Rmu_sc0014513.1_g000001

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014513.1
OG0014684
Physical Location & Seq
Forward (+)
6079 .. 7861
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014513.1_g000001.1.cds

Sequence Viewer

Length: 1002 bp
atggagctctttgatgttgaagaacacaacccagattctatcccagatctatttgcctcagaaaccgatcacatgccctcacagaacttcttaaccagctccatacactcggatttctactgctcatttcgactcgaggccatttctctgtttttacaggcacagtattcctgcaaccttgaccctttcattccttaccttgccattaactacctggatcggttcatttccaagcaaaacattccgcaaggaaagccttgggtttcaagacttgttgaagtcgcctgcctgtctctagctgcaaaaatgaagaacacttcattctcattctctgattttcagagaagagaagaaggtttcatgtttgaggcgcaaacgattaacaaaatggagcttgtgattctcgacacattaaattggaggatgaaatcaataactcctttctcctttctacatttctttgtgtctttggtggacataaatgagcgaccactcactcaagccctgaaatgtcgagcttcagatgtcatcttcaatgcccataatgaaatcaaattcgttgagtttaagccatcgataattgcggcatcggcagttttgtttgcaagtcatgagctacttccattgcagtttcctagtttaatagtttcaatatcatcttgccaatatgtaaataaagagagtttgttgaaatgcttgaacctaatgcaagaaatgatagtgaatgaagggtacgactcagttttagatactctgtcatgcacaactagaactccaatgagcgtgctggaccatcgtcacttctctagctccgaaagcgaggttaatagcaccgctgccacgatcaacaccaccacagctgcggccgcagcatatgctgattctagtactattagtgtaatggtggcagagaagagagacagcaagcggcgtagattgaatggtttttgtacaagtgaaaataggtttcaggtttcttctcgtcattttcaacattgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

333

Amino Acids

37.85

Weight (kDa)

