pycom10g25770

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014684
Physical Location & Seq
Forward (+)
27288261 .. 27289965
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g25770.5

Sequence Viewer

Length: 954 bp
ATGAGTTTGATCGTTCAGGAACACAACTCCGATACAATCCCAGATCTCTTTGCCTCAGAAAATGATCACATGCCCTCCCAAAACTTCCCAAACAGCTCAAAACACACTGATTTCTACTTTACTTTTCGCCTCAAAGCCATTTCTCGGTTTTTACAGGTTCAGTATTCTTGCAACCTTGACCCTTTCATACCTTACCTTGCCATTAACTACCTGGATCGATTCGTATCGAAGTGCGATATTCCGCAAGGAAAGCCTTGGGTCTCAAGGCTTGTGGAAGTATCTTGTCTATCTCTAGCTGCAAAGATGAAGAACACACCCTTCTCCTACTGTGATTTTCAGAGAGGGGAAGGTTTCGTCTTCGATGTGCAAACGGTTCATAAAATGGAGGTTCTCATTCTCAATACTCTAGATTGGCGGATGAGATCGATAACTCCTTTTTCTTTTCTGCATTTCTTCTTGTCTTCGCTGGACTTAAACGATCGGCCACTTACACAAGGTCTCAGAAATCGAGCTTCGGATATCATCTTCAATGCCCATAATGAAATTAAATTTGTAGAGTTTAAGCCATCAATAATTGCAGCATCAGCTGTCCTATCTGCATGCCATGAGCTGCTCCCACCGAAGTTCCCTCCTTTTAAAGCTGCACTATCATCTTTCCAATATGTAAATAAAGTAAGCACAGAGAGTTTGTTCAAATGCTTCAATTTTATGCAAGAAATGGTAGAGAATGAAAGGTTGGATACTATGTCCTGCACAAGAACCCCAGTGAGCGTTCTCGACCATCACCCTACTAGATTTGAAAGTGAGAACACCATTGGCAACGTGGCGACCACCACCACATATACTTCTGTTTCTTTGGCAGCAGAGAAGAGAAACAGCAAAAGGCGTAGATTAACTGGCACTTTCTGCAGTGAAAATATGTACAAGCTTTCTTATCATGTTCAACAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

318

Amino Acids

36.49

Weight (kDa)

