RLG00000032162

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011537
Physical Location & Seq
Reverse (-)
11566365 .. 11567162
798 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032162

Sequence Viewer

Length: 798 bp
ATGTCGTCCAACACTCACTCTCCGTGCGCCGCGTGCAAGTTTCTCCGGCGGAAATGCACGCAGGAGTGCGTTTTCGCGCCGTACTTCCCGCCGGACCAGCCCCAGAAATTCGCCAACGTCCACCGTGTGTACGGCGCGAGCAACGTGGCCAAGATCCTCAACGAGCTCAACGCCGCCCACCGTGAGGACGCCGTGACGTCACTGGCCTATGAGGCGGAGGCTCGCCTCCGGGACCCGGTGTACGGCTGCGTGGGGCTCATCTCCATCCTCCAGAACAGGCTCAAGCAGCTCCAGACGGATCTCTACAATGCCAAGAAGGATCTCTCGACCTACATCGGCCCTCAAGCGCTGATGATTCCAGTGTTCCATCCGCAGCAGCCGGAGATGAATGGGGGTGGCACAATGTCTGTCCCCATGTTGGGAGTCCCAACTGGCCCGCAGCAGCAGCAGGGCGGACTTGCTGGGGGACAGTTGGTGATTAGGGATCAGCAGCAGCAGCAGATGTTTGAGGCTCAGCAGCAGGAGCTGGTCAGGTTCAATGTGAATGGGATGGACAATGGAAATGGGTTTAATCAGATGGCTGGAGGAGGCGGTAGTGGTGGTGGAGGTAGTAATGGTGTAGTGTCAGCTGGCTCGATGGGTCTGGGAGGTTTTGATAACAATGCTTTCAATAACCAGATGCAAGCTGCTGCCGCTGCACATCATCATCAGCATTCTCTTGACTATCAGCTTCAGGCTCAGCTCATGCTCCAACCACAGCAGCAATCGCAGCCGAAATCAGAGGGCGAGGAGAGTTGA

Protein Analysis

266

Amino Acids

28.57

Weight (kDa)

