Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011537

Physical Location & Seq

Genomic Coordinates Forward (+)

2850031 .. 2852837

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCGTCCAACACTCACTCTCCGTGCGCCGCGTGCAAGTTTCTCCGGCGGAAATGCACGCAGGAGTGCGTTTTCGCGCCTTACTTCCCGCCGGACCAGCCTCAGAAATTCGCCAACGTCCACCGCGTGTACGGCGCCAGCAACGTGGCCAAGATCCTCAACGAGCTCAACGCCGCCCACCGTGAGGACGCCGTGACTTCACTGGCCTATGAAGCGGAGTTTCGCCTCCGGGACCCGGTGTACGGCTGCGTGGGGCTCATCTCCGTCCTCCAGGACAGGCTCAAGAAGCTCCAGACGGATCTCTACAATGCCAAGAAGGATCTCTCCACCTACATTGGCCCTCAGGCACTGATGATCCCGGTGTTCCATCCGTCGCCGCAGCCGGAGATGAATGGCGGTGGTGCAATGGCTGTCCCCATGTTGGGAGTCCCAACTGGCCCGCAGCATGGCGGACATGCTGGGGGCCAGTTGGTGATTAGGGATCAGCAGCAGCAGATGTTCGAGGCGCAGCAGCAGGAGCTGGTGAGGTTCAATGTGAATGGGATTGAAAATGGAAATGGTTTTAATCAGATGGCTGGAGGAGGCGGTGGTGGTGGAGGTAGTAATGGTGTCTCATTGGGTCTAGGAGGTTTCGATAATAATGCTTTCAATAACCAGATGCAAGCTGCGGCAGCTGCACATCATCATCATCATCAGCATTCTGTTGACTATCAGCTTCAGGCCCAACTCATGCTGCAACCACAGCCTAAATCGGAGGGTGAGGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

257

Amino Acids

27.66

Weight (kDa)

