MD05G1327100.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014684
Physical Location & Seq
Forward (+)
45320230 .. 45322272
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1327100.v1.1.491

Sequence Viewer

Length: 1110 bp
ATGCGAAGCTTCTCCTTTCCATCATCATTATTACTCTCTTCGAATTTCTGCTCCAACGTCCTCTCCTTGACCTCCTCATTCACTCCTCACAACCTACAAACACAAACAACTTCTTCACTAGTTCAAAACCAAATCAATCAAAAAACAGAAATGGATTATGAGTTTGATCTTCAAGAACACAACTCCGATGCAATCCCAGATCTCTTTACCTCAGAAACTGACCACATGCCCTCCCAAAACTTCCTAAGCAGCTCAAAACACACTGGTTTCTACTATACTTTTCGCCTCGAAGCCATTTCTCTGTTTTCGCAGGTTCAGTATTCTTGCAACCTTGACCCCTTCATACCTTACCTTGCCATCAACTACCTGGATCGGTTCATATCGAAGCGGGATATTCCGCAAGGAAAGCCTTGGGTCTCAAGACTCGTGAAAGTATCTTGTCTATCTCTAGCTGCAAAGATGAAGAACATACCCTTCTCCTCCTCTGATTTTCAGAGAGGGGAAAGTTTCGTCTTCGATGTGCAAACGGTTCATAAAATGGAGCTTCTTATTCTCAACACTCTGGATTGGCGGATGAGATCGATAACTCCTTTCTCTTTTCTGCATTTCTTCTTGTCTTCGCTGGACTTAAACGACCGGCCATTTACACAAGCTCTCAAAAATCGAGCTTCGGATATCATCTTCAATGCCCATACTGAAATTAAATTTGTAGAGTTTAAGCCATCAATAATTGCAGCATCAGCTGTTCTATCTGCATGCCATGAACTGCTCCCATTGAAGTTCCCTTTTTTCAAAGTTTCCCTATCATCTTTCCAAAATGTAAATAAAGAGAGTTTGCTCAAATGCTTCAATGTTATGCAAGAAATGGTAGAGAATGAAGGGTTGGATACTATGTCCTGCACAAGAACCCCAGCGAGCGTTCTGGACCGGCGCCTCACTAGATCGGAAGGTGAAAAGACCATCAGCACCGCCGCCACCAGCACCAGCACCACCAAATATACTTGTGTTTCTGTGGCAGCAGAGAAGAGACACAGCAAAAGGCGTAGATTAAATGGTACTTTCTGCAGTGAAAATATGTTCAAGCTTTCTCATCATATTCGAAAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

370

Amino Acids

42.17

Weight (kDa)