5.7

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03720
malus_domestica MD05G1327100.v1.1 MD10G1305200.v1.1
prunus_persica Prupe.4G034400_v2.0.a1
pyrus_communis pycom10g25770
rosa_chinensis RchiOBHm_Chr5g0005771
rosa_laevigata RLG00000031325
rosa_multiflora Rmu_sc0014513.1_g000001 Rmu_sc0017047.1_g000001
rosa_roxburghii Rroxscaffold_1G00070090
rosa_rugosa Rorug04G0418000 Rorug04G0418100
rosa_samantha Rh5AG045500 Rh5BG044200 Rh5CG053000 Rh5DG044000
rosa_wichuraiana Rw5G004580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 245, 584, 834, 863, 867, 928
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 3 cut(s) 734, 889, 952
AgsI TTSAA 9 cut(s) 20, 267, 278, 535, 651, 691, 700, 940, 992
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 8 cut(s) 7, 99, 299, 394, 518, 616, 810, 860
AluI AGCT 8 cut(s) 7, 99, 299, 394, 518, 616, 810, 860
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 297, 912
AlwI GGATC 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 2 cut(s) 138, 864
ApeKI GCWGC 4 cut(s) 299, 836, 860, 869
ApoI RAATTY 1 cut(s) 554
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 790
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 790
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 4 cut(s) 286, 823, 847, 881
BccI CCATC 2 cut(s) 580, 801
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 297, 912
BfaI CTAG 5 cut(s) 296, 636, 768, 807, 885
BglII AGATCT 1 cut(s) 46
BisI GCNGC 8 cut(s) 300, 585, 837, 861, 864, 867, 870, 929
BlsI GCNGC 8 cut(s) 301, 586, 838, 862, 865, 868, 871, 930
BmcAI AGTACT 1 cut(s) 889
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 790
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 790
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 596
BoxI GACNNNNGTC 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 483
Bsa29I ATCGAT 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 757, 787
Bse3DI GCAATG 1 cut(s) 623
BseBI CCWGG 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 429
BseMI GCAATG 1 cut(s) 623
BseMII CTCAG 2 cut(s) 72, 753
BseX3I CGGCCG 1 cut(s) 864
BseXI GCAGC 4 cut(s) 286, 823, 847, 881
Bsh1285I CGRYCG 1 cut(s) 867
BshFI GGCC 2 cut(s) 140, 866
BshVI ATCGAT 1 cut(s) 575
BsiEI CGRYCG 1 cut(s) 867
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 297, 912
BsnI GGCC 2 cut(s) 140, 866
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 950
Bsp143I GATC 4 cut(s) 46, 67, 217, 843
BspACI CCGC 6 cut(s) 245, 584, 834, 863, 867, 928
BspANI GGCC 2 cut(s) 140, 866
BspCNI CTCAG 2 cut(s) 71, 752
BspDI ATCGAT 1 cut(s) 575
BspHI TCATGA 1 cut(s) 610
BspPI GGATC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 623
BsrGI TGTACA 1 cut(s) 950
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 4 cut(s) 46, 67, 217, 843
BssT1I CCWWGG 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 2 cut(s) 340, 908
BstAPI GCANNNNNTGC 1 cut(s) 875
BstAUI TGTACA 1 cut(s) 950
BstC8I GCNNGC 3 cut(s) 286, 785, 926
BstDEI CTNAG 2 cut(s) 58, 739
BstF5I GGATG 1 cut(s) 429
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 4 cut(s) 49, 70, 220, 846
BstMAI GTCTC 2 cut(s) 297, 912
BstMBI GATC 4 cut(s) 46, 67, 217, 843
BstMCI CGRYCG 1 cut(s) 867
BstMWI GCNNNNNNNGC 6 cut(s) 253, 590, 816, 866, 869, 875
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 76
BstPAI GACNNNNGTC 1 cut(s) 795
BstSCI CCNGG 1 cut(s) 213
BstV1I GCAGC 4 cut(s) 286, 823, 847, 881
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BstZI CGGCCG 1 cut(s) 864
Bsu15I ATCGAT 1 cut(s) 575
BsuRI GGCC 2 cut(s) 140, 866
BsuTUI ATCGAT 1 cut(s) 575
BtsCI GGATG 1 cut(s) 429
Cac8I GCNNGC 3 cut(s) 286, 785, 926
CciI TCATGA 1 cut(s) 610
CciNI GCGGCCGC 1 cut(s) 864
CfoI GCGC 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 790
ClaI ATCGAT 1 cut(s) 575
Csp6I GTAC 3 cut(s) 733, 888, 951
CviAII CATG 4 cut(s) 73, 361, 611, 759
CviQI GTAC 3 cut(s) 733, 888, 951
DdeI CTNAG 2 cut(s) 58, 739
DpnI GATC 4 cut(s) 48, 69, 219, 845
DpnII GATC 4 cut(s) 46, 67, 217, 843