6.44

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	8 - 105	1.9e-40	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04950 FvH4_3g04950 FvH4_3g04950 FvH4_3g04950 FvH4_3g04950
malus_domestica	MD05G1277500.v1.1 MD10G1256700.v1.1
prunus_persica	Prupe.4G086800_v2.0.a1
pyrus_communis	pycom10g21250
rosa_chinensis	RchiOBHm_Chr5g0015031
rosa_laevigata	RLG00000032162
rosa_multiflora	Rmu_sc0004889.1_g000025
rosa_roxburghii	Rroxscaffold_1G00061510
rosa_rugosa	Rorug05G0023000 Rorug05G0023100
rosa_samantha	Rh5AG118200 Rh5BG115400 Rh5CG126700 Rh5DG114900
rosa_wichuraiana	Rw5G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	3 cut(s)	32, 77, 126
AclWI	GGATC	5 cut(s)	148, 306, 327, 349, 489
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	701
AcyI	GRCGYC	2 cut(s)	135, 189
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	2 cut(s)	131, 242
AfiI	CCNNNNNNNGG	6 cut(s)	184, 235, 242, 421, 422, 446
AgsI	TTSAA	3 cut(s)	532, 548, 649
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	6 cut(s)	166, 289, 520, 665, 674, 715
AluI	AGCT	6 cut(s)	166, 289, 520, 665, 674, 715
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	616
AlwI	GGATC	5 cut(s)	148, 306, 327, 349, 489
AlwNI	CAGNNNCTG	2 cut(s)	349, 520
AoxI	GGCC	6 cut(s)	147, 204, 337, 436, 463, 720
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	4 cut(s)	29, 79, 137, 508
AspS9I	GGNCC	6 cut(s)	94, 232, 338, 437, 463, 721
AsuC2I	CCSGG	3 cut(s)	230, 236, 359
AsuHPI	GGTGA	3 cut(s)	484, 535, 770
AvaII	GGWCC	2 cut(s)	94, 232
AxyI	CCTNAGG	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	168, 258
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	2 cut(s)	375, 565
BceAI	ACGGC	3 cut(s)	148, 176, 259
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	1 cut(s)	272
BcnI	CCSGG	3 cut(s)	230, 236, 359
BcoDI	GTCTC	1 cut(s)	616
BfaI	CTAG	1 cut(s)	623
BfoI	RGCGCY	1 cut(s)	138
Bme1390I	CCNGG	4 cut(s)	230, 236, 272, 359
Bme18I	GGWCC	2 cut(s)	94, 232
BmgT120I	GGNCC	6 cut(s)	94, 232, 338, 437, 463, 721
BmiI	GGNNCC	4 cut(s)	136, 233, 234, 464
BmrFI	CCNGG	4 cut(s)	230, 236, 272, 359
BmsI	GCATC	1 cut(s)	648
BpmI	CTGGAG	3 cut(s)	254, 275, 597
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	3 cut(s)	230, 236, 359
BsaHI	GRCGYC	2 cut(s)	135, 189
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	6 cut(s)	184, 235, 242, 421, 422, 446
Bse1I	ACTGG	3 cut(s)	207, 439, 466
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	6 cut(s)	184, 235, 242, 421, 422, 446
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	116, 356
BseNI	ACTGG	3 cut(s)	207, 439, 466
BseRI	GAGGAG	1 cut(s)	594
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	3 cut(s)	32, 77, 126
BshFI	GGCC	6 cut(s)	149, 206, 339, 438, 465, 722
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	6 cut(s)	46, 92, 229, 236, 359, 383
BslFI	GGGAC	3 cut(s)	245, 398, 413
BslI	CCNNNNNNNGG	6 cut(s)	184, 235, 242, 421, 422, 446
BsmAI	GTCTC	1 cut(s)	616
BsmFI	GGGAC	3 cut(s)	245, 398, 413
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	6 cut(s)	149, 206, 339, 438, 465, 722
Bsp1286I	GDGCHC	2 cut(s)	168, 258
Bsp143I	GATC	5 cut(s)	153, 298, 319, 354, 481
BspANI	GGCC	6 cut(s)	149, 206, 339, 438, 465, 722
BspCNI	CTCAG	2 cut(s)	115, 355
BspFNI	CGCG	3 cut(s)	32, 77, 126
BspLI	GGNNCC	4 cut(s)	136, 233, 234, 464
BspPI	GGATC	5 cut(s)	148, 306, 327, 349, 489
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	3 cut(s)	207, 439, 466
BssMI	GATC	5 cut(s)	153, 298, 319, 354, 481
BssNI	GRCGYC	2 cut(s)	135, 189
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	182
BstACI	GRCGYC	2 cut(s)	135, 189
BstC8I	GCNNGC	5 cut(s)	34, 59, 139, 440, 663
BstDEI	CTNAG	2 cut(s)	102, 342
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	3 cut(s)	32, 77, 126
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	4 cut(s)	29, 79, 137, 508
BstKTI	GATC	5 cut(s)	156, 301, 322, 357, 484
BstMAI	GTCTC	1 cut(s)	616
BstMBI	GATC	5 cut(s)	153, 298, 319, 354, 481
BstMWI	GCNNNNNNNGC	9 cut(s)	33, 97, 132, 212, 286, 517, 671, 674, 742
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	4 cut(s)	228, 234, 270, 357
BstUI	CGCG	3 cut(s)	32, 77, 126
BstX2I	RGATCY	3 cut(s)	153, 298, 319
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	3 cut(s)	153, 298, 319
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	6 cut(s)	149, 206, 339, 438, 465, 722
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	200, 347
Cac8I	GCNNGC	5 cut(s)	34, 59, 139, 440, 663
CaiI	CAGNNNCTG	2 cut(s)	349, 520
CfoI	GCGC	4 cut(s)	29, 79, 137, 508
Cfr13I	GGNCC	6 cut(s)	94, 232, 338, 437, 463, 721
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	130, 241
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	4 cut(s)	418, 446, 455, 730
