGATCG 1 cut(s) 613
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 796
PsiI TTATAA 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PstI CTGCAG 1 cut(s) 1034
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 1 cut(s) 49
PvuI CGATCG 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 2 cut(s) 1024, 1046
RsaNI GTAC 2 cut(s) 1023, 1045
SaqAI TTAA 6 cut(s) 234, 336, 605, 678, 693, 1016
SatI GCNGC 7 cut(s) 304, 429, 711, 714, 717, 743, 984
Sau3AI GATC 6 cut(s) 16, 49, 346, 554, 610, 813
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 344
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 1030
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SnaBI TACGTA 1 cut(s) 796
SpeI ACTAGT 1 cut(s) 286
Sse9I AATT 5 cut(s) 67, 675, 680, 705, 826
SsiI CCGC 3 cut(s) 205, 374, 547
SspMI CTAG 3 cut(s) 287, 425, 539
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 505, 1071
TaiI ACGT 2 cut(s) 798, 948
TaqI TCGA 6 cut(s) 349, 359, 492, 557, 640, 900
TasI AATT 5 cut(s) 67, 675, 680, 705, 826
TatI WGTACW 1 cut(s) 1044
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 6 cut(s) 234, 336, 605, 678, 693, 1016
Tru9I TTAA 6 cut(s) 234, 336, 605, 678, 693, 1016
TscAI CASTG 4 cut(s) 118, 894, 1039, 1076
TseI GCWGC 7 cut(s) 303, 428, 710, 713, 716, 742, 983
TspDTI ATGAA 5 cut(s) 254, 307, 452, 687, 867
TspRI CASTG 4 cut(s) 118, 894, 1039, 1076
XapI RAATTY 1 cut(s) 680
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 2 cut(s) 79, 735
XcmI CCANNNNNNNNNTGG 2 cut(s) 340, 943
XspI CTAG 3 cut(s) 287, 425, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.