Rh5AG118200

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011537
Physical Location & Seq
Reverse (-)
10981061 .. 10984448
3388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG118200.1

Sequence Viewer

Length: 801 bp
ATGTCGTCCAACACTCACTCTCCGTGCGCCGCGTGCAAGTTTCTACGGCGGAAATGCACGCAGGAGTGCGTTTTCGCGCCGTACTTCCCGCCGGACCAGCCCCAGAAATTCGCCAACGTCCACCGTGTGTACGGCGCGAGCAACGTGGCCAAGATCCTCAACGAGCTCAACGCCGCCCACCGTGAGGACGCCGTGACGTCACTGGCCTATGAGGCTGAGGCTCGCCTCCGGGACCCCGTGTATGGCTGCGTGGGGCTCATCTCCATCCTCCAGAACAGGCTCAAGCAGCTCCAGACGGATCTCTACAATGCCAAGAAGGATCTCTCGACCTACATTGGCCCTCAAGCGCTGATGATTCCAGTGTTCCATCCGCAGCAGCCGGAGATGAATGGGGGTGGCACAATGTCTGTCCCCATGTTGGGAGTCCCAACTGGCCCCCAGCAGGGCGGACTTGCTGGGGGACAGTTGGTGATTAGGGATCAGCAGCAGCAGCAGCAGCAGCAGATGTTTGAGGCTCAGCAGCAGGAGTTGGTGAGGTTCAATGTGAATGGGATGGACAATGGAAATGGGTTTAATCAGATGGCTGGAGGAGGCGGTAGTGGTGGTGGAGGTAGTAATGGTGTGGTGTCAGCTGGCTCGTTGGGTCTGGGAGGTTTTGATAACAATGCTTTCAATAACCAGATGCAAGCTGCGGCCGCTGCACATCATCATCAGCATTCTCTTGACTATCAGCTTCAGGCTCAACTCATGCTCCAACCACAGCAGCAATCGCAGCCGAAATCAGAGGGTGAGGAGAGTTGA

Protein Analysis

266

Amino Acids

28.68

Weight (kDa)

