RchiOBHm_Chr5g0015031

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011537
Physical Location & Seq
Reverse (-)
10395096 .. 10397534
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29546

Sequence Viewer

Length: 795 bp
ATGTCGTCCAACACTCACTCTCCGTGCGCCGCGTGCAAGTTTCTACGGCGGAAATGCACGCAGGAGTGCGTTTTCGCGCCGTACTTCCCGCCGGACCAACCCCAGAAATTCGCCAACGTCCACCGTGTGTACGGCGCGAGCAACGTGGCCAAGATCCTCAACGAGCTCAACGCCGCCCACCGTGAGGACGCCGTGACGTCACTGGCCTATGAGGCGGAGGCTCGCCTCCGGGACCCCGTGTACGGCTGCGTGGGGCTCATCTCCATCCTCCAGAACAGGCTCAAGCAGCTCCAGACGGATCTCTACAATGCCAAGAAGGATCTCTCGACCTACATTGGCCCTCAAGCGCTGATGATTCCAGTGTTCCATCCGCAGCAGCCGGAGATGAATGGGGGTGGCACTATGTCTGTCCCCATGTTGGGAGTCCCAACTGGACCCCAGCAGGGCGGACTTGCTGGGGGACAGTTGGTGATTAGGGATCAGCAGCAGCAGCAGCAGATGTTTGAGGCTCAGCAGCAGGAGTTGGTGAGGTTCAATGTGAATGGGATGGACAATGGAAATGGGTTTAATCAGATGGCTGGAGGAGGCGGTAGTGGTGGTGGAGGTAGTAATGGTGTGGTGTCAGCTGGCTCGTTGGGTCTGGGAGGTTTTGATAACAATGCTTTCAATAACCAGATGCAAGCTGCGGCCGCTGCACATCATCATCAGCATTCTCTTGACTATCAGCTTCAGGCTCAACTCATGCTCCAACCACAGCAGCAATCGCAGCCGAAATCAGAGGGTGAGGAGAGTTGA

Protein Analysis

264

Amino Acids

28.43

Weight (kDa)