8.04

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014684)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03720
malus_domestica MD05G1327100.v1.1 MD10G1305200.v1.1
prunus_persica Prupe.4G034400_v2.0.a1
pyrus_communis pycom10g25770
rosa_chinensis RchiOBHm_Chr5g0005771
rosa_laevigata RLG00000031325
rosa_multiflora Rmu_sc0014513.1_g000001 Rmu_sc0017047.1_g000001
rosa_roxburghii Rroxscaffold_1G00070090
rosa_rugosa Rorug04G0418000 Rorug04G0418100
rosa_samantha Rh5AG045500 Rh5BG044200 Rh5CG053000 Rh5DG044000
rosa_wichuraiana Rw5G004580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 242, 415
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 1 cut(s) 548
AfaI GTAC 1 cut(s) 923
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 5 cut(s) 529, 694, 703, 800, 944
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AluBI AGCT 7 cut(s) 96, 296, 512, 587, 610, 641, 928
AluI AGCT 7 cut(s) 96, 296, 512, 587, 610, 641, 928
Alw26I GTCTC 2 cut(s) 265, 503
AlwI GGATC 1 cut(s) 222
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 5 cut(s) 296, 578, 610, 641, 860
ApoI RAATTY 1 cut(s) 548
AsuHPI GGTGA 1 cut(s) 776
BbsI GAAGAC 2 cut(s) 349, 453
BbvI GCAGC 5 cut(s) 283, 590, 597, 628, 872
BccI CCATC 2 cut(s) 574, 789
BciT130I CCWGG 1 cut(s) 212
BciVI GTATCC 1 cut(s) 733
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 265, 503
BfaI CTAG 3 cut(s) 293, 407, 792
BfmI CTRYAG 1 cut(s) 907
BfuI GTATCC 1 cut(s) 733
BglII AGATCT 1 cut(s) 43
BisI GCNGC 5 cut(s) 297, 579, 611, 642, 861
BlsI GCNGC 5 cut(s) 298, 580, 612, 643, 862
Bme1390I CCNGG 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 212
BmrI ACTGGG 1 cut(s) 758
BmsI GCATC 1 cut(s) 590
BmuI ACTGGG 1 cut(s) 758
BpiI GAAGAC 2 cut(s) 349, 453
BpuEI CTTGAG 1 cut(s) 247
Bsa29I ATCGAT 2 cut(s) 217, 425
BsaBI GATNNNNATC 1 cut(s) 223
BsaI GGTCTC 2 cut(s) 265, 503
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 764, 901
Bse8I GATNNNNATC 1 cut(s) 223
BseBI CCWGG 1 cut(s) 212
BseCI ATCGAT 2 cut(s) 217, 425
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 423
BseJI GATNNNNATC 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 69, 514
BseNI ACTGG 2 cut(s) 764, 901
BseXI GCAGC 5 cut(s) 283, 590, 597, 628, 872
BsgI GTGCAG 2 cut(s) 627, 736
Bsh1285I CGRYCG 1 cut(s) 481
BshFI GGCC 1 cut(s) 484
BshVI ATCGAT 2 cut(s) 217, 425
BsiEI CGRYCG 1 cut(s) 481
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 2 cut(s) 265, 503
BsnI GGCC 1 cut(s) 484
Bso31I GGTCTC 2 cut(s) 265, 503
Bsp1407I TGTACA 1 cut(s) 921
Bsp143I GATC 6 cut(s) 9, 43, 64, 214, 422, 478
BspACI CCGC 2 cut(s) 242, 415
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 2 cut(s) 68, 513
BspDI ATCGAT 2 cut(s) 217, 425
BspMAI CTGCAG 1 cut(s) 911
BspPI GGATC 1 cut(s) 222
BspTNI GGTCTC 2 cut(s) 265, 503
BsrGI TGTACA 1 cut(s) 921
BsrI ACTGG 2 cut(s) 764, 901
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 6 cut(s) 9, 43, 64, 214, 422, 478
BssT1I CCWWGG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 3 cut(s) 329, 373, 948
Bst6I CTCTTC 1 cut(s) 863
BstAPI GCANNNNNTGC 1 cut(s) 906
BstAUI TGTACA 1 cut(s) 921
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 2 cut(s) 55, 500
BstF5I GGATG 1 cut(s) 423
BstKTI GATC 6 cut(s) 12, 46, 67, 217, 425, 481
BstMAI GTCTC 2 cut(s) 265, 503
BstMBI GATC 6 cut(s) 9, 43, 64, 214, 422, 478
BstMCI CGRYCG 1 cut(s) 481
BstMWI GCNNNNNNNGC 3 cut(s) 250, 584, 906
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 2 cut(s) 73, 603
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 907
BstV1I GCAGC 5 cut(s) 283, 590, 597, 628, 872
BstV2I GAAGAC 2 cut(s) 349, 453
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
Bsu15I ATCGAT 2 cut(s) 217, 425
BsuI GTATCC 1 cut(s) 733
BsuRI GGCC 1 cut(s) 484
BsuTUI ATCGAT 2 cut(s) 217, 425
BtsCI GGATG 1 cut(s) 423
