Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014684

Physical Location & Seq

Genomic Coordinates Forward (+)

90938551 .. 90941333

Gene Structure 2783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCGAAGCTTCTCTTTCCCATCATTATTACTCTCTTCCTCTAACAACTTTTGCTCCCATGTCCTTAACTCCTTGAGCTCCTCATCAATCACTCAAAACAAGTCGAACATGGAACTCTTTAATCTTGAAGAACACAACCCAGATTCTATCCCAGATCTATTTGCCTCAGAAACTGATCACATGCCCTCACAGAACTTCTTAACCAGCTCCATACACTCCGATTTCTACTGCTCATTTCGACTCGAGGCCATTTCTCTGTTTTTACAGGCACAGTATTCCTGCAACCTTGACTCTTTCACTCCTTACCTTGCCATTAACTACCTGGATCGGTTCATTTCCAAGCAAAACATTCCGCAAGGAAAGCCTCGGGTTTCAAGACTTGTTGAAGTCGCCTGCCTGTCTCTAGCTGCAAAAATGAAGAACACTTCATTCTCATTCTCTGATTTTCAGAGAAGAGAAGAAGGTTTCATGTTTGAGGCGCAAACGATTAACAAAATGGAGCTTGTGATTCTCGACACATTAAATTGGAGGATGAGATCAATAACTCCTTTCTCCTTTCTACATTTCTTTGTTTCTTTGGTGGACATAAATGAGCGACCACTCACTCAAGCCCTCAAAAGTCGAGCTTCAGATGTCATCTTCAATGCCCATAATGAAATCAAATTCGTTGAGTTTAAGCCATCGATAATTGCGGCATCGGCGGTTTTGTTTGCGAGTCATGAGCTACTTCCATTGCAGTTCCCTAGTTTAAAAGTTTCAATATCATCTTGCCAATATGTACATAAAGAGAGTTTGTTGAAATGCTTGAACCTAATGCAAGAAATGATAGTGAATGAAGGGTACGACTCAGTTTTAGATACTCTGTCATGCACAACTAGAACTCCAATGAGCGTGCTGGACCATCGTCACTTCTCTAGCTCCGAAAGCGAGGTTAATAGCACTGCTGCCACCACCACAACCACCACAGCTGCGGCCGCAGCATATGCTGATTCTAGTACTAGTAGTGTAATGGTGGCAGAGAAGAGAGATAGCAAGCGGCGTAGATTGAATGGTTTTTGTACAAGTGAAAATAGGTTTCAGGTTTCTTCTCATCATTTTCAACATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

369

Amino Acids

41.69

Weight (kDa)

