Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011537

Physical Location & Seq

Genomic Coordinates Forward (+)

1454253 .. 1455704

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0023000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCTTCGATCAGACACGGTTCCGTTTCGACACAAAGAAGAGTACTCCTGTGAACCCCAGATGGTAAATGATGAGATGTTCATGAGGTTAGGAGGAGAGATTTTGAGGAAGGACAACTGCATCGAATATCTAAAGACCTTGCGGAACTTCAACTACTATGTCTACCACCACTTCGTCAATCTTATGAAAGACTTCAAGCCAAAAGGTGACCACTGTATTGAAACTTTGAAGCAGAAGGTGCAGGACTTATTTGAAGGGTGTCCGGATTTGTTATTAGGGTTCAATGCCTTCTTGCCCATGAGACATAAAATTAACGTGCCAATCTCAATAAAAGTCCAGACCACCAGAAAACTCCCAATAGTTCTTTCTCGAAAGAGAAAGCGCGACGATGATACTTGTGATGTTGTTGATGATGCTGGATCTAATGACTCTAAGCTTCAAAAGGTGATCGGTTTTGTGAACAAGGTTAGAGATAGATTTCGCAACGATAGTGAGGAAGGTGATGATGTTTTTCAGTCCTTTTTAGATATTTTCTTGAATTATCACTGCAAAAGAAACAAGTCATCACCCAATAGAAACAATTTATCACCCAAAAAGTCCGGCAGTACTGCTGATGAAGATGAGCTTCAGATTTACAAGAAGGTTAAAGCACTTTTCGATGGCCACCCGGACTTGATGGATGAGTTCACCCACTTTTTACCAACAGTGCCTTTACCTTCACTTTCCTCAGTCATTGATTTCGCTAACTGCGAGACTTGCACTCCAAGCTACCGTCTTTTGCCAGAGAGTTTCCCCATTCCTGCGGCCACCAAACGATCGAAGCTTGCTTCTCAAGTATTGAATGATCGTTGGATATGCGTTCCGAGTACTAATTCAAGAGGAGGAGGAGGAGGAAACACACAACAAAACATGTTCGGGTGGGAAGATAAAAGGTTCGAACTTGATAGGAAGGTGAACACTGTCAGTTCAGCCTCAAAGAGTATCAAAAAGCTGCTGAAAAAGATTGAAAAGGATAGTCCATCAGAGATCTATATTGAAGATCATCTCACGGAGCTGAATTTGAAGTGCATTAAGAGATTGTATGATGAGCAAGGGCTTAATGCAATGGATGAGCTGAGGAATAATATTCGAGGGGCTTTGCCTGTGTTGTTGAATCGGTTGAAGCAACAGGAAGAAGAACTGAAACAACGCCGATCATTTCTTAACCAAAAGTGGGCTCATCATATGAAAGTTTTTAATTGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

415

Amino Acids

48.19

Weight (kDa)