BtsI GCAGTG 1 cut(s) 916
BtsIMutI CAGTG 4 cut(s) 105, 771, 916, 953
Cac8I GCNNGC 1 cut(s) 601
ClaI ATCGAT 2 cut(s) 217, 425
Csp6I GTAC 1 cut(s) 922
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 4 cut(s) 70, 600, 605, 938
CviQI GTAC 1 cut(s) 922
DdeI CTNAG 2 cut(s) 55, 500
DpnI GATC 6 cut(s) 11, 45, 66, 216, 424, 480
DpnII GATC 6 cut(s) 9, 43, 64, 214, 422, 478
DraI TTTAAA 1 cut(s) 637
EaeI YGGCCR 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 863
EarI CTCTTC 1 cut(s) 863
EciI GGCGGA 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 254
Eco31I GGTCTC 2 cut(s) 265, 503
Eco32I GATATC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 210
EcoRV GATATC 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 4 cut(s) 73, 603, 608, 941
FatI CATG 4 cut(s) 69, 599, 604, 937
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 5 cut(s) 297, 579, 611, 642, 861
FokI GGATG 1 cut(s) 430
Fsp4HI GCNGC 5 cut(s) 297, 579, 611, 642, 861
FspBI CTAG 3 cut(s) 293, 407, 792
GluI GCNGC 5 cut(s) 297, 579, 611, 642, 861
HaeIII GGCC 1 cut(s) 484
Hin1II CATG 4 cut(s) 73, 603, 608, 941
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 1 cut(s) 219
HphI GGTGA 1 cut(s) 776
Hpy188I TCNGA 5 cut(s) 31, 58, 339, 503, 517
Hpy188III TCNNGA 3 cut(s) 17, 407, 776
HpyAV CCTTC 2 cut(s) 328, 341
HpyCH4III ACNGT 3 cut(s) 329, 373, 948
HpyCH4IV ACGT 1 cut(s) 822
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 584, 906
HpyF3I CTNAG 2 cut(s) 55, 500
HpySE526I ACGT 1 cut(s) 822
Hsp92II CATG 4 cut(s) 73, 603, 608, 941
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 6 cut(s) 9, 43, 64, 214, 422, 478
LmnI GCTCC 1 cut(s) 618
LpnPI CCDG 9 cut(s) 2, 54, 140, 197, 224, 452, 763, 777, 882
Lsp1109I GCAGC 5 cut(s) 283, 590, 597, 628, 872
LweI GCATC 1 cut(s) 590
MaeI CTAG 3 cut(s) 293, 407, 792
MaeII ACGT 1 cut(s) 822
MalI GATC 6 cut(s) 11, 45, 66, 216, 424, 480
MboI GATC 6 cut(s) 9, 43, 64, 214, 422, 478
MboII GAAGA 6 cut(s) 319, 349, 445, 453, 517, 880
MflI RGATCY 1 cut(s) 43
MluCI AATT 4 cut(s) 543, 548, 573, 703
MmeI TCCRAC 1 cut(s) 717
MnlI CCTC 6 cut(s) 64, 85, 140, 335, 379, 639
MseI TTAA 6 cut(s) 204, 473, 546, 561, 636, 893
MspA1I CMGCKG 1 cut(s) 587
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 250, 584, 906
NdeII GATC 6 cut(s) 9, 43, 64, 214, 422, 478
NlaIII CATG 4 cut(s) 73, 603, 608, 941
NspI RCATGY 2 cut(s) 73, 603
PaeI GCATGC 1 cut(s) 603
PfeI GAWTC 1 cut(s) 219
PkrI GCNGC 5 cut(s) 298, 580, 612, 643, 862
Ple19I CGATCG 1 cut(s) 481
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PstI CTGCAG 1 cut(s) 911
PsuI RGATCY 1 cut(s) 43
PvuI CGATCG 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 1 cut(s) 923
RsaNI GTAC 1 cut(s) 922
SaqAI TTAA 6 cut(s) 204, 473, 546, 561, 636, 893
SatI GCNGC 5 cut(s) 297, 579, 611, 642, 861
Sau3AI GATC 6 cut(s) 9, 43, 64, 214, 422, 478
ScrFI CCNGG 1 cut(s) 212
SfaNI GCATC 1 cut(s) 590
SfcI CTRYAG 1 cut(s) 907
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SphI GCATGC 1 cut(s) 603
Sse9I AATT 4 cut(s) 543, 548, 573, 703
SsiI CCGC 2 cut(s) 242, 415
SspMI CTAG 3 cut(s) 293, 407, 792
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 3 cut(s) 329, 373, 948
TaiI ACGT 1 cut(s) 825
TaqI TCGA 6 cut(s) 217, 227, 360, 425, 508, 777
TasI AATT 4 cut(s) 543, 548, 573, 703
TatI WGTACW 1 cut(s) 921
TfiI GAWTC 1 cut(s) 219
Tru1I TTAA 6 cut(s) 204, 473, 546, 561, 636, 893
Tru9I TTAA 6 cut(s) 204, 473, 546, 561, 636, 893
TscAI CASTG 4 cut(s) 112, 771, 916, 953
TseI GCWGC 5 cut(s) 296, 578, 610, 641, 860
TspDTI ATGAA 5 cut(s) 175, 320, 365, 555, 744
TspRI CASTG 4 cut(s) 112, 771, 916, 953
XapI RAATTY 1 cut(s) 548
XbaI TCTAGA 1 cut(s) 406
XceI RCATGY 2 cut(s) 73, 603
XcmI CCANNNNNNNNNTGG 2 cut(s) 208, 820
XspI CTAG 3 cut(s) 293, 407, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.