6.22

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 105 3.9e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 200
AccII CGCG 3 cut(s) 32, 77, 137
AclWI GGATC 4 cut(s) 148, 306, 327, 492
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 716
AcyI GRCGYC 2 cut(s) 189, 197
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 3 cut(s) 83, 131, 242
AfeI AGCGCT 1 cut(s) 348
AfiI CCNNNNNNNGG 5 cut(s) 184, 235, 242, 418, 419
AgsI TTSAA 2 cut(s) 538, 670
AluBI AGCT 7 cut(s) 166, 289, 526, 629, 686, 730, 742
AluI AGCT 7 cut(s) 166, 289, 526, 629, 686, 730, 742
Alw21I GWGCWC 1 cut(s) 168
AlwI GGATC 4 cut(s) 148, 306, 327, 492
AlwNI CAGNNNCTG 1 cut(s) 526
Aor51HI AGCGCT 1 cut(s) 348
AoxI GGCC 4 cut(s) 147, 204, 337, 433
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 4 cut(s) 29, 79, 137, 349
AspS9I GGNCC 4 cut(s) 94, 232, 338, 434
AsuC2I CCSGG 2 cut(s) 230, 236
AsuHPI GGTGA 1 cut(s) 487
AvaII GGWCC 2 cut(s) 94, 232
BalI TGGCCA 1 cut(s) 149
BanII GRGCYC 2 cut(s) 168, 258
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 5 cut(s) 272, 375, 544, 571, 631
BceAI ACGGC 4 cut(s) 64, 148, 176, 259
BcnI CCSGG 2 cut(s) 230, 236
BfoI RGCGCY 1 cut(s) 350
BglI GCCNNNNNGGC 1 cut(s) 212
BlpI GCTNAGC 2 cut(s) 513, 738
Bme1390I CCNGG 2 cut(s) 230, 236
Bme18I GGWCC 2 cut(s) 94, 232
BmgT120I GGNCC 4 cut(s) 94, 232, 338, 434
BmiI GGNNCC 2 cut(s) 233, 234
BmrFI CCNGG 2 cut(s) 230, 236
BmsI GCATC 1 cut(s) 669
BpmI CTGGAG 3 cut(s) 254, 275, 603
Bpu1102I GCTNAGC 2 cut(s) 513, 738
BpuEI CTTGAG 2 cut(s) 266, 327
BpuMI CCSGG 2 cut(s) 230, 236
BsaHI GRCGYC 2 cut(s) 189, 197
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 235, 242, 418, 419
Bse1I ACTGG 3 cut(s) 207, 359, 436
BseGI GGATG 3 cut(s) 264, 367, 555
BseLI CCNNNNNNNGG 5 cut(s) 184, 235, 242, 418, 419
BseMII CTCAG 2 cut(s) 527, 752
BseNI ACTGG 3 cut(s) 207, 359, 436
BseRI GAGGAG 1 cut(s) 600
BseYI CCCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 681
Bsh1236I CGCG 3 cut(s) 32, 77, 137
BshFI GGCC 4 cut(s) 149, 206, 339, 435
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 5 cut(s) 46, 92, 229, 236, 380
BslFI GGGAC 4 cut(s) 245, 395, 410, 480
BslI CCNNNNNNNGG 5 cut(s) 184, 235, 242, 418, 419
BsmFI GGGAC 4 cut(s) 245, 395, 410, 480
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 4 cut(s) 149, 206, 339, 435
Bsp1286I GDGCHC 2 cut(s) 168, 258
Bsp143I GATC 4 cut(s) 153, 298, 319, 484
Bsp1720I GCTNAGC 2 cut(s) 513, 738
BspANI GGCC 4 cut(s) 149, 206, 339, 435
BspCNI CTCAG 2 cut(s) 526, 751
BspFNI CGCG 3 cut(s) 32, 77, 137
BspLI GGNNCC 2 cut(s) 233, 234
BspPI GGATC 4 cut(s) 148, 306, 327, 492
BsrI ACTGG 3 cut(s) 207, 359, 436
BssMI GATC 4 cut(s) 153, 298, 319, 484
BssNI GRCGYC 2 cut(s) 189, 197
Bst4CI ACNGT 3 cut(s) 125, 182, 471
BstACI GRCGYC 2 cut(s) 189, 197
BstC8I GCNNGC 7 cut(s) 34, 59, 139, 223, 437, 631, 684
BstDEI CTNAG 2 cut(s) 513, 738
BstF5I GGATG 3 cut(s) 264, 367, 555
BstFNI CGCG 3 cut(s) 32, 77, 137
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 4 cut(s) 29, 79, 137, 349
BstKTI GATC 4 cut(s) 156, 301, 322, 487
BstMBI GATC 4 cut(s) 153, 298, 319, 484
BstSCI CCNGG 2 cut(s) 228, 234
BstUI CGCG 3 cut(s) 32, 77, 137
BstX2I RGATCY 3 cut(s) 153, 298, 319
BstYI RGATCY 3 cut(s) 153, 298, 319
BsuRI GGCC 4 cut(s) 149, 206, 339, 435
BtsCI GGATG 3 cut(s) 264, 367, 555
BtsIMutI CAGTG 2 cut(s) 200, 366
Cac8I GCNNGC 7 cut(s) 34, 59, 139, 223, 437, 631, 684
CaiI CAGNNNCTG 1 cut(s) 526
CfoI GCGC 4 cut(s) 29, 79, 137, 349
Cfr13I GGNCC 4 cut(s) 94, 232, 338, 434
CseI GACGC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 82, 130, 241
CviAII CATG 2 cut(s) 415, 745
CviQI GTAC 3 cut(s) 82, 130, 241
DdeI CTNAG 2 cut(s) 513, 738
DpnI GATC 4 cut(s) 155, 300, 321, 486
DpnII GATC 4 cut(s) 153, 298, 319, 484
DraIII CACNNNGTG 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 147