6.22

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 105 3.9e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 200
AccII CGCG 3 cut(s) 32, 77, 137
AclWI GGATC 4 cut(s) 148, 306, 327, 486
AcoI YGGCCR 2 cut(s) 147, 687
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 713
AcyI GRCGYC 2 cut(s) 189, 197
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 3 cut(s) 83, 131, 242
AfeI AGCGCT 1 cut(s) 348
AfiI CCNNNNNNNGG 5 cut(s) 184, 242, 418, 419, 443
AgsI TTSAA 2 cut(s) 535, 667
AluBI AGCT 5 cut(s) 166, 289, 626, 683, 727
AluI AGCT 5 cut(s) 166, 289, 626, 683, 727
Alw21I GWGCWC 1 cut(s) 168
AlwI GGATC 4 cut(s) 148, 306, 327, 486
Aor51HI AGCGCT 1 cut(s) 348
AoxI GGCC 4 cut(s) 147, 204, 337, 687
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 4 cut(s) 29, 79, 137, 349
AspS9I GGNCC 4 cut(s) 94, 232, 338, 434
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 481, 538, 794
AvaII GGWCC 3 cut(s) 94, 232, 434
BalI TGGCCA 1 cut(s) 149
BanII GRGCYC 2 cut(s) 168, 258
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 4 cut(s) 272, 375, 541, 568
BceAI ACGGC 5 cut(s) 62, 64, 148, 176, 259
BcnI CCSGG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 350
BglI GCCNNNNNGGC 1 cut(s) 212
BlpI GCTNAGC 1 cut(s) 510
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 3 cut(s) 94, 232, 434
BmgT120I GGNCC 4 cut(s) 94, 232, 338, 434
BmiI GGNNCC 3 cut(s) 233, 234, 436
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 666
BpmI CTGGAG 3 cut(s) 254, 275, 600
Bpu1102I GCTNAGC 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 266, 327
BpuMI CCSGG 1 cut(s) 230
BsaHI GRCGYC 2 cut(s) 189, 197
BsaXI ACNNNNNCTCC 3 cut(s) 34, 729, 759
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 242, 418, 419, 443
Bse1I ACTGG 3 cut(s) 207, 359, 436
BseGI GGATG 3 cut(s) 264, 367, 552
BseLI CCNNNNNNNGG 5 cut(s) 184, 242, 418, 419, 443
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 3 cut(s) 207, 359, 436
BseRI GAGGAG 1 cut(s) 597
BseX3I CGGCCG 1 cut(s) 687
BseYI CCCAGC 2 cut(s) 438, 455
BsgI GTGCAG 1 cut(s) 678
Bsh1236I CGCG 3 cut(s) 32, 77, 137
Bsh1285I CGRYCG 1 cut(s) 690
BshFI GGCC 4 cut(s) 149, 206, 339, 689
BsiEI CGRYCG 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 3 cut(s) 92, 229, 380
BslFI GGGAC 4 cut(s) 245, 395, 410, 474
BslI CCNNNNNNNGG 5 cut(s) 184, 242, 418, 419, 443
BsmFI GGGAC 4 cut(s) 245, 395, 410, 474
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 4 cut(s) 149, 206, 339, 689
Bsp1286I GDGCHC 2 cut(s) 168, 258
Bsp143I GATC 4 cut(s) 153, 298, 319, 478
Bsp1720I GCTNAGC 1 cut(s) 510
BspANI GGCC 4 cut(s) 149, 206, 339, 689
BspCNI CTCAG 1 cut(s) 523
BspFNI CGCG 3 cut(s) 32, 77, 137
BspLI GGNNCC 3 cut(s) 233, 234, 436
BspPI GGATC 4 cut(s) 148, 306, 327, 486
BsrI ACTGG 3 cut(s) 207, 359, 436
BssMI GATC 4 cut(s) 153, 298, 319, 478
BssNI GRCGYC 2 cut(s) 189, 197
Bst4CI ACNGT 3 cut(s) 125, 182, 465
BstACI GRCGYC 2 cut(s) 189, 197
BstC8I GCNNGC 6 cut(s) 34, 59, 139, 223, 628, 681
BstDEI CTNAG 1 cut(s) 510
BstF5I GGATG 3 cut(s) 264, 367, 552
BstFNI CGCG 3 cut(s) 32, 77, 137
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 4 cut(s) 29, 79, 137, 349
BstKTI GATC 4 cut(s) 156, 301, 322, 481
BstMBI GATC 4 cut(s) 153, 298, 319, 478
BstMCI CGRYCG 1 cut(s) 690
BstMWI GCNNNNNNNGC 9 cut(s) 33, 212, 286, 490, 493, 689, 692, 763, 766
BstSCI CCNGG 1 cut(s) 228
BstUI CGCG 3 cut(s) 32, 77, 137
BstX2I RGATCY 3 cut(s) 153, 298, 319
BstYI RGATCY 3 cut(s) 153, 298, 319
BstZI CGGCCG 1 cut(s) 687
BsuRI GGCC 4 cut(s) 149, 206, 339, 689
BtsCI GGATG 3 cut(s) 264, 367, 552
BtsIMutI CAGTG 2 cut(s) 200, 366
Cac8I GCNNGC 6 cut(s) 34, 59, 139, 223, 628, 681
CciNI GCGGCCGC 1 cut(s) 687
CfoI GCGC 4 cut(s) 29, 79, 137, 349
Cfr13I GGNCC 4 cut(s) 94, 232, 338, 434
CseI GACGC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 82, 130, 241
CviAII CATG 2 cut(s) 415, 742
CviQI GTAC 3 cut(s) 82, 130, 241
DdeI CTNAG 1 cut(s) 510
DpnI GATC 4 cut(s) 155, 300, 321, 480
DpnII GATC 4 cut(s) 153, 298, 319, 478
DraIII CACNNNGTG 1 cut(s) 127