8.79

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 68 - 193 1.2e-20 Cyclin, N-terminal domain
Cyclin_C PF02984 195 - 294 4.3e-11 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03720
malus_domestica MD05G1327100.v1.1 MD10G1305200.v1.1
prunus_persica Prupe.4G034400_v2.0.a1
pyrus_communis pycom10g25770
rosa_chinensis RchiOBHm_Chr5g0005771
rosa_laevigata RLG00000031325
rosa_multiflora Rmu_sc0014513.1_g000001 Rmu_sc0017047.1_g000001
rosa_roxburghii Rroxscaffold_1G00070090
rosa_rugosa Rorug04G0418000 Rorug04G0418100
rosa_samantha Rh5AG045500 Rh5BG044200 Rh5CG053000 Rh5DG044000
rosa_wichuraiana Rw5G004580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 930
AciI CCGC 5 cut(s) 388, 398, 571, 969, 972
AclWI GGATC 1 cut(s) 378
AcoI YGGCCR 1 cut(s) 638
AcsI RAATTY 2 cut(s) 43, 704
AcyI GRCGYC 1 cut(s) 931
AfaI GTAC 1 cut(s) 1057
AgsI TTSAA 7 cut(s) 125, 173, 685, 778, 793, 850, 1081
AhlI ACTAGT 1 cut(s) 118
AjnI CCWGG 1 cut(s) 366
AjuI GAANNNNNNNTTGG 2 cut(s) 866, 898
AluBI AGCT 8 cut(s) 9, 252, 452, 544, 653, 668, 743, 1084
AluI AGCT 8 cut(s) 9, 252, 452, 544, 653, 668, 743, 1084
Alw26I GTCTC 2 cut(s) 421, 1021
AlwI GGATC 1 cut(s) 378
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 638
ApeKI GCWGC 4 cut(s) 249, 452, 734, 1016
ApoI RAATTY 2 cut(s) 43, 704
AspLEI GCGC 1 cut(s) 933
AspS9I GGNCC 1 cut(s) 925
AsuHPI GGTGA 1 cut(s) 962
AsuII TTCGAA 2 cut(s) 41, 1099
AvaII GGWCC 1 cut(s) 925
BanI GGYRCC 1 cut(s) 930
BauI CACGAG 1 cut(s) 425
BbsI GAAGAC 2 cut(s) 505, 609
BbvI GCAGC 4 cut(s) 261, 439, 746, 1028
BccI CCATC 4 cut(s) 28, 365, 730, 968
BciT130I CCWGG 1 cut(s) 368
BciVI GTATCC 1 cut(s) 880
BcoDI GTCTC 2 cut(s) 421, 1021
BcuI ACTAGT 1 cut(s) 118
BfaI CTAG 3 cut(s) 119, 449, 939
BfmI CTRYAG 1 cut(s) 1063
BfoI RGCGCY 1 cut(s) 934
BfuAI ACCTGC 1 cut(s) 301
BfuI GTATCC 1 cut(s) 880
BglII AGATCT 1 cut(s) 199
BisI GCNGC 5 cut(s) 250, 453, 735, 972, 1017
BlsI GCNGC 5 cut(s) 251, 454, 736, 973, 1018
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 925
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 1 cut(s) 932
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 178, 746
BpiI GAAGAC 2 cut(s) 505, 609
Bpu10I CCTNAGC 1 cut(s) 245
Bpu14I TTCGAA 2 cut(s) 41, 1099
BpuEI CTTGAG 1 cut(s) 403
Bsa29I ATCGAT 1 cut(s) 581
BsaHI GRCGYC 1 cut(s) 931
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 410
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 215, 245
Bse118I RCCGGY 2 cut(s) 636, 927
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 368
BseCI ATCGAT 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 4 cut(s) 64, 75, 469, 472
BseXI GCAGC 4 cut(s) 261, 439, 746, 1028
BseYI CCCAGC 1 cut(s) 910
BsgI GTGCAG 1 cut(s) 883
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 1 cut(s) 640
BshNI GGYRCC 1 cut(s) 930
BshVI ATCGAT 1 cut(s) 581
BsiEI CGRYCG 1 cut(s) 637
BsiSI CCGG 2 cut(s) 637, 928
BsmAI GTCTC 2 cut(s) 421, 1021
BsnI GGCC 1 cut(s) 640
Bso31I GGTCTC 1 cut(s) 421