EaeI YGGCCR 1 cut(s) 864
EagI CGGCCG 1 cut(s) 864
Eam1104I CTCTTC 2 cut(s) 340, 908
EarI CTCTTC 2 cut(s) 340, 908
Ecl136II GAGCTC 1 cut(s) 7
EclXI CGGCCG 1 cut(s) 864
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 790
Eco52I CGGCCG 1 cut(s) 864
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 4 cut(s) 76, 364, 614, 762
FatI CATG 4 cut(s) 72, 360, 610, 758
FauNDI CATATG 1 cut(s) 874
Fnu4HI GCNGC 8 cut(s) 300, 585, 837, 861, 864, 867, 870, 929
FokI GGATG 1 cut(s) 436
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 8 cut(s) 300, 585, 837, 861, 864, 867, 870, 929
FspBI CTAG 5 cut(s) 296, 636, 768, 807, 885
GlaI GCGC 1 cut(s) 372
GluI GCNGC 8 cut(s) 300, 585, 837, 861, 864, 867, 870, 929
HaeIII GGCC 2 cut(s) 140, 866
HhaI GCGC 1 cut(s) 373
Hin1II CATG 4 cut(s) 76, 364, 614, 762
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HinfI GANTC 5 cut(s) 35, 132, 400, 737, 881
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 6 cut(s) 61, 112, 334, 342, 523, 814
Hpy188III TCNNGA 3 cut(s) 267, 404, 611
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 2 cut(s) 347, 722
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 6 cut(s) 174, 302, 605, 628, 709, 762
HpyF10VI GCNNNNNNNGC 6 cut(s) 253, 590, 816, 866, 869, 875
HpyF3I CTNAG 2 cut(s) 58, 739
Hsp92II CATG 4 cut(s) 76, 364, 614, 762
HspAI GCGC 1 cut(s) 371
Kzo9I GATC 4 cut(s) 46, 67, 217, 843
LmnI GCTCC 4 cut(s) 4, 104, 391, 815
Lsp1109I GCAGC 4 cut(s) 286, 823, 847, 881
LweI GCATC 1 cut(s) 596
MaeI CTAG 5 cut(s) 296, 636, 768, 807, 885
MaeIII GTNAC 1 cut(s) 797
MalI GATC 4 cut(s) 48, 69, 219, 845
MboI GATC 4 cut(s) 46, 67, 217, 843
MboII GAAGA 7 cut(s) 32, 322, 357, 362, 523, 925, 969
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 3 cut(s) 415, 554, 579
MlyI GAGTC 2 cut(s) 126, 731
MnlI CCTC 6 cut(s) 67, 88, 130, 361, 414, 814
MseI TTAA 7 cut(s) 92, 207, 381, 413, 567, 641, 825
MspA1I CMGCKG 2 cut(s) 836, 860
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 6 cut(s) 253, 590, 816, 866, 869, 875
NdeI CATATG 1 cut(s) 874
NdeII GATC 4 cut(s) 46, 67, 217, 843
NlaIII CATG 4 cut(s) 76, 364, 614, 762
NmuCI GTSAC 1 cut(s) 797
NotI GCGGCCGC 1 cut(s) 864
NspI RCATGY 1 cut(s) 76
PaeR7I CTCGAG 1 cut(s) 134
PagI TCATGA 1 cut(s) 610
PfeI GAWTC 3 cut(s) 35, 400, 881
PkrI GCNGC 8 cut(s) 301, 586, 838, 862, 865, 868, 871, 930
PleI GAGTC 2 cut(s) 126, 731
PpsI GAGTC 2 cut(s) 126, 731
PshAI GACNNNNGTC 1 cut(s) 795
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspPI GGNCC 1 cut(s) 790
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 860
RsaI GTAC 3 cut(s) 734, 889, 952
RsaNI GTAC 3 cut(s) 733, 888, 951
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 7 cut(s) 92, 207, 381, 413, 567, 641, 825
SatI GCNGC 8 cut(s) 300, 585, 837, 861, 864, 867, 870, 929
Sau3AI GATC 4 cut(s) 46, 67, 217, 843
Sau96I GGNCC 1 cut(s) 790
ScaI AGTACT 1 cut(s) 889
SchI GAGTC 2 cut(s) 126, 731
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 1 cut(s) 596
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 790
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 134, 498
SmoI CTYRAG 2 cut(s) 134, 498
Sse9I AATT 3 cut(s) 415, 554, 579
SsiI CCGC 6 cut(s) 245, 584, 834, 863, 867, 928
SspMI CTAG 5 cut(s) 296, 636, 768, 807, 885
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 165
TaqI TCGA 5 cut(s) 130, 135, 405, 514, 575
TasI AATT 3 cut(s) 415, 554, 579
TatI WGTACW 2 cut(s) 887, 950
TauI GCSGC 4 cut(s) 587, 866, 869, 931
TfiI GAWTC 3 cut(s) 35, 400, 881
Tru1I TTAA 7 cut(s) 92, 207, 381, 413, 567, 641, 825
Tru9I TTAA 7 cut(s) 92, 207, 381, 413, 567, 641, 825
TseFI GTSAC 1 cut(s) 797
TseI GCWGC 4 cut(s) 299, 836, 860, 869
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 8 cut(s) 178, 214, 309, 323, 349, 440, 561, 741
VpaK11BI GGWCC 1 cut(s) 790
XapI RAATTY 1 cut(s) 554
XceI RCATGY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 5 cut(s) 296, 636, 768, 807, 885
ZrmI AGTACT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.