8.87

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	54 - 98	7.3e-12	Paired amphipathic helix repeat
PAH	PF02671	169 - 233	1.1e-07	Paired amphipathic helix repeat
Sin3_corepress	PF08295	252 - 341	5.9e-18	Sin3 family co-repressor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04950 FvH4_3g04950 FvH4_3g04950 FvH4_3g04950 FvH4_3g04950
malus_domestica	MD05G1277500.v1.1 MD10G1256700.v1.1
prunus_persica	Prupe.4G086800_v2.0.a1
pyrus_communis	pycom10g21250
rosa_chinensis	RchiOBHm_Chr5g0015031
rosa_laevigata	RLG00000032162
rosa_multiflora	Rmu_sc0004889.1_g000025
rosa_roxburghii	Rroxscaffold_1G00061510
rosa_rugosa	Rorug05G0023000 Rorug05G0023100
rosa_samantha	Rh5AG118200 Rh5BG115400 Rh5CG126700 Rh5DG114900
rosa_wichuraiana	Rw5G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1233
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	384
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	2 cut(s)	142, 803
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	2 cut(s)	661, 804
AcsI	RAATTY	1 cut(s)	1057
AcuI	CTGAAG	1 cut(s)	611
AfaI	GTAC	3 cut(s)	44, 607, 868
AfiI	CCNNNNNNNGG	1 cut(s)	1213
AflIII	ACRYGT	1 cut(s)	909
AjuI	GAANNNNNNNTTGG	2 cut(s)	349, 381
AluBI	AGCT	7 cut(s)	436, 625, 768, 823, 991, 1054, 1114
AluI	AGCT	7 cut(s)	436, 625, 768, 823, 991, 1054, 1114
Alw26I	GTCTC	2 cut(s)	295, 746
AlwI	GGATC	1 cut(s)	427
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	2 cut(s)	661, 804
ApeKI	GCWGC	1 cut(s)	991
ApoI	RAATTY	1 cut(s)	1057
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	384
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	7 cut(s)	218, 457, 512, 558, 579, 679, 964
AsuII	TTCGAA	1 cut(s)	936
BalI	TGGCCA	1 cut(s)	663
BanII	GRGCYC	1 cut(s)	1219
BbvCI	CCTCAGC	1 cut(s)	1115
BbvI	GCAGC	1 cut(s)	978
BccI	CCATC	4 cut(s)	55, 653, 670, 1027
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	2 cut(s)	295, 746
BfuAI	ACCTGC	1 cut(s)	1233
BglII	AGATCT	1 cut(s)	1026
BisI	GCNGC	2 cut(s)	804, 992
BlsI	GCNGC	2 cut(s)	805, 993
BmcAI	AGTACT	3 cut(s)	44, 607, 868
Bme1390I	CCNGG	1 cut(s)	668
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	2 cut(s)	129, 403
Bpu10I	CCTNAGC	1 cut(s)	1115
Bpu14I	TTCGAA	1 cut(s)	936
BpuEI	CTTGAG	1 cut(s)	816
BpuMI	CCSGG	1 cut(s)	668
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	745, 775
Bsc4I	CCNNNNNNNGG	1 cut(s)	1213
Bse3DI	GCAATG	1 cut(s)	1110
BseAI	TCCGGA	1 cut(s)	262
BseGI	GGATG	2 cut(s)	685, 1114
BseLI	CCNNNNNNNGG	1 cut(s)	1213
BseMI	GCAATG	1 cut(s)	1110
BseMII	CTCAG	2 cut(s)	741, 1106
BseRI	GAGGAG	5 cut(s)	108, 894, 897, 900, 903
BseXI	GCAGC	1 cut(s)	978
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	384
Bsh1285I	CGRYCG	1 cut(s)	818
BshFI	GGCC	2 cut(s)	663, 806
BsiEI	CGRYCG	1 cut(s)	818
BsiSI	CCGG	3 cut(s)	263, 600, 668
BslI	CCNNNNNNNGG	1 cut(s)	1213
BsmAI	GTCTC	2 cut(s)	295, 746
BsnI	GGCC	2 cut(s)	663, 806
Bsp119I	TTCGAA	1 cut(s)	936
Bsp1286I	GDGCHC	1 cut(s)	1219
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	8 cut(s)	8, 419, 447, 815, 844, 1026, 1039, 1193
BspACI	CCGC	2 cut(s)	142, 803
