FvH4_3g05380

Protein of unknown function (DUF1365)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
3124179 .. 3127316
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05380.t2

Sequence Viewer

Length: 924 bp
ATGGAGCTTCTCTATCTGCTCTGTTCAATCCTCTCCACCTTCCTCACTTCCCTCACTCTCTCCCTCCTCCTCCCGCTCCGCACGCTCCTCCGCCGCCTCTCCCCCTCACGCGCCGCCTCTTCCTCCGTCTCCCTCTACCAAGGCACCGTCTTTCACCAGCGTCGCCGCCCCGTCCACCACTCCTTCCGCTACTCCGTCCGCTACGCCCTCATCGACCTCGACGACGCCCCCCACGCGCTCCCCAACCACCTCTCCGCCGACGAGGCTCGCCGCATTGCCGGCACCTCCGGCCGAACTTTGCTTTTGACGATTCCGGAAAGCGTGGGGTATGAGCAGAACCCGTTGAGCTTGTACTACTGCTATGATGATCCGATTTTGAAGAAATGCATTGCTGAGGTAACGAATACGCCATGGGGAGAAAGGGTGTTGTTTGTTTTCGATCCAGATTCTGATTTAGTGGCTAAACCACTGCATGTCAGTCCTTTTATGGACATGTTGGGGAATTGGAGTATCAAAGCAAATGCTCCTGATGATACGCTGTTTGTTTCAATTTCAGTTCAACACCCTGACCTCGGAAACTATTTTACAGCTACCCTTAAAGCTAATAGGGTACCCTCATCATTGGTGTCTGATCATGCACTGTTTTTCTGGTTGATGCCACATAAGGTTGCAGTGTGGATATATTGGCATGCCTTAAAACTGTGGTGGAAGAATGTGGCATTTGTCCAACACCCAAGGTATACAAACCCTGCATATAGGGATGAAGCTGTGGTTCGTAACCAGAAACTTCAGTGCTGTCCGGCTATTCGATTGAACAAAGATAAACATCAGCAACTTGAAGGAGGGAGTCAAGGATGTATGGTTAACAAAGAAAGTGAGCCTCGTTATATCAAATGGAGAGATGCTAAGTGGCCTTGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

308

Amino Acids

35.26

Weight (kDa)

