Prupe.4G034400_v2.0.a1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014684
Physical Location & Seq
Reverse (-)
1601221 .. 1603271
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G034400.1

Sequence Viewer

Length: 1101 bp
ATGCGAAGCTTCTCTTTTCCATCATTGTTATTACTCTCTTCAAACTGCTGCTCCAATGTCCTCTCCTTGACCGCCTCTGTTTCTACTCAGACTTCACAAACGACTTCACTTGAAACACAAAACCAAGCAAAGAAAATGGATGAGTTTGGTCTTCAAGAGCCACACTCTTTAGCAAGCTTCCAAGAACACAACCTTGATACAATCCCAGATCTCTTTGCCTCAGAATCTGACCACATGCCCTCACACAATTCCTTAAGCTGCTCAAAGGACTCAGATTTCTACTATGCATTTCGCCTCGAAGCCATTTCTCTGTTTTTACAGGCACAATATTCTTGCAACCTTGACCCTTTCATACCATACCTTGCTATTAACTACCTGGATCGGTTCTTATCCAAGCGAGATATTCCGGAAGGAAAGCCTTGGGTCTCAAGACTCCTTGAAGTCTCCTGTCTATCTCTAGCTGCAAAGATGAAGAACACACCCTTCTCCGCCACTGATTTTCAGAGAGGGGAAGGCTTCATCTTTGATGCGCAGACAATTCATAAAATGGAGCTTCTCATTCTTGACACTCTAGATTGGCGGATGAGATCGATAACACCCTTTTCTTTTCTGTCTTTCTTTCTCTCTTTTCTGGACTTAAATGATCAAACACTTACAAAAGCTCTCAAAAGTCGAGCTTCTGACGTCATCTTCAATGCCCATAATGAAATCAAGATTGTTGAGTTCAAACCATCGATAATTGCAGCATCAGCGGCCCTATCTGCATGTCAAGAGCTGCTCCCACTGCAGTTTCCATCTTTTAAAGCTTCAATATCATCTTTCCAATATGTAAATAAAGAGAGTTTGTTCAAATGCTTGACTTTGGTGCAAGAAATGATGGTGAATGAAGGGTACGAGTCCATGTTAGAAACTTTGTCATGCACAACAAGAACCGCAATGAGTGTGGTGGACCGTCAGCTCACCAAATCAGATCAAAGCCAGAACACATATACTTCTTCTACTATTATAGCAGAGAAGAGAGACAGCAAGCGGCGCAGATTGAATGGTACTTTGTGCAGTGAAAATAGGTTCCGGCTCTCCCATCATTTTCAAAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

367

Amino Acids

41.56

Weight (kDa)

