Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011537

Physical Location & Seq

Genomic Coordinates Forward (+)

41227004 .. 41230797

Gene Structure 3794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1277500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCGTCAAACACTCATTCACCGTGCGCTGCGTGCAAGTTTTTACGGCGAAAATGCACACAAGAATGCGTGTTCGCCCCCTATTTCCCACCCGACCAACCTCAAAAGTTCGCAAACGTTCACAAGGTTTACGGTGCGAGCAACGTCGCCAAGATCCTGAACGAACTCAATGTTGCACACCGTGAAGATGCGGTGACATCATTGGCCTATGAGGCGGAGGCTCGTCTTCGGGACCCGGTGTATGGGTGCGTTGGTTTCATCTCAATCCTCCAGAACAGGCTCAAGCAAGTCCAGACTGACCTCTACAACGCCAAGAAAGATCTGTCTGCCTATATTGGCCCTCAGGCAATGATGATCCCCGTTTTTCCTCCGCCCCAACAAACAGACATGAACGGGTCTGTGCCTATGTTGGGGGTTTCCACTGGCCCTCCGCCCCAGCAGGGCTGTGGTGGAGGTCAGCTTGTGATTCGCGACCAGCATCAGCAACAATTGTTCGAGGCTCATCAGCAAGATCTTGTGAGGTTCAATATCAATGGTATGGACACCGCAGCGAGTTCAGTTACTGGAAATGGGTTTAATCAGATTCCCGCAGCTGCTGCTAGTAATGGTGTGGTGTCTGGTTCATTGGGTTTGGGTGGAGCTTTTGATAATAACCATTATAACCAGGTCCAACAGCAAGCAACTGCACATCATCAGAATTCCCTTGAATATCAGCTTCAGGCTCAGCTGATGCTCCAACCACAACCGGCGGCCGAGCAATCGCAGCAGAAATCAGAAGGCGAGGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

264

Amino Acids

28.57

Weight (kDa)