6.35

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	54 - 179	1.6e-21	Cyclin, N-terminal domain
Cyclin_C	PF02984	181 - 279	3.3e-09	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03720
malus_domestica	MD05G1327100.v1.1 MD10G1305200.v1.1
prunus_persica	Prupe.4G034400_v2.0.a1
pyrus_communis	pycom10g25770
rosa_chinensis	RchiOBHm_Chr5g0005771
rosa_laevigata	RLG00000031325
rosa_multiflora	Rmu_sc0014513.1_g000001 Rmu_sc0017047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070090
rosa_rugosa	Rorug04G0418000 Rorug04G0418100
rosa_samantha	Rh5AG045500 Rh5BG044200 Rh5CG053000 Rh5DG044000
rosa_wichuraiana	Rw5G004580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	353, 692, 701, 971, 975, 1036
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	972
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	4 cut(s)	780, 842, 997, 1060
AgsI	TTSAA	9 cut(s)	128, 375, 386, 643, 759, 799, 808, 1048, 1100
AhlI	ACTAGT	1 cut(s)	998
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	9 cut(s)	9, 78, 207, 407, 502, 626, 724, 918, 968
AluI	AGCT	9 cut(s)	9, 78, 207, 407, 502, 626, 724, 918, 968
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	333
AlwNI	CAGNNNCTG	1 cut(s)	173
Ama87I	CYCGRG	2 cut(s)	242, 366
AoxI	GGCC	2 cut(s)	246, 972
ApeKI	GCWGC	4 cut(s)	407, 944, 968, 977
ApoI	RAATTY	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	1 cut(s)	898
AvaI	CYCGRG	2 cut(s)	242, 366
AvaII	GGWCC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	4 cut(s)	394, 931, 955, 989
BccI	CCATC	3 cut(s)	28, 688, 909
BciT130I	CCWGG	1 cut(s)	323
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	405
BcuI	ACTAGT	1 cut(s)	998
BfaI	CTAG	6 cut(s)	404, 744, 876, 915, 993, 999
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	8 cut(s)	408, 693, 945, 969, 972, 975, 978, 1037
BlsI	GCNGC	8 cut(s)	409, 694, 946, 970, 973, 976, 979, 1038
BmcAI	AGTACT	1 cut(s)	997
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	898
BmeT110I	CYCGRG	2 cut(s)	242, 366
BmgT120I	GGNCC	1 cut(s)	898
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	704
BoxI	GACNNNNGTC	1 cut(s)	903
BpuEI	CTTGAG	2 cut(s)	94, 591
Bsa29I	ATCGAT	1 cut(s)	683
BsaJI	CCNNGG	1 cut(s)	365
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 865, 895
Bse3DI	GCAATG	1 cut(s)	731
BseBI	CCWGG	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	683
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	537
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	2 cut(s)	180, 861
BseRI	GAGGAG	1 cut(s)	70
BseX3I	CGGCCG	1 cut(s)	972
BseXI	GCAGC	4 cut(s)	394, 931, 955, 989
Bsh1285I	CGRYCG	1 cut(s)	975
BshFI	GGCC	2 cut(s)	248, 974
BshVI	ATCGAT	1 cut(s)	683
BsiEI	CGRYCG	1 cut(s)	975
BsiHKAI	GWGCWC	1 cut(s)	80
BsiHKCI	CYCGRG	2 cut(s)	242, 366
BsmAI	GTCTC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	248, 974
BsoBI	CYCGRG	2 cut(s)	242, 366
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp1407I	TGTACA	2 cut(s)	778, 1058
Bsp143I	GATC	4 cut(s)	154, 175, 325, 536
BspACI	CCGC	6 cut(s)	353, 692, 701, 971, 975, 1036
BspANI	GGCC	2 cut(s)	248, 974
BspCNI	CTCAG	2 cut(s)	179, 860
BspDI	ATCGAT	1 cut(s)	683
BspHI	TCATGA	1 cut(s)	718
BspPI	GGATC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	731
BsrGI	TGTACA	2 cut(s)	778, 1058
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	4 cut(s)	154, 175, 325, 536
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	3 cut(s)	40, 448, 1016
BstAPI	GCANNNNNTGC	1 cut(s)	983
BstAUI	TGTACA	2 cut(s)	778, 1058
BstC8I	GCNNGC	3 cut(s)	394, 893, 1034
BstDEI	CTNAG	2 cut(s)	166, 847
BstF5I	GGATG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	4 cut(s)	157, 178, 328, 539
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	4 cut(s)	154, 175, 325, 536
BstMCI	CGRYCG	1 cut(s)	975
BstMWI	GCNNNNNNNGC	6 cut(s)	361, 698, 924, 974, 977, 983
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	903
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	4 cut(s)	394, 931, 955, 989
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BstZI	CGGCCG	1 cut(s)	972
Bsu15I	ATCGAT	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	248, 974
BsuTUI	ATCGAT	1 cut(s)	683
BtsCI	GGATG	1 cut(s)	537
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	1 cut(s)	939
Cac8I	GCNNGC	3 cut(s)	394, 893, 1034
CaiI	CAGNNNCTG	1 cut(s)	173
CciI	TCATGA	1 cut(s)	718
CciNI	GCGGCCGC	1 cut(s)	972
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	898
ClaI	ATCGAT	1 cut(s)	683
Csp6I	GTAC	4 cut(s)	779, 841, 996, 1059
CviAII	CATG	6 cut(s)	59, 109, 181, 469, 719, 867
CviQI	GTAC	4 cut(s)	779, 841, 996, 1059
DdeI	CTNAG	2 cut(s)	166, 847
DpnI	GATC	4 cut(s)	156, 177, 327, 538
DpnII	GATC	4 cut(s)	154, 175, 325, 536