EaeI YGGCCR 2 cut(s) 147, 687
EagI CGGCCG 1 cut(s) 687
EciI GGCGGA 3 cut(s) 64, 230, 462
Ecl136II GAGCTC 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 687
Eco24I GRGCYC 2 cut(s) 168, 258
Eco47I GGWCC 3 cut(s) 94, 232, 434
Eco47III AGCGCT 1 cut(s) 348
Eco52I CGGCCG 1 cut(s) 687
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 713
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 232
EcoT38I GRGCYC 2 cut(s) 168, 258
FaeI CATG 2 cut(s) 418, 745
FaiI YATR 4 cut(s) 210, 404, 416, 743
FaqI GGGAC 4 cut(s) 245, 395, 410, 474
FatI CATG 2 cut(s) 414, 741
FauI CCCGC 1 cut(s) 96
FokI GGATG 3 cut(s) 251, 354, 559
FriOI GRGCYC 2 cut(s) 168, 258
GlaI GCGC 4 cut(s) 28, 78, 136, 348
GsaI CCCAGC 2 cut(s) 442, 459
GsuI CTGGAG 3 cut(s) 254, 275, 600
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 4 cut(s) 149, 206, 339, 689
HapII CCGG 3 cut(s) 92, 229, 380
HgaI GACGC 1 cut(s) 197
HhaI GCGC 4 cut(s) 29, 79, 137, 349
Hin1I GRCGYC 2 cut(s) 189, 197
Hin1II CATG 2 cut(s) 418, 745
Hin6I GCGC 4 cut(s) 27, 77, 135, 347
HinP1I GCGC 4 cut(s) 27, 77, 135, 347
HinfI GANTC 2 cut(s) 355, 423
HpaII CCGG 3 cut(s) 92, 229, 380
HphI GGTGA 3 cut(s) 481, 538, 794
Hpy166II GTNNAC 3 cut(s) 121, 130, 241
Hpy188I TCNGA 2 cut(s) 573, 778
Hpy188III TCNNGA 4 cut(s) 271, 292, 325, 716
Hpy8I GTNNAC 3 cut(s) 121, 130, 241
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 3 cut(s) 125, 182, 465
HpyCH4IV ACGT 3 cut(s) 117, 144, 197
HpyCH4V TGCA 4 cut(s) 36, 57, 679, 695
HpyF10VI GCNNNNNNNGC 9 cut(s) 33, 212, 286, 490, 493, 689, 692, 763, 766
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 3 cut(s) 117, 144, 197
Hsp92I GRCGYC 2 cut(s) 189, 197
Hsp92II CATG 2 cut(s) 418, 745
HspAI GCGC 4 cut(s) 27, 77, 135, 347
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 4 cut(s) 153, 298, 319, 478
LmnI GCTCC 2 cut(s) 294, 750
LweI GCATC 1 cut(s) 666
MaeII ACGT 3 cut(s) 117, 144, 197
MaeIII GTNAC 2 cut(s) 193, 198
MalI GATC 4 cut(s) 155, 300, 321, 480
MboI GATC 4 cut(s) 153, 298, 319, 478
MflI RGATCY 3 cut(s) 153, 298, 319
MhlI GDGCHC 2 cut(s) 168, 258
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 432
MmeI TCCRAC 2 cut(s) 33, 772
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
MseI TTAA 1 cut(s) 567
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 2 cut(s) 626, 692
MspI CCGG 3 cut(s) 92, 229, 380
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 709
MvnI CGCG 3 cut(s) 32, 77, 137
MwoI GCNNNNNNNGC 9 cut(s) 33, 212, 286, 490, 493, 689, 692, 763, 766
NciI CCSGG 1 cut(s) 230
NdeII GATC 4 cut(s) 153, 298, 319, 478
NlaIII CATG 2 cut(s) 418, 745
NlaIV GGNNCC 3 cut(s) 233, 234, 436
NmuCI GTSAC 2 cut(s) 193, 198
NotI GCGGCCGC 1 cut(s) 687
PctI GAATGC 1 cut(s) 709
PfeI GAWTC 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 228
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 232
PspFI CCCAGC 2 cut(s) 438, 455
PspN4I GGNNCC 3 cut(s) 233, 234, 436
PspPI GGNCC 4 cut(s) 94, 232, 338, 434
PspPPI RGGWCCY 1 cut(s) 232
PsuI RGATCY 3 cut(s) 153, 298, 319
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 3 cut(s) 83, 131, 242
RsaNI GTAC 3 cut(s) 82, 130, 241
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 567
Sau3AI GATC 4 cut(s) 153, 298, 319, 478
Sau96I GGNCC 4 cut(s) 94, 232, 338, 434
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 168, 258
SfaNI GCATC 1 cut(s) 666
SinI GGWCC 3 cut(s) 94, 232, 434
SmlI CTYRAG 2 cut(s) 281, 342
SmoI CTYRAG 2 cut(s) 281, 342
Sse9I AATT 1 cut(s) 107
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 125, 182, 465
TaiI ACGT 3 cut(s) 120, 147, 200
TaqI TCGA 1 cut(s) 326
TasI AATT 1 cut(s) 107
TauI GCSGC 4 cut(s) 32, 176, 689, 692
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 2 cut(s) 207, 366
TseFI GTSAC 2 cut(s) 193, 198
Tsp45I GTSAC 2 cut(s) 193, 198
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 2 cut(s) 12, 311
TspRI CASTG 2 cut(s) 207, 366
VpaK11BI GGWCC 3 cut(s) 94, 232, 434
XapI RAATTY 1 cut(s) 107
ZraI GACGTC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.