RchiOBHm_Chr5g0005771

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014684
Physical Location & Seq
Reverse (-)
3653824 .. 3656101
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28696

Sequence Viewer

Length: 1104 bp
ATGCGAAGCTTCTCTTTCCCATCATTATTACTCTCTTCCTCTAACAACTTTTGCTCCCATGTCCTTAACTCCTTGAGCTCCTCATCAATCACTCAAAACAAGTCGAACATGGAGCTCTTTGATCTTGAAGAACACAACCCAGATTCTATCCCAGATCTATTTGCCTCAGAAACCGATCACATGCCCTCACAGAACTTCTTAACCAGCTCCATACACTCGGATTTCTACTGCTCATTTCGACTCGAGGCCATTTCTCTGTTTTTACAGGCACAGTATTCCTCCAACCTTGACCCTTTCATTCCTTACCTTGCCATTGACTACATGGATCGGTTCATTTCCAAGCAAAACATTCCGCAAGGAAAGCCTTGGGTTTCAAGACTTGTTGAAGTCGCCTGCCTGTCTCTAGCTGCAAAAATGAAGAACACTTCATTCTCATTCTCTGATTTTCAGAGAAGAGAAGAAGGTTTCATGTTTGAGGCGCAAACGATTAACAAAATGGAGCTTGTGATTCTCGACACTTTAAATTGGAGGATGAGATCAATAACTCCTTTCTCCTTTCTACATTTCTTTGTCTCTTTGGTGGACATAAATGAGCGACCACTCACTCAAGCCCTCAAAAGTCGAGCTTCAGATGTCATCTTCAATGCCCATAATGAAATCAAATTCGTTGAGTTTAAGCCATCGGTAATTGCGGCATCGGCGGTTTTGTTTGCGAGTCATGAGCTACTCCCATTGCAGTTTCCTAGTTTAAAAGTTTCAATATCATCTTGCCAATATGTAAATAAAGAGAGTTTGTTGAAATGCTTGAACCTAATGCAAGAAATGATAGTGAATGAAGGGTACGACTCAGTTTTAGATACTCTGTCATGCACAACTAGAACTCCAATGAGCGTGCTGGACCATCGTTACTTCTCTAGCTCCGAAAGCGAGGTTAATAGCACCGGTGCCACCACCACCACCGCTGCGGCCGCAGCATATGCTGATTCTAGTACTAGTAGTGTAATGGTGGCAGAGAAGAGAGACAGCAAGCGGCGTAGATTGAATGGTTTTTGTACAAGTGAAAATAGGTTTCAGGTTTCTTCTCATCATTTTCAACATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

367

Amino Acids

41.52

Weight (kDa)