6.26

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03720
malus_domestica MD05G1327100.v1.1 MD10G1305200.v1.1
prunus_persica Prupe.4G034400_v2.0.a1
pyrus_communis pycom10g25770
rosa_chinensis RchiOBHm_Chr5g0005771
rosa_laevigata RLG00000031325
rosa_multiflora Rmu_sc0014513.1_g000001 Rmu_sc0017047.1_g000001
rosa_roxburghii Rroxscaffold_1G00070090
rosa_rugosa Rorug04G0418000 Rorug04G0418100
rosa_samantha Rh5AG045500 Rh5BG044200 Rh5CG053000 Rh5DG044000
rosa_wichuraiana Rw5G004580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 687
Acc16I TGCGCA 1 cut(s) 531
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 6 cut(s) 72, 489, 580, 752, 933, 1030
AclWI GGATC 1 cut(s) 387
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 2 cut(s) 893, 1048
AflII CTTAAG 1 cut(s) 253
AjnI CCWGG 1 cut(s) 375
Alw26I GTCTC 3 cut(s) 430, 448, 1014
AlwI GGATC 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 1 cut(s) 753
ApeKI GCWGC 5 cut(s) 48, 258, 461, 743, 775
AspLEI GCGC 2 cut(s) 532, 1035
AspS9I GGNCC 2 cut(s) 754, 949
AsuHPI GGTGA 2 cut(s) 892, 952
AvaII GGWCC 1 cut(s) 949
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 5 cut(s) 35, 245, 448, 755, 762
BccI CCATC 5 cut(s) 28, 739, 802, 871, 1089
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 1 cut(s) 643
BcoDI GTCTC 3 cut(s) 430, 448, 1014
BfaI CTAG 2 cut(s) 458, 572
BfmI CTRYAG 1 cut(s) 785
BfrI CTTAAG 1 cut(s) 253
BglII AGATCT 1 cut(s) 208
BisI GCNGC 7 cut(s) 49, 259, 462, 744, 753, 776, 1031
BlsI GCNGC 7 cut(s) 50, 260, 463, 745, 754, 777, 1032
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 949
BmgT120I GGNCC 2 cut(s) 754, 949
BmiI GGNNCC 1 cut(s) 1070
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 2 cut(s) 517, 755
BpiI GAAGAC 1 cut(s) 143
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpuEI CTTGAG 1 cut(s) 412
Bsa29I ATCGAT 2 cut(s) 590, 734
BsaHI GRCGYC 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 419
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse3DI GCAATG 1 cut(s) 942
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 1 cut(s) 377
BseCI ATCGAT 2 cut(s) 590, 734
BseDI CCNNGG 1 cut(s) 419
BseGI GGATG 2 cut(s) 145, 588
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 3 cut(s) 101, 234, 285
BseXI GCAGC 5 cut(s) 35, 245, 448, 755, 762
BsgI GTGCAG 1 cut(s) 1075
BshFI GGCC 1 cut(s) 755
BshVI ATCGAT 2 cut(s) 590, 734
BsiSI CCGG 2 cut(s) 407, 1072
BsmAI GTCTC 3 cut(s) 430, 448, 1014
BsnI GGCC 1 cut(s) 755
Bso31I GGTCTC 1 cut(s) 430
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 5 cut(s) 208, 379, 587, 643, 970
BspACI CCGC 6 cut(s) 72, 489, 580, 752, 933, 1030
BspANI GGCC 1 cut(s) 755
BspCNI CTCAG 3 cut(s) 100, 233, 284
BspDI ATCGAT 2 cut(s) 590, 734
BspEI TCCGGA 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 1070
BspMAI CTGCAG 1 cut(s) 789
BspPI GGATC 1 cut(s) 387
BspTI CTTAAG 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 942
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 5 cut(s) 208, 379, 587, 643, 970
BssNI GRCGYC 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 953
Bst6I CTCTTC 2 cut(s) 43, 1010
BstACI GRCGYC 1 cut(s) 684
BstAFI CTTAAG 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 175, 1028
BstDEI CTNAG 3 cut(s) 87, 220, 271
BstF5I GGATG 2 cut(s) 145, 588
BstHHI GCGC 2 cut(s) 532, 1035
BstKTI GATC 5 cut(s) 211, 382, 590, 646, 973
BstMAI GTCTC 3 cut(s) 430, 448, 1014
BstMBI GATC 5 cut(s) 208, 379, 587, 643, 970
BstMWI GCNNNNNNNGC 5 cut(s) 749, 752, 761, 784, 1032
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 2 cut(s) 238, 768
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 785
BstV1I GCAGC 5 cut(s) 35, 245, 448, 755, 762
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
Bsu15I ATCGAT 2 cut(s) 590, 734
BsuRI GGCC 1 cut(s) 755
BsuTUI ATCGAT 2 cut(s) 590, 734
BtsCI GGATG 2 cut(s) 145, 588
BtsI GCAGTG 2 cut(s) 782, 1063
BtsIMutI CAGTG 3 cut(s) 492, 782, 1063
Cac8I GCNNGC 2 cut(s) 175, 1028
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 2 cut(s) 532, 1035
Cfr13I GGNCC 2 cut(s) 754, 949
ClaI ATCGAT 2 cut(s) 590, 734
Csp6I GTAC 2 cut(s) 892, 1047
CspCI CAANNNNNGTGG 2 cut(s) 924, 959
CviAII CATG 4 cut(s) 235, 765, 901, 918
CviQI GTAC 2 cut(s) 892, 1047
DdeI CTNAG 3 cut(s) 87, 220, 271
DpnI GATC 5 cut(s) 210, 381, 589, 645, 972
DpnII GATC 5 cut(s) 208, 379, 587, 643, 970
