Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011537

Physical Location & Seq

Genomic Coordinates Reverse (-)

4269215 .. 4271632

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G086800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCATCAAACACTCACTCACCTTGTGCTGCGTGCAAGTTTCTACGGCGAAAATGCACGCAAGAATGCGTGTTCGCGCCCTATTTCCCACCCGACCAGCCTCAGAAATTCGCAAACGTCCACCGGGTTTATGGTGCGAGCAACGTCGCCAAGATCCTGAATGAACTCAACGCAGCCCACCGAGAAGACGCGGTGACTTCACTGGCCTATGAGGCAGAGGCCCGCCTCAGGGACCCAGTGTACGGCTGTGTGGGTTTCATCTCAATTCTCCAGGGCAAGCTCAAGCAAATCCAGACTGACCTCTACAATGCCAAGAAGGACTTATCTGCCTACATTGGCCCTCAGGCATTGATGATACCAGTTTTTCACCCTTCCCAACAAACAGACCTAAATGCATCTGTGCCCATGTTGGGGATTTCCAATTGTCCTCCGCCCCAACATGGTTGCGGCGGAGGACAGCTGATGCAACAACAACAACAATTGTTCGAGGCTCATCAGCAAGAGCTTGTGAGGTATAATGTGAATGGGATGGATGCGGCGGCAGCGAATTCAGTTACTGGAAATGGGTTTAATCAGATGCATGCAGCTGCTGGTACTAATGGTGTGGTGTCAGCTGGTTCTTTGGGTTTGGGTGGCGGCTTTGACAACAACCCTTATAACCACCAGATGCAATCACAGCAAGCTGCTGCTGCTGCACATCATCAGCATTCTCTTGACTATCAGCTTCAAGCTCAACTCATGCTCCAGCCACACCAGGCCCAGCAATCACAGCTGAAATCGGAAGGGGAGGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

266

Amino Acids

28.72

Weight (kDa)