Bsp119I TTCGAA 2 cut(s) 41, 1099
Bsp143I GATC 5 cut(s) 166, 199, 370, 578, 941
BspACI CCGC 5 cut(s) 388, 398, 571, 969, 972
BspANI GGCC 1 cut(s) 640
BspCNI CTCAG 1 cut(s) 224
BspDI ATCGAT 1 cut(s) 581
BspLI GGNNCC 1 cut(s) 932
BspMAI CTGCAG 1 cut(s) 1067
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 1 cut(s) 378
BspT104I TTCGAA 2 cut(s) 41, 1099
BspT107I GGYRCC 1 cut(s) 930
BspTNI GGTCTC 1 cut(s) 421
BsrFI RCCGGY 2 cut(s) 636, 927
BsrI ACTGG 1 cut(s) 268
BssAI RCCGGY 2 cut(s) 636, 927
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 5 cut(s) 166, 199, 370, 578, 941
BssNI GRCGYC 1 cut(s) 931
BssSI CACGAG 1 cut(s) 425
BssT1I CCWWGG 1 cut(s) 410
Bst2BI CACGAG 1 cut(s) 425
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 2 cut(s) 43, 1019
BstACI GRCGYC 1 cut(s) 931
BstBI TTCGAA 2 cut(s) 41, 1099
BstC8I GCNNGC 2 cut(s) 757, 916
BstDEI CTNAG 2 cut(s) 211, 245
BstF5I GGATG 1 cut(s) 579
BstH2I RGCGCY 1 cut(s) 934
BstHHI GCGC 1 cut(s) 933
BstKTI GATC 5 cut(s) 169, 202, 373, 581, 944
BstMAI GTCTC 2 cut(s) 421, 1021
BstMBI GATC 5 cut(s) 166, 199, 370, 578, 941
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 2 cut(s) 406, 740
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 2 cut(s) 229, 759
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 1063
BstV1I GCAGC 4 cut(s) 261, 439, 746, 1028
BstV2I GAAGAC 2 cut(s) 505, 609
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 581
BsuI GTATCC 1 cut(s) 880
BsuRI GGCC 1 cut(s) 640
BsuTUI ATCGAT 1 cut(s) 581
BtsCI GGATG 1 cut(s) 579
BtsI GCAGTG 1 cut(s) 1072
BtsIMutI CAGTG 2 cut(s) 261, 1072
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 2 cut(s) 757, 916
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 933
Cfr10I RCCGGY 2 cut(s) 636, 927
Cfr13I GGNCC 1 cut(s) 925
ClaI ATCGAT 1 cut(s) 581
Csp6I GTAC 1 cut(s) 1056
CviAII CATG 3 cut(s) 226, 756, 761
CviQI GTAC 1 cut(s) 1056
DdeI CTNAG 2 cut(s) 211, 245
DinI GGCGCC 1 cut(s) 932
DpnI GATC 5 cut(s) 168, 201, 372, 580, 943
DpnII GATC 5 cut(s) 166, 199, 370, 578, 941
EaeI YGGCCR 1 cut(s) 638
Eam1104I CTCTTC 2 cut(s) 43, 1019
EarI CTCTTC 2 cut(s) 43, 1019
EciI GGCGGA 1 cut(s) 586
Eco130I CCWWGG 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 676
Eco47I GGWCC 1 cut(s) 925
EcoRII CCWGG 1 cut(s) 366
EcoRV GATATC 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 410
EgeI GGCGCC 1 cut(s) 932
EheI GGCGCC 1 cut(s) 932
ErhI CCWWGG 1 cut(s) 410
FaeI CATG 3 cut(s) 229, 759, 764
FatI CATG 3 cut(s) 225, 755, 760
FauI CCCGC 1 cut(s) 381
Fnu4HI GCNGC 5 cut(s) 250, 453, 735, 972, 1017
FokI GGATG 1 cut(s) 586
Fsp4HI GCNGC 5 cut(s) 250, 453, 735, 972, 1017
FspBI CTAG 3 cut(s) 119, 449, 939
GlaI GCGC 1 cut(s) 932
GluI GCNGC 5 cut(s) 250, 453, 735, 972, 1017
GsaI CCCAGC 1 cut(s) 914
HaeII RGCGCY 1 cut(s) 934
HaeIII GGCC 1 cut(s) 640
HapII CCGG 2 cut(s) 637, 928
HhaI GCGC 1 cut(s) 933
Hin1I GRCGYC 1 cut(s) 931
Hin1II CATG 3 cut(s) 229, 759, 764
Hin6I GCGC 1 cut(s) 931
HinP1I GCGC 1 cut(s) 931