DraI TTTAAA 1 cut(s) 802
Eam1104I CTCTTC 2 cut(s) 43, 1010
EarI CTCTTC 2 cut(s) 43, 1010
EciI GGCGGA 2 cut(s) 478, 595
Eco130I CCWWGG 1 cut(s) 419
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 949
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 4 cut(s) 238, 768, 904, 921
FalI AAGNNNNNCTT 3 cut(s) 30, 661, 693
FatI CATG 4 cut(s) 234, 764, 900, 917
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 7 cut(s) 49, 259, 462, 744, 753, 776, 1031
FokI GGATG 2 cut(s) 152, 595
Fsp4HI GCNGC 7 cut(s) 49, 259, 462, 744, 753, 776, 1031
FspBI CTAG 2 cut(s) 458, 572
FspI TGCGCA 1 cut(s) 531
GlaI GCGC 2 cut(s) 531, 1034
GluI GCNGC 7 cut(s) 49, 259, 462, 744, 753, 776, 1031
HaeIII GGCC 1 cut(s) 755
HapII CCGG 2 cut(s) 407, 1072
HhaI GCGC 2 cut(s) 532, 1035
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 4 cut(s) 238, 768, 904, 921
Hin6I GCGC 2 cut(s) 530, 1033
HinP1I GCGC 2 cut(s) 530, 1033
HindIII AAGCTT 3 cut(s) 7, 175, 804
HinfI GANTC 4 cut(s) 224, 269, 432, 896
HpaII CCGG 2 cut(s) 407, 1072
HphI GGTGA 2 cut(s) 892, 952
Hpy166II GTNNAC 1 cut(s) 949
Hpy188I TCNGA 7 cut(s) 90, 223, 229, 274, 504, 682, 970
Hpy188III TCNNGA 8 cut(s) 155, 407, 429, 563, 572, 632, 712, 770
Hpy8I GTNNAC 1 cut(s) 949
HpyAV CCTTC 4 cut(s) 404, 493, 506, 881
HpyCH4III ACNGT 1 cut(s) 953
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 9 cut(s) 287, 336, 464, 743, 764, 787, 868, 921, 1056
HpyF10VI GCNNNNNNNGC 5 cut(s) 749, 752, 761, 784, 1032
HpyF3I CTNAG 3 cut(s) 87, 220, 271
HpySE526I ACGT 1 cut(s) 684
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 4 cut(s) 238, 768, 904, 921
HspAI GCGC 2 cut(s) 530, 1033
Kpn2I TCCGGA 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 5 cut(s) 208, 379, 587, 643, 970
LmnI GCTCC 3 cut(s) 56, 550, 783
LpnPI CCDG 9 cut(s) 219, 305, 362, 389, 420, 460, 617, 992, 1085
Lsp1109I GCAGC 5 cut(s) 35, 245, 448, 755, 762
LweI GCATC 2 cut(s) 517, 755
MaeI CTAG 2 cut(s) 458, 572
MaeII ACGT 1 cut(s) 684
MalI GATC 5 cut(s) 210, 381, 589, 645, 972
MboI GATC 5 cut(s) 208, 379, 587, 643, 970
MboII GAAGA 6 cut(s) 30, 143, 484, 682, 987, 1027
MflI RGATCY 1 cut(s) 208
MluCI AATT 3 cut(s) 247, 537, 738
MlyI GAGTC 3 cut(s) 263, 426, 905
MnlI CCTC 6 cut(s) 71, 85, 229, 250, 305, 500
Mph1103I ATGCAT 1 cut(s) 289
MroI TCCGGA 1 cut(s) 406
MseI TTAA 4 cut(s) 254, 369, 638, 801
MspA1I CMGCKG 1 cut(s) 752
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 2 cut(s) 407, 1072
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 5 cut(s) 749, 752, 761, 784, 1032
NdeII GATC 5 cut(s) 208, 379, 587, 643, 970
NlaIII CATG 4 cut(s) 238, 768, 904, 921
NlaIV GGNNCC 1 cut(s) 1070
NsbI TGCGCA 1 cut(s) 531
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 2 cut(s) 238, 768
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 7 cut(s) 50, 260, 463, 745, 754, 777, 1032
PleI GAGTC 3 cut(s) 263, 426, 904
PpsI GAGTC 3 cut(s) 263, 426, 904
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 1070
PspPI GGNCC 2 cut(s) 754, 949
PstI CTGCAG 1 cut(s) 789
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 2 cut(s) 893, 1048
RsaNI GTAC 2 cut(s) 892, 1047
SaqAI TTAA 4 cut(s) 254, 369, 638, 801
SatI GCNGC 7 cut(s) 49, 259, 462, 744, 753, 776, 1031
Sau3AI GATC 5 cut(s) 208, 379, 587, 643, 970
Sau96I GGNCC 2 cut(s) 754, 949
SchI GAGTC 3 cut(s) 263, 426, 905
ScrFI CCNGG 1 cut(s) 377
SfaNI GCATC 2 cut(s) 517, 755
SfcI CTRYAG 1 cut(s) 785
SinI GGWCC 1 cut(s) 949
SmlI CTYRAG 2 cut(s) 253, 427
SmoI CTYRAG 2 cut(s) 253, 427
Sse9I AATT 3 cut(s) 247, 537, 738
SsiI CCGC 6 cut(s) 72, 489, 580, 752, 933, 1030
SspI AATATT 1 cut(s) 329
SspMI CTAG 2 cut(s) 458, 572
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 1 cut(s) 953
TaiI ACGT 1 cut(s) 687
TaqI TCGA 4 cut(s) 297, 590, 673, 734
TasI AATT 3 cut(s) 247, 537, 738
TauI GCSGC 2 cut(s) 755, 1033
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 4 cut(s) 254, 369, 638, 801
Tru9I TTAA 4 cut(s) 254, 369, 638, 801
TscAI CASTG 3 cut(s) 499, 789, 1063
TseI GCWGC 5 cut(s) 48, 258, 461, 743, 775
TspDTI ATGAA 6 cut(s) 340, 485, 508, 530, 720, 900
TspRI CASTG 3 cut(s) 499, 789, 1063
Vha464I CTTAAG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 949
XbaI TCTAGA 1 cut(s) 571
XceI RCATGY 2 cut(s) 238, 768
XspI CTAG 2 cut(s) 458, 572
ZraI GACGTC 1 cut(s) 685
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.