6.22

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 105 3.9e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 200
AccII CGCG 3 cut(s) 32, 77, 137
AciI CCGC 9 cut(s) 30, 49, 89, 174, 371, 447, 594, 692, 696
AclWI GGATC 4 cut(s) 148, 306, 327, 486
AcoI YGGCCR 2 cut(s) 147, 693
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 719
AcyI GRCGYC 2 cut(s) 189, 197
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 2 cut(s) 83, 131
AfeI AGCGCT 1 cut(s) 348
AfiI CCNNNNNNNGG 6 cut(s) 184, 242, 418, 419, 442, 443
AgsI TTSAA 2 cut(s) 541, 673
AluBI AGCT 5 cut(s) 166, 289, 632, 689, 733
AluI AGCT 5 cut(s) 166, 289, 632, 689, 733
Alw21I GWGCWC 1 cut(s) 168
AlwI GGATC 4 cut(s) 148, 306, 327, 486
Aor51HI AGCGCT 1 cut(s) 348
AoxI GGCC 5 cut(s) 147, 204, 337, 433, 693
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 4 cut(s) 29, 79, 137, 349
AspS9I GGNCC 4 cut(s) 94, 232, 338, 434
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 481, 544, 800
AvaII GGWCC 2 cut(s) 94, 232
BalI TGGCCA 1 cut(s) 149
BanII GRGCYC 2 cut(s) 168, 258
Bbv12I GWGCWC 1 cut(s) 168
BbvCI CCTCAGC 1 cut(s) 216
BccI CCATC 4 cut(s) 272, 375, 547, 574
BceAI ACGGC 4 cut(s) 62, 64, 148, 176
BcnI CCSGG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 350
BglI GCCNNNNNGGC 1 cut(s) 212
BlpI GCTNAGC 1 cut(s) 516
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 94, 232
BmgT120I GGNCC 4 cut(s) 94, 232, 338, 434
BmiI GGNNCC 3 cut(s) 233, 234, 436
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 672
BpmI CTGGAG 3 cut(s) 254, 275, 606
Bpu10I CCTNAGC 1 cut(s) 216
Bpu1102I GCTNAGC 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 266, 327
BpuMI CCSGG 1 cut(s) 230
BsaHI GRCGYC 2 cut(s) 189, 197
BsaXI ACNNNNNCTCC 3 cut(s) 34, 735, 765
Bsc4I CCNNNNNNNGG 6 cut(s) 184, 242, 418, 419, 442, 443
Bse1I ACTGG 3 cut(s) 207, 359, 436
BseGI GGATG 3 cut(s) 264, 367, 558
BseLI CCNNNNNNNGG 6 cut(s) 184, 242, 418, 419, 442, 443
BseMII CTCAG 2 cut(s) 207, 530
BseNI ACTGG 3 cut(s) 207, 359, 436
BseRI GAGGAG 1 cut(s) 603
BseX3I CGGCCG 1 cut(s) 693
BseYI CCCAGC 2 cut(s) 438, 455
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 3 cut(s) 32, 77, 137
Bsh1285I CGRYCG 1 cut(s) 696
BshFI GGCC 5 cut(s) 149, 206, 339, 435, 695
BsiEI CGRYCG 1 cut(s) 696
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 3 cut(s) 92, 229, 380
BslFI GGGAC 4 cut(s) 245, 395, 410, 474
BslI CCNNNNNNNGG 6 cut(s) 184, 242, 418, 419, 442, 443
BsmFI GGGAC 4 cut(s) 245, 395, 410, 474
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 5 cut(s) 149, 206, 339, 435, 695
Bsp1286I GDGCHC 2 cut(s) 168, 258
Bsp143I GATC 4 cut(s) 153, 298, 319, 478
Bsp1720I GCTNAGC 1 cut(s) 516
BspACI CCGC 9 cut(s) 30, 49, 89, 174, 371, 447, 594, 692, 696
BspANI GGCC 5 cut(s) 149, 206, 339, 435, 695
BspCNI CTCAG 2 cut(s) 208, 529
BspFNI CGCG 3 cut(s) 32, 77, 137
BspLI GGNNCC 3 cut(s) 233, 234, 436
BspPI GGATC 4 cut(s) 148, 306, 327, 486
BsrI ACTGG 3 cut(s) 207, 359, 436
BssMI GATC 4 cut(s) 153, 298, 319, 478
BssNI GRCGYC 2 cut(s) 189, 197
Bst4CI ACNGT 3 cut(s) 125, 182, 465
BstACI GRCGYC 2 cut(s) 189, 197
BstC8I GCNNGC 6 cut(s) 34, 59, 139, 223, 634, 687
BstDEI CTNAG 2 cut(s) 216, 516
BstF5I GGATG 3 cut(s) 264, 367, 558
BstFNI CGCG 3 cut(s) 32, 77, 137
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 4 cut(s) 29, 79, 137, 349
BstKTI GATC 4 cut(s) 156, 301, 322, 481
BstMBI GATC 4 cut(s) 153, 298, 319, 478
BstMCI CGRYCG 1 cut(s) 696
BstSCI CCNGG 1 cut(s) 228
BstUI CGCG 3 cut(s) 32, 77, 137
BstX2I RGATCY 3 cut(s) 153, 298, 319
BstYI RGATCY 3 cut(s) 153, 298, 319
BstZI CGGCCG 1 cut(s) 693
BsuRI GGCC 5 cut(s) 149, 206, 339, 435, 695
BtsCI GGATG 3 cut(s) 264, 367, 558
BtsIMutI CAGTG 2 cut(s) 200, 366
Cac8I GCNNGC 6 cut(s) 34, 59, 139, 223, 634, 687
CciNI GCGGCCGC 1 cut(s) 693
CfoI GCGC 4 cut(s) 29, 79, 137, 349
Cfr13I GGNCC 4 cut(s) 94, 232, 338, 434
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 82, 130
CviAII CATG 2 cut(s) 415, 748
CviQI GTAC 2 cut(s) 82, 130