6.04

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	8 - 105	5.8e-41	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04950 FvH4_3g04950 FvH4_3g04950 FvH4_3g04950 FvH4_3g04950
malus_domestica	MD05G1277500.v1.1 MD10G1256700.v1.1
prunus_persica	Prupe.4G086800_v2.0.a1
pyrus_communis	pycom10g21250
rosa_chinensis	RchiOBHm_Chr5g0015031
rosa_laevigata	RLG00000032162
rosa_multiflora	Rmu_sc0004889.1_g000025
rosa_roxburghii	Rroxscaffold_1G00061510
rosa_rugosa	Rorug05G0023000 Rorug05G0023100
rosa_samantha	Rh5AG118200 Rh5BG115400 Rh5CG126700 Rh5DG114900
rosa_wichuraiana	Rw5G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AccII	CGCG	1 cut(s)	471
AciI	CCGC	7 cut(s)	191, 215, 371, 431, 546, 588, 749
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	2 cut(s)	148, 349
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	701
AdeI	CACNNNGTG	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	242, 410, 440
AgsI	TTSAA	2 cut(s)	526, 707
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	5 cut(s)	460, 593, 641, 715, 727
AluI	AGCT	5 cut(s)	460, 593, 641, 715, 727
AlwI	GGATC	2 cut(s)	148, 349
AlwNI	CAGNNNCTG	2 cut(s)	563, 596
AoxI	GGCC	4 cut(s)	204, 337, 424, 750
ApeKI	GCWGC	6 cut(s)	29, 548, 590, 593, 596, 763
ApoI	RAATTY	1 cut(s)	697
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	4 cut(s)	232, 338, 425, 667
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	12, 205
AvaII	GGWCC	2 cut(s)	232, 667
AxyI	CCTNAGG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	6 cut(s)	16, 560, 580, 583, 602, 775
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	665
BcnI	CCSGG	1 cut(s)	236
BfaI	CTAG	1 cut(s)	600
BglI	GCCNNNNNGGC	1 cut(s)	212
BglII	AGATCT	2 cut(s)	319, 511
BisI	GCNGC	7 cut(s)	30, 549, 591, 594, 597, 750, 764
BlpI	GCTNAGC	1 cut(s)	723
BlsI	GCNGC	7 cut(s)	31, 550, 592, 595, 598, 751, 765
Bme1390I	CCNGG	2 cut(s)	236, 665
Bme18I	GGWCC	2 cut(s)	232, 667
BmgT120I	GGNCC	4 cut(s)	232, 338, 425, 667
BmiI	GGNNCC	2 cut(s)	233, 234
BmrFI	CCNGG	2 cut(s)	236, 665
BmsI	GCATC	3 cut(s)	178, 487, 720
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 410, 440
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	2 cut(s)	427, 568
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	665
BseLI	CCNNNNNNNGG	3 cut(s)	242, 410, 440
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	2 cut(s)	356, 737
BseNI	ACTGG	2 cut(s)	427, 568
BseX3I	CGGCCG	1 cut(s)	750
BseXI	GCAGC	6 cut(s)	16, 560, 580, 583, 602, 775
BseYI	CCCAGC	1 cut(s)	435
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	1 cut(s)	471
Bsh1285I	CGRYCG	1 cut(s)	753
BshFI	GGCC	4 cut(s)	206, 339, 426, 752
BsiEI	CGRYCG	1 cut(s)	753
BsiSI	CCGG	2 cut(s)	236, 746
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	242, 410, 440
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	4 cut(s)	206, 339, 426, 752
Bsp143I	GATC	4 cut(s)	153, 319, 354, 511
Bsp1720I	GCTNAGC	1 cut(s)	723
Bsp68I	TCGCGA	1 cut(s)	471
BspACI	CCGC	7 cut(s)	191, 215, 371, 431, 546, 588, 749
BspANI	GGCC	4 cut(s)	206, 339, 426, 752
BspCNI	CTCAG	2 cut(s)	355, 736
BspFNI	CGCG	1 cut(s)	471
BspLI	GGNNCC	2 cut(s)	233, 234
BspPI	GGATC	2 cut(s)	148, 349
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	745
BsrI	ACTGG	2 cut(s)	427, 568
BssAI	RCCGGY	1 cut(s)	745
BssMI	GATC	4 cut(s)	153, 319, 354, 511
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	3 cut(s)	24, 134, 182
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	3 cut(s)	34, 139, 678
BstDEI	CTNAG	2 cut(s)	342, 723
BstFNI	CGCG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	4 cut(s)	156, 322, 357, 514
BstMBI	GATC	4 cut(s)	153, 319, 354, 511
BstMCI	CGRYCG	1 cut(s)	753
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 212, 596, 763
BstNI	CCWGG	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	234, 663
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	6 cut(s)	16, 560, 580, 583, 602, 775
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	3 cut(s)	153, 319, 511
BstYI	RGATCY	3 cut(s)	153, 319, 511
BstZI	CGGCCG	1 cut(s)	750
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	4 cut(s)	206, 339, 426, 752
BtsIMutI	CAGTG	1 cut(s)	420
BtuMI	TCGCGA	1 cut(s)	471
Cac8I	GCNNGC	3 cut(s)	34, 139, 678
CaiI	CAGNNNCTG	2 cut(s)	563, 596