CviQI	GTAC	2 cut(s)	130, 241
DdeI	CTNAG	2 cut(s)	102, 342
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	5 cut(s)	155, 300, 321, 356, 483
DpnII	GATC	5 cut(s)	153, 298, 319, 354, 481
DraIII	CACNNNGTG	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	147
EciI	GGCGGA	2 cut(s)	64, 465
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	168, 258
Eco47I	GGWCC	2 cut(s)	94, 232
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	701
Eco81I	CCTNAGG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	270
EcoT38I	GRGCYC	2 cut(s)	168, 258
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
FaeI	CATG	4 cut(s)	421, 449, 458, 733
FaiI	YATR	5 cut(s)	210, 419, 447, 456, 731
FaqI	GGGAC	3 cut(s)	245, 398, 413
FatI	CATG	4 cut(s)	417, 445, 454, 729
FauI	CCCGC	2 cut(s)	96, 447
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	2 cut(s)	168, 258
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	4 cut(s)	28, 78, 136, 507
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	3 cut(s)	254, 275, 597
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	6 cut(s)	149, 206, 339, 438, 465, 722
HapII	CCGG	6 cut(s)	46, 92, 229, 236, 359, 383
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	4 cut(s)	29, 79, 137, 508
Hin1I	GRCGYC	2 cut(s)	135, 189
Hin1II	CATG	4 cut(s)	421, 449, 458, 733
Hin6I	GCGC	4 cut(s)	27, 77, 135, 506
HinP1I	GCGC	4 cut(s)	27, 77, 135, 506
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	6 cut(s)	46, 92, 229, 236, 359, 383
HphI	GGTGA	3 cut(s)	484, 535, 770
Hpy166II	GTNNAC	4 cut(s)	121, 130, 241, 706
Hpy188I	TCNGA	3 cut(s)	105, 570, 754
Hpy188III	TCNNGA	2 cut(s)	283, 292
Hpy8I	GTNNAC	4 cut(s)	121, 130, 241, 706
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	2 cut(s)	117, 144
HpyCH4V	TGCA	6 cut(s)	36, 57, 404, 661, 677, 736
HpyF10VI	GCNNNNNNNGC	9 cut(s)	33, 97, 132, 212, 286, 517, 671, 674, 742
HpyF3I	CTNAG	2 cut(s)	102, 342
HpySE526I	ACGT	2 cut(s)	117, 144
Hsp92I	GRCGYC	2 cut(s)	135, 189
Hsp92II	CATG	4 cut(s)	421, 449, 458, 733
HspAI	GCGC	4 cut(s)	27, 77, 135, 506
KasI	GGCGCC	1 cut(s)	134
KflI	GGGWCCC	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	153, 298, 319, 354, 481
LmnI	GCTCC	2 cut(s)	294, 517
LweI	GCATC	1 cut(s)	648
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	2 cut(s)	117, 144
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	5 cut(s)	155, 300, 321, 356, 483
MboI	GATC	5 cut(s)	153, 298, 319, 354, 481
MflI	RGATCY	3 cut(s)	153, 298, 319
MhlI	GDGCHC	2 cut(s)	168, 258
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	149
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	33
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	6 cut(s)	46, 92, 229, 236, 359, 383
MspR9I	CCNGG	4 cut(s)	230, 236, 272, 359
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	3 cut(s)	32, 77, 126
MwoI	GCNNNNNNNGC	9 cut(s)	33, 97, 132, 212, 286, 517, 671, 674, 742
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	3 cut(s)	230, 236, 359
NdeII	GATC	5 cut(s)	153, 298, 319, 354, 481
NlaIII	CATG	4 cut(s)	421, 449, 458, 733
NlaIV	GGNNCC	4 cut(s)	136, 233, 234, 464
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	697
PfoI	TCCNGGA	2 cut(s)	228, 270
PleI	GAGTC	1 cut(s)	434
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	434
PpuMI	RGGWCCY	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	4 cut(s)	136, 233, 234, 464
PspPI	GGNCC	6 cut(s)	94, 232, 338, 437, 463, 721
PspPPI	RGGWCCY	1 cut(s)	232
PstNI	CAGNNNCTG	2 cut(s)	349, 520
PsuI	RGATCY	3 cut(s)	153, 298, 319
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	2 cut(s)	131, 242
RsaNI	GTAC	2 cut(s)	130, 241
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	564
Sau3AI	GATC	5 cut(s)	153, 298, 319, 354, 481
Sau96I	GGNCC	6 cut(s)	94, 232, 338, 437, 463, 721
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	4 cut(s)	230, 236, 272, 359
SduI	GDGCHC	2 cut(s)	168, 258
SfaNI	GCATC	1 cut(s)	648
SfoI	GGCGCC	1 cut(s)	136
SinI	GGWCC	2 cut(s)	94, 232
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	107
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	623
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	4 cut(s)	228, 234, 270, 357
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	2 cut(s)	120, 147
TaqI	TCGA	2 cut(s)	501, 633
TasI	AATT	1 cut(s)	107
TauI	GCSGC	4 cut(s)	32, 176, 379, 671
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	2 cut(s)	207, 354
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	225, 404
TspGWI	ACGGA	4 cut(s)	12, 253, 311, 360
TspRI	CASTG	2 cut(s)	207, 354
VpaK11BI	GGWCC	2 cut(s)	94, 232
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	458
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.