5.89

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 54 - 179 1.1e-20 Cyclin, N-terminal domain
Cyclin_C PF02984 181 - 279 1.1e-09 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03720
malus_domestica MD05G1327100.v1.1 MD10G1305200.v1.1
prunus_persica Prupe.4G034400_v2.0.a1
pyrus_communis pycom10g25770
rosa_chinensis RchiOBHm_Chr5g0005771
rosa_laevigata RLG00000031325
rosa_multiflora Rmu_sc0014513.1_g000001 Rmu_sc0017047.1_g000001
rosa_roxburghii Rroxscaffold_1G00070090
rosa_rugosa Rorug04G0418000 Rorug04G0418100
rosa_samantha Rh5AG045500 Rh5BG044200 Rh5CG053000 Rh5DG044000
rosa_wichuraiana Rw5G004580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 944
AciI CCGC 7 cut(s) 353, 692, 701, 960, 965, 969, 1030
AclWI GGATC 1 cut(s) 333
AcoI YGGCCR 1 cut(s) 966
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 3 cut(s) 842, 991, 1054
AgeI ACCGGT 1 cut(s) 941
AgsI TTSAA 9 cut(s) 128, 375, 386, 643, 759, 799, 808, 1042, 1094
AhlI ACTAGT 1 cut(s) 992
AluBI AGCT 9 cut(s) 9, 78, 115, 207, 407, 502, 626, 724, 918
AluI AGCT 9 cut(s) 9, 78, 115, 207, 407, 502, 626, 724, 918
Alw21I GWGCWC 2 cut(s) 80, 117
Alw26I GTCTC 3 cut(s) 405, 577, 1014
AlwI GGATC 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 2 cut(s) 246, 966
ApeKI GCWGC 3 cut(s) 407, 962, 971
ApoI RAATTY 1 cut(s) 662
AsiGI ACCGGT 1 cut(s) 941
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 1 cut(s) 898
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 898
BanI GGYRCC 1 cut(s) 944
BanII GRGCYC 2 cut(s) 80, 117
Bbv12I GWGCWC 2 cut(s) 80, 117
BbvI GCAGC 3 cut(s) 394, 949, 983
BccI CCATC 3 cut(s) 28, 688, 909
BcoDI GTCTC 3 cut(s) 405, 577, 1014
BcuI ACTAGT 1 cut(s) 992
BfaI CTAG 6 cut(s) 404, 744, 876, 915, 987, 993
BglII AGATCT 1 cut(s) 154
BisI GCNGC 7 cut(s) 408, 693, 963, 966, 969, 972, 1031
BlsI GCNGC 7 cut(s) 409, 694, 964, 967, 970, 973, 1032
BmcAI AGTACT 1 cut(s) 991
Bme18I GGWCC 1 cut(s) 898
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 1 cut(s) 946
BmsI GCATC 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 94, 591
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 1 cut(s) 941
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 865, 895
Bse118I RCCGGY 1 cut(s) 941
Bse3DI GCAATG 1 cut(s) 731
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 537
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 2 cut(s) 180, 861
BseRI GAGGAG 1 cut(s) 70
BseX3I CGGCCG 1 cut(s) 966
BseXI GCAGC 3 cut(s) 394, 949, 983
Bsh1285I CGRYCG 1 cut(s) 969
BshFI GGCC 2 cut(s) 248, 968
BshNI GGYRCC 1 cut(s) 944
BshTI ACCGGT 1 cut(s) 941
BsiEI CGRYCG 1 cut(s) 969
BsiHKAI GWGCWC 2 cut(s) 80, 117
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 942
BsmAI GTCTC 3 cut(s) 405, 577, 1014
BsnI GGCC 2 cut(s) 248, 968
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 80, 117
Bsp1407I TGTACA 1 cut(s) 1052
Bsp143I GATC 5 cut(s) 121, 154, 175, 325, 536
BspACI CCGC 7 cut(s) 353, 692, 701, 960, 965, 969, 1030
BspANI GGCC 2 cut(s) 248, 968
BspCNI CTCAG 2 cut(s) 179, 860