6.44

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04950 FvH4_3g04950 FvH4_3g04950 FvH4_3g04950 FvH4_3g04950
malus_domestica	MD05G1277500.v1.1 MD10G1256700.v1.1
prunus_persica	Prupe.4G086800_v2.0.a1
pyrus_communis	pycom10g21250
rosa_chinensis	RchiOBHm_Chr5g0015031
rosa_laevigata	RLG00000032162
rosa_multiflora	Rmu_sc0004889.1_g000025
rosa_roxburghii	Rroxscaffold_1G00061510
rosa_rugosa	Rorug05G0023000 Rorug05G0023100
rosa_samantha	Rh5AG118200 Rh5BG115400 Rh5CG126700 Rh5DG114900
rosa_wichuraiana	Rw5G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
AccII	CGCG	2 cut(s)	77, 191
AciI	CCGC	8 cut(s)	191, 223, 431, 447, 450, 536, 539, 636
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	107, 547
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	242, 595
AfiI	CCNNNNNNNGG	6 cut(s)	228, 229, 242, 410, 411, 440
AgsI	TTSAA	1 cut(s)	728
AjnI	CCWGG	2 cut(s)	270, 753
AluBI	AGCT	9 cut(s)	280, 460, 505, 587, 614, 683, 724, 731, 772
AluI	AGCT	9 cut(s)	280, 460, 505, 587, 614, 683, 724, 731, 772
AlwI	GGATC	1 cut(s)	148
AlwNI	CAGNNNCTG	2 cut(s)	557, 590
AoxI	GGCC	4 cut(s)	204, 219, 337, 756
ApeKI	GCWGC	9 cut(s)	29, 173, 542, 584, 587, 683, 686, 689, 692
ApoI	RAATTY	2 cut(s)	107, 547
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	4 cut(s)	220, 232, 338, 757
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	3 cut(s)	12, 205, 359
AvaII	GGWCC	1 cut(s)	232
AxyI	CCTNAGG	2 cut(s)	227, 342
BaeGI	GKGCMC	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	9 cut(s)	16, 185, 554, 574, 596, 670, 673, 676, 679
BccI	CCATC	1 cut(s)	523
BceAI	ACGGC	2 cut(s)	62, 259
BciT130I	CCWGG	2 cut(s)	272, 755
BcnI	CCSGG	1 cut(s)	125
BglI	GCCNNNNNGGC	1 cut(s)	212
Bme1390I	CCNGG	3 cut(s)	125, 272, 755
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	4 cut(s)	220, 232, 338, 757
BmiI	GGNNCC	2 cut(s)	233, 234
BmrFI	CCNGG	3 cut(s)	125, 272, 755
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	5 cut(s)	404, 453, 523, 567, 657
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	2 cut(s)	254, 728
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	6 cut(s)	228, 229, 242, 410, 411, 440
Bse1I	ACTGG	4 cut(s)	207, 236, 359, 562
Bse21I	CCTNAGG	2 cut(s)	227, 342
BseBI	CCWGG	2 cut(s)	272, 755
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	534, 538
BseLI	CCNNNNNNNGG	6 cut(s)	228, 229, 242, 410, 411, 440
BseMII	CTCAG	3 cut(s)	116, 241, 356
BseNI	ACTGG	4 cut(s)	207, 236, 359, 562
BseSI	GKGCMC	1 cut(s)	405
BseXI	GCAGC	9 cut(s)	16, 185, 554, 574, 596, 670, 673, 676, 679
BseYI	CCCAGC	1 cut(s)	759
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	2 cut(s)	77, 191
BshFI	GGCC	4 cut(s)	206, 221, 339, 758
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	6 cut(s)	228, 229, 242, 410, 411, 440
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	2 cut(s)	71, 706
BsnI	GGCC	4 cut(s)	206, 221, 339, 758
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	8 cut(s)	191, 223, 431, 447, 450, 536, 539, 636
BspANI	GGCC	4 cut(s)	206, 221, 339, 758
BspCNI	CTCAG	3 cut(s)	115, 240, 355
BspFNI	CGCG	2 cut(s)	77, 191
BspLI	GGNNCC	2 cut(s)	233, 234
BspPI	GGATC	1 cut(s)	148
BsrI	ACTGG	4 cut(s)	207, 236, 359, 562
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	272, 755
BstC8I	GCNNGC	7 cut(s)	34, 59, 139, 223, 278, 582, 681
BstDEI	CTNAG	3 cut(s)	102, 227, 342
BstF5I	GGATG	2 cut(s)	534, 538
BstFNI	CGCG	2 cut(s)	77, 191
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 542, 676, 689, 692, 769
BstNI	CCWGG	2 cut(s)	272, 755
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	3 cut(s)	123, 270, 753
BstSLI	GKGCMC	1 cut(s)	405
BstUI	CGCG	2 cut(s)	77, 191
BstV1I	GCAGC	9 cut(s)	16, 185, 554, 574, 596, 670, 673, 676, 679
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
Bsu36I	CCTNAGG	2 cut(s)	227, 342
BsuRI	GGCC	4 cut(s)	206, 221, 339, 758
BtsCI	GGATG	2 cut(s)	534, 538
BtsIMutI	CAGTG	2 cut(s)	200, 243
Cac8I	GCNNGC	7 cut(s)	34, 59, 139, 223, 278, 582, 681
CaiI	CAGNNNCTG	2 cut(s)	557, 590
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	4 cut(s)	220, 232, 338, 757