DraI	TTTAAA	1 cut(s)	750
EaeI	YGGCCR	1 cut(s)	972
EagI	CGGCCG	1 cut(s)	972
Eam1104I	CTCTTC	3 cut(s)	40, 448, 1016
EarI	CTCTTC	3 cut(s)	40, 448, 1016
Ecl136II	GAGCTC	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	972
Eco24I	GRGCYC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	898
Eco52I	CGGCCG	1 cut(s)	972
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	612
Eco88I	CYCGRG	2 cut(s)	242, 366
EcoICRI	GAGCTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	80
FaeI	CATG	6 cut(s)	62, 112, 184, 472, 722, 870
FalI	AAGNNNNNCTT	3 cut(s)	30, 610, 642
FatI	CATG	6 cut(s)	58, 108, 180, 468, 718, 866
FauNDI	CATATG	1 cut(s)	982
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	8 cut(s)	408, 693, 945, 969, 972, 975, 978, 1037
FokI	GGATG	1 cut(s)	544
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	8 cut(s)	408, 693, 945, 969, 972, 975, 978, 1037
FspBI	CTAG	6 cut(s)	404, 744, 876, 915, 993, 999
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	8 cut(s)	408, 693, 945, 969, 972, 975, 978, 1037
HaeIII	GGCC	2 cut(s)	248, 974
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	6 cut(s)	62, 112, 184, 472, 722, 870
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	7 cut(s)	143, 240, 290, 508, 715, 845, 989
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	6 cut(s)	169, 220, 442, 450, 631, 922
Hpy188III	TCNNGA	4 cut(s)	125, 375, 512, 719
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	2 cut(s)	455, 830
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	282, 410, 736, 817, 870
HpyF10VI	GCNNNNNNNGC	6 cut(s)	361, 698, 924, 974, 977, 983
HpyF3I	CTNAG	2 cut(s)	166, 847
Hsp92II	CATG	6 cut(s)	62, 112, 184, 472, 722, 870
HspAI	GCGC	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	154, 175, 325, 536
LmnI	GCTCC	5 cut(s)	59, 83, 212, 499, 923
Lsp1109I	GCAGC	4 cut(s)	394, 931, 955, 989
LweI	GCATC	1 cut(s)	704
MaeI	CTAG	6 cut(s)	404, 744, 876, 915, 993, 999
MaeIII	GTNAC	1 cut(s)	905
MalI	GATC	4 cut(s)	156, 177, 327, 538
MboI	GATC	4 cut(s)	154, 175, 325, 536
MboII	GAAGA	8 cut(s)	27, 140, 430, 465, 470, 631, 1033, 1077
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	3 cut(s)	523, 662, 687
MlyI	GAGTC	4 cut(s)	234, 284, 724, 839
MseI	TTAA	9 cut(s)	66, 120, 200, 315, 489, 521, 675, 749, 933
MspA1I	CMGCKG	1 cut(s)	968
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	6 cut(s)	361, 698, 924, 974, 977, 983
NdeI	CATATG	1 cut(s)	982
NdeII	GATC	4 cut(s)	154, 175, 325, 536
NlaIII	CATG	6 cut(s)	62, 112, 184, 472, 722, 870
NmuCI	GTSAC	1 cut(s)	905
NotI	GCGGCCGC	1 cut(s)	972
NspI	RCATGY	1 cut(s)	184
PaeR7I	CTCGAG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	718
PfeI	GAWTC	3 cut(s)	143, 508, 989
PkrI	GCNGC	8 cut(s)	409, 694, 946, 970, 973, 976, 979, 1038
PleI	GAGTC	4 cut(s)	234, 284, 723, 839
PpsI	GAGTC	4 cut(s)	234, 284, 723, 839
PshAI	GACNNNNGTC	1 cut(s)	903
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	898
PspXI	VCTCGAGB	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	968
RsaI	GTAC	4 cut(s)	780, 842, 997, 1060
RsaNI	GTAC	4 cut(s)	779, 841, 996, 1059
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	9 cut(s)	66, 120, 200, 315, 489, 521, 675, 749, 933
SatI	GCNGC	8 cut(s)	408, 693, 945, 969, 972, 975, 978, 1037
Sau3AI	GATC	4 cut(s)	154, 175, 325, 536
Sau96I	GGNCC	1 cut(s)	898
ScaI	AGTACT	1 cut(s)	997
SchI	GAGTC	4 cut(s)	234, 284, 724, 839
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	80
SfaNI	GCATC	1 cut(s)	704
Sfr274I	CTCGAG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	898
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	3 cut(s)	73, 242, 606
SmoI	CTYRAG	3 cut(s)	73, 242, 606
SpeI	ACTAGT	1 cut(s)	998
Sse9I	AATT	3 cut(s)	523, 662, 687
SsiI	CCGC	6 cut(s)	353, 692, 701, 971, 975, 1036
SspMI	CTAG	6 cut(s)	404, 744, 876, 915, 993, 999
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	6 cut(s)	104, 238, 243, 513, 622, 683
TasI	AATT	3 cut(s)	523, 662, 687
TatI	WGTACW	3 cut(s)	778, 995, 1058
TauI	GCSGC	4 cut(s)	695, 974, 977, 1039
TfiI	GAWTC	3 cut(s)	143, 508, 989
Tru1I	TTAA	9 cut(s)	66, 120, 200, 315, 489, 521, 675, 749, 933
Tru9I	TTAA	9 cut(s)	66, 120, 200, 315, 489, 521, 675, 749, 933
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	1 cut(s)	905
TseI	GCWGC	4 cut(s)	407, 944, 968, 977
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	6 cut(s)	322, 417, 431, 457, 669, 849
TspRI	CASTG	1 cut(s)	946
VpaK11BI	GGWCC	1 cut(s)	898
XapI	RAATTY	1 cut(s)	662
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XhoI	CTCGAG	1 cut(s)	242
XspI	CTAG	6 cut(s)	404, 744, 876, 915, 993, 999
ZrmI	AGTACT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.