HindIII AAGCTT 2 cut(s) 7, 1082
HinfI GANTC 1 cut(s) 423
HpaII CCGG 2 cut(s) 637, 928
HphI GGTGA 1 cut(s) 962
Hpy188I TCNGA 6 cut(s) 187, 214, 487, 495, 673, 946
Hpy188III TCNNGA 5 cut(s) 173, 420, 427, 563, 923
HpyAV CCTTC 4 cut(s) 349, 484, 872, 941
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 406, 740
HpyF3I CTNAG 2 cut(s) 211, 245
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 931
Hsp92II CATG 3 cut(s) 229, 759, 764
HspAI GCGC 1 cut(s) 931
KasI GGCGCC 1 cut(s) 930
Kzo9I GATC 5 cut(s) 166, 199, 370, 578, 941
LmnI GCTCC 3 cut(s) 56, 541, 774
Lsp1109I GCAGC 4 cut(s) 261, 439, 746, 1028
LweI GCATC 2 cut(s) 178, 746
MaeI CTAG 3 cut(s) 119, 449, 939
MaeII ACGT 1 cut(s) 57
MalI GATC 5 cut(s) 168, 201, 372, 580, 943
MboI GATC 5 cut(s) 166, 199, 370, 578, 941
MboII GAAGA 9 cut(s) 30, 105, 161, 475, 505, 601, 609, 673, 1036
MflI RGATCY 1 cut(s) 199
MluCI AATT 4 cut(s) 43, 699, 704, 729
Mly113I GGCGCC 1 cut(s) 931
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 2 cut(s) 78, 864
MseI TTAA 4 cut(s) 629, 702, 717, 1049
MspA1I CMGCKG 1 cut(s) 743
MspI CCGG 2 cut(s) 637, 928
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 406, 740
NarI GGCGCC 1 cut(s) 931
NdeII GATC 5 cut(s) 166, 199, 370, 578, 941
NlaIII CATG 3 cut(s) 229, 759, 764
NlaIV GGNNCC 1 cut(s) 932
NspI RCATGY 2 cut(s) 229, 759
NspV TTCGAA 2 cut(s) 41, 1099
PaeI GCATGC 1 cut(s) 759
PkrI GCNGC 5 cut(s) 251, 454, 736, 973, 1018
PleI GAGTC 1 cut(s) 417
PluTI GGCGCC 1 cut(s) 934
PpsI GAGTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 910
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 932
PspPI GGNCC 1 cut(s) 925
PstI CTGCAG 1 cut(s) 1067
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 1 cut(s) 1057
RsaNI GTAC 1 cut(s) 1056
SaqAI TTAA 4 cut(s) 629, 702, 717, 1049
SatI GCNGC 5 cut(s) 250, 453, 735, 972, 1017
Sau3AI GATC 5 cut(s) 166, 199, 370, 578, 941
Sau96I GGNCC 1 cut(s) 925
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 1 cut(s) 368
SfaNI GCATC 2 cut(s) 178, 746
SfcI CTRYAG 1 cut(s) 1063
SfoI GGCGCC 1 cut(s) 932
SfuI TTCGAA 2 cut(s) 41, 1099
SinI GGWCC 1 cut(s) 925
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
SpeI ACTAGT 1 cut(s) 118
SphI GCATGC 1 cut(s) 759
Sse9I AATT 4 cut(s) 43, 699, 704, 729
SsiI CCGC 5 cut(s) 388, 398, 571, 969, 972
SspDI GGCGCC 1 cut(s) 930
SspMI CTAG 3 cut(s) 119, 449, 939
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 60
TaqI TCGA 7 cut(s) 41, 288, 383, 516, 581, 664, 1099
TasI AATT 4 cut(s) 43, 699, 704, 729
TauI GCSGC 1 cut(s) 974
Tru1I TTAA 4 cut(s) 629, 702, 717, 1049
Tru9I TTAA 4 cut(s) 629, 702, 717, 1049
TscAI CASTG 2 cut(s) 268, 1072
TseI GCWGC 4 cut(s) 249, 452, 734, 1016
TspDTI ATGAA 6 cut(s) 331, 367, 476, 521, 777, 891
TspRI CASTG 2 cut(s) 268, 1072
VpaK11BI GGWCC 1 cut(s) 925
XapI RAATTY 2 cut(s) 43, 704
XceI RCATGY 2 cut(s) 229, 759
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XspI CTAG 3 cut(s) 119, 449, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.