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	241, 594
CviAII	CATG	4 cut(s)	406, 440, 581, 739
CviQI	GTAC	2 cut(s)	241, 594
DdeI	CTNAG	3 cut(s)	102, 227, 342
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
DraIII	CACNNNGTG	1 cut(s)	26
EciI	GGCGGA	2 cut(s)	420, 465
Eco47I	GGWCC	1 cut(s)	232
Eco81I	CCTNAGG	2 cut(s)	227, 342
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	270, 753
EcoT22I	ATGCAT	2 cut(s)	397, 582
FaeI	CATG	4 cut(s)	409, 443, 584, 742
FaiI	YATR	8 cut(s)	132, 210, 407, 441, 516, 582, 657, 740
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	4 cut(s)	405, 439, 580, 738
FauI	CCCGC	1 cut(s)	230
FokI	GGATG	2 cut(s)	541, 545
GlaI	GCGC	1 cut(s)	78
GsaI	CCCAGC	1 cut(s)	763
GsuI	CTGGAG	2 cut(s)	254, 728
HaeIII	GGCC	4 cut(s)	206, 221, 339, 758
HapII	CCGG	1 cut(s)	124
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	4 cut(s)	409, 443, 584, 742
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	3 cut(s)	12, 205, 359
Hpy166II	GTNNAC	2 cut(s)	121, 241
Hpy188I	TCNGA	3 cut(s)	105, 576, 781
Hpy188III	TCNNGA	3 cut(s)	157, 292, 713
Hpy8I	GTNNAC	2 cut(s)	121, 241
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	310, 381, 776
HpyCH4IV	ACGT	2 cut(s)	117, 144
HpyCH4V	TGCA	8 cut(s)	36, 57, 395, 466, 580, 584, 670, 695
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 542, 676, 689, 692, 769
HpyF3I	CTNAG	3 cut(s)	102, 227, 342
HpySE526I	ACGT	2 cut(s)	117, 144
Hsp92II	CATG	4 cut(s)	409, 443, 584, 742
HspAI	GCGC	1 cut(s)	77
KflI	GGGWCCC	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	747
Lsp1109I	GCAGC	9 cut(s)	16, 185, 554, 574, 596, 670, 673, 676, 679
LweI	GCATC	5 cut(s)	404, 453, 523, 567, 657
MaeII	ACGT	2 cut(s)	117, 144
MaeIII	GTNAC	2 cut(s)	193, 553
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	197
MfeI	CAATTG	2 cut(s)	421, 479
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	5 cut(s)	107, 264, 421, 479, 547
Mph1103I	ATGCAT	2 cut(s)	397, 582
MseI	TTAA	1 cut(s)	570
MspA1I	CMGCKG	4 cut(s)	460, 587, 614, 772
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	3 cut(s)	125, 272, 755
MunI	CAATTG	2 cut(s)	421, 479
Mva1269I	GAATGC	2 cut(s)	71, 706
MvaI	CCWGG	2 cut(s)	272, 755
MvnI	CGCG	2 cut(s)	77, 191
MwoI	GCNNNNNNNGC	6 cut(s)	212, 542, 676, 689, 692, 769
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	4 cut(s)	409, 443, 584, 742
NlaIV	GGNNCC	2 cut(s)	233, 234
NmuCI	GTSAC	1 cut(s)	193
NsiI	ATGCAT	2 cut(s)	397, 582
NspI	RCATGY	1 cut(s)	584
PaeI	GCATGC	1 cut(s)	584
PctI	GAATGC	2 cut(s)	71, 706
PpuMI	RGGWCCY	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	657
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	270, 753
PspFI	CCCAGC	1 cut(s)	759
PspGI	CCWGG	2 cut(s)	270, 753
PspN4I	GGNNCC	2 cut(s)	233, 234
PspPI	GGNCC	4 cut(s)	220, 232, 338, 757
PspPPI	RGGWCCY	1 cut(s)	232
PstNI	CAGNNNCTG	2 cut(s)	557, 590
PsuI	RGATCY	1 cut(s)	153
PvuII	CAGCTG	4 cut(s)	460, 587, 614, 772
RsaI	GTAC	2 cut(s)	242, 595
RsaNI	GTAC	2 cut(s)	241, 594
SaqAI	TTAA	1 cut(s)	570
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	4 cut(s)	220, 232, 338, 757
ScrFI	CCNGG	3 cut(s)	125, 272, 755
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	5 cut(s)	404, 453, 523, 567, 657
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	5 cut(s)	107, 264, 421, 479, 547
SsiI	CCGC	8 cut(s)	191, 223, 431, 447, 450, 536, 539, 636
StyD4I	CCNGG	3 cut(s)	123, 270, 753
TaiI	ACGT	2 cut(s)	120, 147
TaqI	TCGA	1 cut(s)	486
TasI	AATT	5 cut(s)	107, 264, 421, 479, 547
TauI	GCSGC	4 cut(s)	450, 539, 542, 639
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	2 cut(s)	207, 243
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	9 cut(s)	29, 173, 542, 584, 587, 683, 686, 689, 692
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	177, 247
TspRI	CASTG	2 cut(s)	207, 243
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	107, 547
XceI	RCATGY	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
Zsp2I	ATGCAT	2 cut(s)	397, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.