BspANI	GGCC	2 cut(s)	663, 806
BspCNI	CTCAG	2 cut(s)	740, 1107
BspEI	TCCGGA	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	384
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	1233
BspPI	GGATC	1 cut(s)	427
BspT104I	TTCGAA	1 cut(s)	936
BsrDI	GCAATG	1 cut(s)	1110
BssMI	GATC	8 cut(s)	8, 419, 447, 815, 844, 1026, 1039, 1193
Bst4CI	ACNGT	5 cut(s)	19, 215, 706, 773, 961
Bst6I	CTCTTC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstBI	TTCGAA	1 cut(s)	936
BstC8I	GCNNGC	1 cut(s)	825
BstDEI	CTNAG	3 cut(s)	432, 727, 1115
BstEII	GGTNACC	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	685, 1114
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	8 cut(s)	11, 422, 450, 818, 847, 1029, 1042, 1196
BstMAI	GTCTC	2 cut(s)	295, 746
BstMBI	GATC	8 cut(s)	8, 419, 447, 815, 844, 1026, 1039, 1193
BstMCI	CGRYCG	1 cut(s)	818
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 756, 765
BstNSI	RCATGY	1 cut(s)	913
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	666
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	978
BstX2I	RGATCY	2 cut(s)	419, 1026
BstYI	RGATCY	2 cut(s)	419, 1026
BsuRI	GGCC	2 cut(s)	663, 806
BtsCI	GGATG	2 cut(s)	685, 1114
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	4 cut(s)	211, 544, 711, 957
BveI	ACCTGC	1 cut(s)	1233
Cac8I	GCNNGC	1 cut(s)	825
CciI	TCATGA	1 cut(s)	81
CfoI	GCGC	1 cut(s)	384
Csp6I	GTAC	3 cut(s)	43, 606, 867
CviAII	CATG	3 cut(s)	82, 298, 910
CviQI	GTAC	3 cut(s)	43, 606, 867
DdeI	CTNAG	3 cut(s)	432, 727, 1115
DpnI	GATC	8 cut(s)	10, 421, 449, 817, 846, 1028, 1041, 1195
DpnII	GATC	8 cut(s)	8, 419, 447, 815, 844, 1026, 1039, 1193
EaeI	YGGCCR	2 cut(s)	661, 804
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	1219
Eco57I	CTGAAG	1 cut(s)	611
Eco91I	GGTNACC	1 cut(s)	206
EcoO65I	GGTNACC	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	1219
FaeI	CATG	3 cut(s)	85, 301, 913
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	3 cut(s)	81, 297, 909
FauNDI	CATATG	1 cut(s)	1224
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	804, 992
FokI	GGATG	2 cut(s)	692, 1121
FriOI	GRGCYC	1 cut(s)	1219
Fsp4HI	GCNGC	2 cut(s)	804, 992
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	2 cut(s)	804, 992
HaeIII	GGCC	2 cut(s)	663, 806
HapII	CCGG	3 cut(s)	263, 600, 668
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	85, 301, 913
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HindIII	AAGCTT	2 cut(s)	434, 821
HinfI	GANTC	2 cut(s)	428, 1153
HpaII	CCGG	3 cut(s)	263, 600, 668
HphI	GGTGA	7 cut(s)	218, 457, 512, 558, 579, 679, 964
Hpy166II	GTNNAC	5 cut(s)	53, 163, 460, 687, 955
Hpy188I	TCNGA	4 cut(s)	13, 630, 864, 1024
Hpy188III	TCNNGA	6 cut(s)	82, 263, 337, 369, 535, 876
Hpy8I	GTNNAC	5 cut(s)	53, 163, 460, 687, 955
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	8 cut(s)	103, 229, 248, 298, 491, 634, 726, 943
HpyCH4III	ACNGT	5 cut(s)	19, 215, 706, 773, 961
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	7 cut(s)	120, 241, 549, 759, 1068, 1103, 1242
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 756, 765
HpyF3I	CTNAG	3 cut(s)	432, 727, 1115