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 1 cut(s) 946
BspPI GGATC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 944
BsrDI GCAATG 1 cut(s) 731
BsrFI RCCGGY 1 cut(s) 941
BsrGI TGTACA 1 cut(s) 1052
BssAI RCCGGY 1 cut(s) 941
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 5 cut(s) 121, 154, 175, 325, 536
BssT1I CCWWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 3 cut(s) 40, 448, 1010
BstAPI GCANNNNNTGC 1 cut(s) 977
BstAUI TGTACA 1 cut(s) 1052
BstC8I GCNNGC 3 cut(s) 394, 893, 1028
BstDEI CTNAG 2 cut(s) 166, 847
BstF5I GGATG 1 cut(s) 537
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 5 cut(s) 124, 157, 178, 328, 539
BstMAI GTCTC 3 cut(s) 405, 577, 1014
BstMBI GATC 5 cut(s) 121, 154, 175, 325, 536
BstMCI CGRYCG 1 cut(s) 969
BstMWI GCNNNNNNNGC 6 cut(s) 361, 698, 924, 968, 971, 977
BstNSI RCATGY 1 cut(s) 184
BstV1I GCAGC 3 cut(s) 394, 949, 983
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BstZI CGGCCG 1 cut(s) 966
BsuRI GGCC 2 cut(s) 248, 968
BtsCI GGATG 1 cut(s) 537
Cac8I GCNNGC 3 cut(s) 394, 893, 1028
CciI TCATGA 1 cut(s) 718
CciNI GCGGCCGC 1 cut(s) 966
CfoI GCGC 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 941
Cfr13I GGNCC 1 cut(s) 898
Csp6I GTAC 3 cut(s) 841, 990, 1053
CspAI ACCGGT 1 cut(s) 941
CviAII CATG 7 cut(s) 59, 109, 181, 322, 469, 719, 867
CviQI GTAC 3 cut(s) 841, 990, 1053
DdeI CTNAG 2 cut(s) 166, 847
DpnI GATC 5 cut(s) 123, 156, 177, 327, 538
DpnII GATC 5 cut(s) 121, 154, 175, 325, 536
DraI TTTAAA 2 cut(s) 522, 750
EaeI YGGCCR 1 cut(s) 966
EagI CGGCCG 1 cut(s) 966
Eam1104I CTCTTC 3 cut(s) 40, 448, 1010
EarI CTCTTC 3 cut(s) 40, 448, 1010
Ecl136II GAGCTC 2 cut(s) 78, 115
EclXI CGGCCG 1 cut(s) 966
Eco130I CCWWGG 1 cut(s) 365
Eco24I GRGCYC 2 cut(s) 80, 117
Eco47I GGWCC 1 cut(s) 898
Eco52I CGGCCG 1 cut(s) 966
Eco53kI GAGCTC 2 cut(s) 78, 115
Eco57I CTGAAG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 2 cut(s) 78, 115
EcoT14I CCWWGG 1 cut(s) 365
EcoT38I GRGCYC 2 cut(s) 80, 117
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 7 cut(s) 62, 112, 184, 325, 472, 722, 870
FalI AAGNNNNNCTT 3 cut(s) 30, 610, 642
FatI CATG 7 cut(s) 58, 108, 180, 321, 468, 718, 866
FauNDI CATATG 1 cut(s) 976
Fnu4HI GCNGC 7 cut(s) 408, 693, 963, 966, 969, 972, 1031
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 2 cut(s) 80, 117
Fsp4HI GCNGC 7 cut(s) 408, 693, 963, 966, 969, 972, 1031
FspBI CTAG 6 cut(s) 404, 744, 876, 915, 987, 993
GlaI GCGC 1 cut(s) 480
GluI GCNGC 7 cut(s) 408, 693, 963, 966, 969, 972, 1031
HaeIII GGCC 2 cut(s) 248, 968
HapII CCGG 1 cut(s) 942
HhaI GCGC 1 cut(s) 481
Hin1II CATG 7 cut(s) 62, 112, 184, 325, 472, 722, 870
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 6 cut(s) 143, 240, 508, 715, 845, 983
HpaII CCGG 1 cut(s) 942
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 6 cut(s) 169, 220, 442, 450, 631, 922
Hpy188III TCNNGA 4 cut(s) 125, 375, 512, 719
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 2 cut(s) 455, 830