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	745
Cfr13I	GGNCC	4 cut(s)	232, 338, 425, 667
CsiI	ACCWGGT	1 cut(s)	663
CviAII	CATG	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	342, 723
DpnI	GATC	4 cut(s)	155, 321, 356, 513
DpnII	GATC	4 cut(s)	153, 319, 354, 511
DraIII	CACNNNGTG	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	750
EagI	CGGCCG	1 cut(s)	750
EciI	GGCGGA	3 cut(s)	230, 360, 420
EclXI	CGGCCG	1 cut(s)	750
Eco47I	GGWCC	2 cut(s)	232, 667
Eco52I	CGGCCG	1 cut(s)	750
Eco57I	CTGAAG	1 cut(s)	701
Eco81I	CCTNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	663
FaeI	CATG	1 cut(s)	391
FaiI	YATR	7 cut(s)	210, 243, 333, 389, 407, 539, 660
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	1 cut(s)	387
FauI	CCCGC	1 cut(s)	595
Fnu4HI	GCNGC	7 cut(s)	30, 549, 591, 594, 597, 750, 764
Fsp4HI	GCNGC	7 cut(s)	30, 549, 591, 594, 597, 750, 764
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	7 cut(s)	30, 549, 591, 594, 597, 750, 764
GsaI	CCCAGC	1 cut(s)	439
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	4 cut(s)	206, 339, 426, 752
HapII	CCGG	2 cut(s)	236, 746
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	391
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	466, 583
HpaII	CCGG	2 cut(s)	236, 746
HphI	GGTGA	2 cut(s)	12, 205
Hpy166II	GTNNAC	2 cut(s)	121, 130
Hpy188I	TCNGA	3 cut(s)	582, 696, 775
Hpy188III	TCNNGA	5 cut(s)	157, 230, 271, 292, 470
Hpy8I	GTNNAC	2 cut(s)	121, 130
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	770
HpyCH4III	ACNGT	3 cut(s)	24, 134, 182
HpyCH4IV	ACGT	2 cut(s)	117, 144
HpyCH4V	TGCA	4 cut(s)	36, 57, 176, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 212, 596, 763
HpyF3I	CTNAG	2 cut(s)	342, 723
HpySE526I	ACGT	2 cut(s)	117, 144
Hsp92II	CATG	1 cut(s)	391
HspAI	GCGC	1 cut(s)	27
KflI	GGGWCCC	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	153, 319, 354, 511
LmnI	GCTCC	2 cut(s)	638, 738
Lsp1109I	GCAGC	6 cut(s)	16, 560, 580, 583, 602, 775
LweI	GCATC	3 cut(s)	178, 487, 720
MabI	ACCWGGT	1 cut(s)	663
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	2 cut(s)	117, 144
MaeIII	GTNAC	2 cut(s)	193, 559
MalI	GATC	4 cut(s)	155, 321, 356, 513
MboI	GATC	4 cut(s)	153, 319, 354, 511
MboII	GAAGA	2 cut(s)	197, 218
MfeI	CAATTG	1 cut(s)	488
MflI	RGATCY	3 cut(s)	153, 319, 511
MluCI	AATT	2 cut(s)	488, 697
MmeI	TCCRAC	2 cut(s)	694, 760
MseI	TTAA	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	64
MspA1I	CMGCKG	2 cut(s)	593, 727
MspI	CCGG	2 cut(s)	236, 746
MspR9I	CCNGG	2 cut(s)	236, 665
MunI	CAATTG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	4 cut(s)	33, 212, 596, 763
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	4 cut(s)	153, 319, 354, 511
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	2 cut(s)	233, 234
NmeAIII	GCCGAG	1 cut(s)	778
NmuCI	GTSAC	1 cut(s)	193
NruI	TCGCGA	1 cut(s)	471
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	466, 583
PkrI	GCNGC	7 cut(s)	31, 550, 592, 595, 598, 751, 765
PpuMI	RGGWCCY	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	660
Psp1406I	AACGTT	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	233, 234
PspPI	GGNCC	4 cut(s)	232, 338, 425, 667
PspPPI	RGGWCCY	1 cut(s)	232
PstNI	CAGNNNCTG	2 cut(s)	563, 596
PsuI	RGATCY	3 cut(s)	153, 319, 511
PvuII	CAGCTG	2 cut(s)	593, 727
RruI	TCGCGA	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	7 cut(s)	30, 549, 591, 594, 597, 750, 764
Sau3AI	GATC	4 cut(s)	153, 319, 354, 511
Sau96I	GGNCC	4 cut(s)	232, 338, 425, 667
ScrFI	CCNGG	2 cut(s)	236, 665
SexAI	ACCWGGT	1 cut(s)	663
SfaNI	GCATC	3 cut(s)	178, 487, 720
SinI	GGWCC	2 cut(s)	232, 667
SmiMI	CAYNNNNRTG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	488, 697
SsiI	CCGC	7 cut(s)	191, 215, 371, 431, 546, 588, 749
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	234, 663
TaaI	ACNGT	3 cut(s)	24, 134, 182
TaiI	ACGT	2 cut(s)	120, 147
TaqI	TCGA	1 cut(s)	495
TasI	AATT	2 cut(s)	488, 697
TauI	GCSGC	1 cut(s)	752
TfiI	GAWTC	2 cut(s)	466, 583
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	6 cut(s)	29, 548, 590, 593, 596, 763
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	247, 404, 612
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	2 cut(s)	232, 667
XapI	RAATTY	1 cut(s)	697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.