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	85, 301, 913
HspAI	GCGC	1 cut(s)	382
Kpn2I	TCCGGA	1 cut(s)	262
Kzo9I	GATC	8 cut(s)	8, 419, 447, 815, 844, 1026, 1039, 1193
LmnI	GCTCC	1 cut(s)	1051
Lsp1109I	GCAGC	1 cut(s)	978
LweI	GCATC	2 cut(s)	129, 403
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	8 cut(s)	10, 421, 449, 817, 846, 1028, 1041, 1195
MboI	GATC	8 cut(s)	8, 419, 447, 815, 844, 1026, 1039, 1193
MboII	GAAGA	6 cut(s)	50, 629, 935, 1049, 1184, 1187
MflI	RGATCY	2 cut(s)	419, 1026
MhlI	GDGCHC	1 cut(s)	1219
MlsI	TGGCCA	1 cut(s)	663
MluCI	AATT	6 cut(s)	309, 538, 580, 871, 1057, 1237
MluNI	TGGCCA	1 cut(s)	663
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	830
Mox20I	TGGCCA	1 cut(s)	663
MroI	TCCGGA	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	663
MseI	TTAA	6 cut(s)	312, 645, 1071, 1098, 1203, 1236
Msp20I	TGGCCA	1 cut(s)	663
MspI	CCGG	3 cut(s)	263, 600, 668
MspR9I	CCNGG	1 cut(s)	668
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	238, 756, 765
NciI	CCSGG	1 cut(s)	668
NdeI	CATATG	1 cut(s)	1224
NdeII	GATC	8 cut(s)	8, 419, 447, 815, 844, 1026, 1039, 1193
NlaIII	CATG	3 cut(s)	85, 301, 913
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	913
NspV	TTCGAA	1 cut(s)	936
PagI	TCATGA	1 cut(s)	81
PciI	ACATGT	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	1153
PkrI	GCNGC	2 cut(s)	805, 993
Ple19I	CGATCG	1 cut(s)	818
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PscI	ACATGT	1 cut(s)	909
PspEI	GGTNACC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	21
PsrI	GAACNNNNNNTAC	2 cut(s)	137, 169
PsuI	RGATCY	2 cut(s)	419, 1026
PvuI	CGATCG	1 cut(s)	818
RsaI	GTAC	3 cut(s)	44, 607, 868
RsaNI	GTAC	3 cut(s)	43, 606, 867
SaqAI	TTAA	6 cut(s)	312, 645, 1071, 1098, 1203, 1236
SatI	GCNGC	2 cut(s)	804, 992
Sau3AI	GATC	8 cut(s)	8, 419, 447, 815, 844, 1026, 1039, 1193
ScaI	AGTACT	3 cut(s)	44, 607, 868
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	1 cut(s)	1219
SfaNI	GCATC	2 cut(s)	129, 403
SfuI	TTCGAA	1 cut(s)	936
SmlI	CTYRAG	1 cut(s)	831
SmoI	CTYRAG	1 cut(s)	831
Sse9I	AATT	6 cut(s)	309, 538, 580, 871, 1057, 1237
SsiI	CCGC	2 cut(s)	142, 803
SspI	AATATT	1 cut(s)	1126
StyD4I	CCNGG	1 cut(s)	666
TaaI	ACNGT	5 cut(s)	19, 215, 706, 773, 961
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	8 cut(s)	7, 28, 123, 370, 657, 818, 936, 1129
TasI	AATT	6 cut(s)	309, 538, 580, 871, 1057, 1237
TatI	WGTACW	3 cut(s)	42, 605, 866
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	1 cut(s)	1153
Tru1I	TTAA	6 cut(s)	312, 645, 1071, 1098, 1203, 1236
Tru9I	TTAA	6 cut(s)	312, 645, 1071, 1098, 1203, 1236
TscAI	CASTG	4 cut(s)	218, 551, 711, 964
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	991
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	4 cut(s)	70, 200, 630, 1241
TspGWI	ACGGA	2 cut(s)	12, 1064
TspRI	CASTG	4 cut(s)	218, 551, 711, 964
XapI	RAATTY	1 cut(s)	1057
XceI	RCATGY	1 cut(s)	913
XmiI	GTMKAC	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	191
ZrmI	AGTACT	3 cut(s)	44, 607, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.