DdeI CTNAG 2 cut(s) 216, 516
DpnI GATC 4 cut(s) 155, 300, 321, 480
DpnII GATC 4 cut(s) 153, 298, 319, 478
DraIII CACNNNGTG 1 cut(s) 127
EaeI YGGCCR 2 cut(s) 147, 693
EagI CGGCCG 1 cut(s) 693
EciI GGCGGA 2 cut(s) 64, 462
Ecl136II GAGCTC 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 693
Eco24I GRGCYC 2 cut(s) 168, 258
Eco47I GGWCC 2 cut(s) 94, 232
Eco47III AGCGCT 1 cut(s) 348
Eco52I CGGCCG 1 cut(s) 693
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 719
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 232
EcoT38I GRGCYC 2 cut(s) 168, 258
FaeI CATG 2 cut(s) 418, 751
FaiI YATR 4 cut(s) 210, 243, 416, 749
FaqI GGGAC 4 cut(s) 245, 395, 410, 474
FatI CATG 2 cut(s) 414, 747
FauI CCCGC 1 cut(s) 96
FokI GGATG 3 cut(s) 251, 354, 565
FriOI GRGCYC 2 cut(s) 168, 258
GlaI GCGC 4 cut(s) 28, 78, 136, 348
GsaI CCCAGC 2 cut(s) 442, 459
GsuI CTGGAG 3 cut(s) 254, 275, 606
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 5 cut(s) 149, 206, 339, 435, 695
HapII CCGG 3 cut(s) 92, 229, 380
HgaI GACGC 1 cut(s) 197
HhaI GCGC 4 cut(s) 29, 79, 137, 349
Hin1I GRCGYC 2 cut(s) 189, 197
Hin1II CATG 2 cut(s) 418, 751
Hin6I GCGC 4 cut(s) 27, 77, 135, 347
HinP1I GCGC 4 cut(s) 27, 77, 135, 347
HinfI GANTC 2 cut(s) 355, 423
HpaII CCGG 3 cut(s) 92, 229, 380
HphI GGTGA 3 cut(s) 481, 544, 800
Hpy166II GTNNAC 2 cut(s) 121, 130
Hpy188I TCNGA 2 cut(s) 579, 784
Hpy188III TCNNGA 4 cut(s) 271, 292, 325, 722
Hpy8I GTNNAC 2 cut(s) 121, 130
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 3 cut(s) 125, 182, 465
HpyCH4IV ACGT 3 cut(s) 117, 144, 197
HpyCH4V TGCA 4 cut(s) 36, 57, 685, 701
HpyF3I CTNAG 2 cut(s) 216, 516
HpySE526I ACGT 3 cut(s) 117, 144, 197
Hsp92I GRCGYC 2 cut(s) 189, 197
Hsp92II CATG 2 cut(s) 418, 751
HspAI GCGC 4 cut(s) 27, 77, 135, 347
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 4 cut(s) 153, 298, 319, 478
LmnI GCTCC 2 cut(s) 294, 756
LweI GCATC 1 cut(s) 672
MaeII ACGT 3 cut(s) 117, 144, 197
MaeIII GTNAC 2 cut(s) 193, 198
MalI GATC 4 cut(s) 155, 300, 321, 480
MboI GATC 4 cut(s) 153, 298, 319, 478
MflI RGATCY 3 cut(s) 153, 298, 319
MhlI GDGCHC 2 cut(s) 168, 258
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 432
MmeI TCCRAC 2 cut(s) 33, 778
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
MseI TTAA 1 cut(s) 573
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 2 cut(s) 632, 698
MspI CCGG 3 cut(s) 92, 229, 380
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 715
MvnI CGCG 3 cut(s) 32, 77, 137
NciI CCSGG 1 cut(s) 230
NdeII GATC 4 cut(s) 153, 298, 319, 478
NlaIII CATG 2 cut(s) 418, 751
NlaIV GGNNCC 3 cut(s) 233, 234, 436
NmuCI GTSAC 2 cut(s) 193, 198
NotI GCGGCCGC 1 cut(s) 693
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 228
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 232
PspFI CCCAGC 2 cut(s) 438, 455
PspN4I GGNNCC 3 cut(s) 233, 234, 436
PspPI GGNCC 4 cut(s) 94, 232, 338, 434
PspPPI RGGWCCY 1 cut(s) 232
PsuI RGATCY 3 cut(s) 153, 298, 319
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 2 cut(s) 83, 131
RsaNI GTAC 2 cut(s) 82, 130
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 573
Sau3AI GATC 4 cut(s) 153, 298, 319, 478
Sau96I GGNCC 4 cut(s) 94, 232, 338, 434
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 168, 258
SfaNI GCATC 1 cut(s) 672
SinI GGWCC 2 cut(s) 94, 232
SmlI CTYRAG 2 cut(s) 281, 342
SmoI CTYRAG 2 cut(s) 281, 342
Sse9I AATT 1 cut(s) 107
SsiI CCGC 9 cut(s) 30, 49, 89, 174, 371, 447, 594, 692, 696
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 125, 182, 465
TaiI ACGT 3 cut(s) 120, 147, 200
TaqI TCGA 1 cut(s) 326
TasI AATT 1 cut(s) 107
TauI GCSGC 4 cut(s) 32, 176, 695, 698
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 2 cut(s) 207, 366
TseFI GTSAC 2 cut(s) 193, 198
Tsp45I GTSAC 2 cut(s) 193, 198
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 2 cut(s) 12, 311
TspRI CASTG 2 cut(s) 207, 366
VpaK11BI GGWCC 2 cut(s) 94, 232
XapI RAATTY 1 cut(s) 107
ZraI GACGTC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.