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 4 cut(s) 410, 736, 817, 870
HpyF10VI GCNNNNNNNGC 6 cut(s) 361, 698, 924, 968, 971, 977
HpyF3I CTNAG 2 cut(s) 166, 847
Hsp92II CATG 7 cut(s) 62, 112, 184, 325, 472, 722, 870
HspAI GCGC 1 cut(s) 479
Kzo9I GATC 5 cut(s) 121, 154, 175, 325, 536
LmnI GCTCC 6 cut(s) 59, 83, 112, 212, 499, 923
LpnPI CCDG 9 cut(s) 153, 165, 217, 251, 406, 410, 881, 955, 1058
Lsp1109I GCAGC 3 cut(s) 394, 949, 983
LweI GCATC 1 cut(s) 704
MaeI CTAG 6 cut(s) 404, 744, 876, 915, 987, 993
MaeIII GTNAC 1 cut(s) 905
MalI GATC 5 cut(s) 123, 156, 177, 327, 538
MboI GATC 5 cut(s) 121, 154, 175, 325, 536
MboII GAAGA 8 cut(s) 27, 140, 430, 465, 470, 631, 1027, 1071
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 80, 117
MluCI AATT 3 cut(s) 523, 662, 687
MlyI GAGTC 3 cut(s) 234, 724, 839
MmeI TCCRAC 1 cut(s) 306
MseI TTAA 7 cut(s) 66, 200, 489, 521, 675, 749, 933
MspA1I CMGCKG 1 cut(s) 962
MspI CCGG 1 cut(s) 942
MwoI GCNNNNNNNGC 6 cut(s) 361, 698, 924, 968, 971, 977
NdeI CATATG 1 cut(s) 976
NdeII GATC 5 cut(s) 121, 154, 175, 325, 536
NlaIII CATG 7 cut(s) 62, 112, 184, 325, 472, 722, 870
NlaIV GGNNCC 1 cut(s) 946
NotI GCGGCCGC 1 cut(s) 966
NspI RCATGY 1 cut(s) 184
PaeR7I CTCGAG 1 cut(s) 242
PagI TCATGA 1 cut(s) 718
PfeI GAWTC 3 cut(s) 143, 508, 983
PinAI ACCGGT 1 cut(s) 941
PkrI GCNGC 7 cut(s) 409, 694, 964, 967, 970, 973, 1032
PleI GAGTC 3 cut(s) 234, 723, 839
PpsI GAGTC 3 cut(s) 234, 723, 839
Psp124BI GAGCTC 2 cut(s) 80, 117
PspN4I GGNNCC 1 cut(s) 946
PspPI GGNCC 1 cut(s) 898
PspXI VCTCGAGB 1 cut(s) 242
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 3 cut(s) 842, 991, 1054
RsaNI GTAC 3 cut(s) 841, 990, 1053
SacI GAGCTC 2 cut(s) 80, 117
SaqAI TTAA 7 cut(s) 66, 200, 489, 521, 675, 749, 933
SatI GCNGC 7 cut(s) 408, 693, 963, 966, 969, 972, 1031
Sau3AI GATC 5 cut(s) 121, 154, 175, 325, 536
Sau96I GGNCC 1 cut(s) 898
ScaI AGTACT 1 cut(s) 991
SchI GAGTC 3 cut(s) 234, 724, 839
SduI GDGCHC 2 cut(s) 80, 117
SfaNI GCATC 1 cut(s) 704
Sfr274I CTCGAG 1 cut(s) 242
SgrAI CRCCGGYG 1 cut(s) 941
SinI GGWCC 1 cut(s) 898
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 3 cut(s) 73, 242, 606
SmoI CTYRAG 3 cut(s) 73, 242, 606
SpeI ACTAGT 1 cut(s) 992
Sse9I AATT 3 cut(s) 523, 662, 687
SsiI CCGC 7 cut(s) 353, 692, 701, 960, 965, 969, 1030
SspMI CTAG 6 cut(s) 404, 744, 876, 915, 987, 993
SstI GAGCTC 2 cut(s) 80, 117
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 273
TaqI TCGA 5 cut(s) 104, 238, 243, 513, 622
TasI AATT 3 cut(s) 523, 662, 687
TatI WGTACW 2 cut(s) 989, 1052
TauI GCSGC 4 cut(s) 695, 968, 971, 1033
TfiI GAWTC 3 cut(s) 143, 508, 983
Tru1I TTAA 7 cut(s) 66, 200, 489, 521, 675, 749, 933
Tru9I TTAA 7 cut(s) 66, 200, 489, 521, 675, 749, 933
TseI GCWGC 3 cut(s) 407, 962, 971
TspDTI ATGAA 7 cut(s) 286, 322, 417, 431, 457, 669, 849
VpaK11BI GGWCC 1 cut(s) 898
XapI RAATTY 1 cut(s) 662
XceI RCATGY 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 6 cut(s) 404, 744, 876, 915, 987, 993
ZrmI AGTACT 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.