EciI GGCGGA 3 cut(s) 64, 230, 468
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 168, 258
Eco47I GGWCC 2 cut(s) 94, 232
Eco47III AGCGCT 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 716
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 232
EcoT38I GRGCYC 2 cut(s) 168, 258
FaeI CATG 2 cut(s) 418, 748
FaiI YATR 3 cut(s) 210, 416, 746
FaqI GGGAC 4 cut(s) 245, 395, 410, 480
FatI CATG 2 cut(s) 414, 744
FauI CCCGC 2 cut(s) 96, 444
FokI GGATG 3 cut(s) 251, 354, 562
FriOI GRGCYC 2 cut(s) 168, 258
GlaI GCGC 4 cut(s) 28, 78, 136, 348
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 3 cut(s) 254, 275, 603
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 4 cut(s) 149, 206, 339, 435
HapII CCGG 5 cut(s) 46, 92, 229, 236, 380
HgaI GACGC 1 cut(s) 197
HhaI GCGC 4 cut(s) 29, 79, 137, 349
Hin1I GRCGYC 2 cut(s) 189, 197
Hin1II CATG 2 cut(s) 418, 748
Hin6I GCGC 4 cut(s) 27, 77, 135, 347
HinP1I GCGC 4 cut(s) 27, 77, 135, 347
HinfI GANTC 2 cut(s) 355, 423
HpaII CCGG 5 cut(s) 46, 92, 229, 236, 380
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 3 cut(s) 121, 130, 241
Hpy188I TCNGA 2 cut(s) 576, 781
Hpy188III TCNNGA 4 cut(s) 271, 292, 325, 719
Hpy8I GTNNAC 3 cut(s) 121, 130, 241
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 3 cut(s) 125, 182, 471
HpyCH4IV ACGT 3 cut(s) 117, 144, 197
HpyCH4V TGCA 4 cut(s) 36, 57, 682, 698
HpyF3I CTNAG 2 cut(s) 513, 738
HpySE526I ACGT 3 cut(s) 117, 144, 197
Hsp92I GRCGYC 2 cut(s) 189, 197
Hsp92II CATG 2 cut(s) 418, 748
HspAI GCGC 4 cut(s) 27, 77, 135, 347
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 4 cut(s) 153, 298, 319, 484
LmnI GCTCC 3 cut(s) 294, 523, 753
LweI GCATC 1 cut(s) 669
MaeII ACGT 3 cut(s) 117, 144, 197
MaeIII GTNAC 2 cut(s) 193, 198
MalI GATC 4 cut(s) 155, 300, 321, 486
MboI GATC 4 cut(s) 153, 298, 319, 484
MflI RGATCY 3 cut(s) 153, 298, 319
MhlI GDGCHC 2 cut(s) 168, 258
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 432
MmeI TCCRAC 2 cut(s) 33, 775
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
MseI TTAA 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 2 cut(s) 629, 695
MspI CCGG 5 cut(s) 46, 92, 229, 236, 380
MspR9I CCNGG 2 cut(s) 230, 236
Mva1269I GAATGC 1 cut(s) 712
MvnI CGCG 3 cut(s) 32, 77, 137
NciI CCSGG 2 cut(s) 230, 236
NdeII GATC 4 cut(s) 153, 298, 319, 484
NlaIII CATG 2 cut(s) 418, 748
NlaIV GGNNCC 2 cut(s) 233, 234
NmuCI GTSAC 2 cut(s) 193, 198
PctI GAATGC 1 cut(s) 712
PfeI GAWTC 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 228
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 461
PspN4I GGNNCC 2 cut(s) 233, 234
PspPI GGNCC 4 cut(s) 94, 232, 338, 434
PspPPI RGGWCCY 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 526
PsuI RGATCY 3 cut(s) 153, 298, 319
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 3 cut(s) 83, 131, 242
RsaNI GTAC 3 cut(s) 82, 130, 241
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 570
Sau3AI GATC 4 cut(s) 153, 298, 319, 484
Sau96I GGNCC 4 cut(s) 94, 232, 338, 434
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 2 cut(s) 230, 236
SduI GDGCHC 2 cut(s) 168, 258
SfaNI GCATC 1 cut(s) 669
SinI GGWCC 2 cut(s) 94, 232
SmlI CTYRAG 2 cut(s) 281, 342
SmoI CTYRAG 2 cut(s) 281, 342
Sse9I AATT 1 cut(s) 107
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 228, 234
TaaI ACNGT 3 cut(s) 125, 182, 471
TaiI ACGT 3 cut(s) 120, 147, 200
TaqI TCGA 2 cut(s) 326, 635
TasI AATT 1 cut(s) 107
TauI GCSGC 3 cut(s) 32, 176, 695
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 2 cut(s) 207, 366
TseFI GTSAC 2 cut(s) 193, 198
Tsp45I GTSAC 2 cut(s) 193, 198
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 2 cut(s) 12, 311
TspRI CASTG 2 cut(s) 207, 366
VpaK11BI GGWCC 2 cut(s) 94, 232
XapI RAATTY 1 cut(s) 107
ZraI GACGTC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.