9.06

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1365 PF07103 45 - 79 4e-08 Protein of unknown function (DUF1365)
DUF1365 PF07103 95 - 164 2.2e-18 Protein of unknown function (DUF1365)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30130 AT1G30130 AT1G30130
fragaria_vesca FvH4_3g05380 FvH4_3g05380
malus_domestica MD05G1282500.v1.1
prunus_persica Prupe.4G082300_v2.0.a1
pyrus_communis pycom10g21690
rosa_chinensis RchiOBHm_Chr5g0014371
rosa_laevigata RLG00000032102
rosa_multiflora Rmu_sc0000659.1_g000041
rosa_roxburghii Rroxscaffold_1G00062220
rosa_rugosa Rorug05G0017600
rosa_samantha Rh5AG112300 Rh5BG109000 Rh5CG120800 Rh5DG108000
rosa_wichuraiana Rw5G009740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 610
AccB1I GGYRCC 3 cut(s) 143, 281, 610
AccBSI CCGCTC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 740
AccII CGCG 2 cut(s) 111, 236
AccIII TCCGGA 1 cut(s) 313
AclWI GGATC 2 cut(s) 362, 434
AcoI YGGCCR 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 773
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 2 cut(s) 353, 612
AfiI CCNNNNNNNGG 1 cut(s) 572
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 6 cut(s) 27, 379, 549, 560, 814, 839
AluBI AGCT 5 cut(s) 7, 348, 590, 602, 767
AluI AGCT 5 cut(s) 7, 348, 590, 602, 767
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 2 cut(s) 362, 434
AlwNI CAGNNNCTG 1 cut(s) 449
Aor13HI TCCGGA 1 cut(s) 313
AoxI GGCC 2 cut(s) 289, 911
Asp718I GGTACC 1 cut(s) 610
AspLEI GCGC 2 cut(s) 113, 238
AsuHPI GGTGA 1 cut(s) 146
BanI GGYRCC 3 cut(s) 143, 281, 610
BbvCI CCTCAGC 1 cut(s) 393
BclI TGATCA 1 cut(s) 631
BcoDI GTCTC 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 4 cut(s) 94, 114, 166, 271
BlsI GCNGC 4 cut(s) 95, 115, 167, 272
BmiI GGNNCC 3 cut(s) 145, 283, 612
BmsI GCATC 2 cut(s) 645, 892
Bpu10I CCTNAGC 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 825
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 5 cut(s) 139, 410, 571, 734, 914
BsaWI WCCGGW 1 cut(s) 313
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse118I RCCGGY 1 cut(s) 278
Bse3DI GCAATG 2 cut(s) 273, 387
Bse8I GATNNNNATC 1 cut(s) 825
BseAI TCCGGA 1 cut(s) 313
BseDI CCNNGG 5 cut(s) 139, 410, 571, 734, 914
BseGI GGATG 2 cut(s) 766, 860
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMI GCAATG 2 cut(s) 273, 387
BseMII CTCAG 1 cut(s) 384
BseRI GAGGAG 3 cut(s) 56, 59, 77
BseX3I CGGCCG 1 cut(s) 289
Bsh1236I CGCG 2 cut(s) 111, 236
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 2 cut(s) 291, 913
BshNI GGYRCC 3 cut(s) 143, 281, 610
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 4 cut(s) 279, 288, 314, 800
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 1 cut(s) 133
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 2 cut(s) 291, 913
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 3 cut(s) 367, 439, 631
Bsp19I CCATGG 1 cut(s) 410
BspANI GGCC 2 cut(s) 291, 913
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 313
BspFNI CGCG 2 cut(s) 111, 236
BspLI GGNNCC 3 cut(s) 145, 283, 612
BspPI GGATC 2 cut(s) 362, 434
BspT107I GGYRCC 3 cut(s) 143, 281, 610
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 2 cut(s) 273, 387
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 5 cut(s) 139, 410, 571, 734, 914
BssMI GATC 3 cut(s) 367, 439, 631
BssNAI GTATAC 1 cut(s) 741
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 4 cut(s) 139, 410, 734, 914
Bst1107I GTATAC 1 cut(s) 741
Bst4CI ACNGT 3 cut(s) 148, 642, 702
Bst6I CTCTTC 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 4 cut(s) 83, 268, 280, 690
BstDEI CTNAG 2 cut(s) 393, 906
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 2 cut(s) 766, 860
BstFNI CGCG 2 cut(s) 111, 236
BstHHI GCGC 2 cut(s) 113, 238
BstKTI GATC 3 cut(s) 370, 442, 634
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 3 cut(s) 367, 439, 631
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 5 cut(s) 82, 233, 263, 279, 288
BstNSI RCATGY 3 cut(s) 476, 496, 692
BstUI CGCG 2 cut(s) 111, 236
BstZ17I GTATAC 1 cut(s) 741
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 2 cut(s) 291, 913
BtgI CCRYGG 1 cut(s) 410
BtsCI GGATG 2 cut(s) 766, 860
BtsI GCAGTG 2 cut(s) 467, 678
BtsIMutI CAGTG 4 cut(s) 467, 638, 678, 797
Cac8I GCNNGC 4 cut(s) 83, 268, 280, 690
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 2 cut(s) 113, 238
Cfr10I RCCGGY 1 cut(s) 278
CseI GACGC 2 cut(s) 149, 233
Csp6I GTAC 2 cut(s) 352, 611
CviAII CATG 5 cut(s) 411, 473, 493, 635, 689
CviQI GTAC 2 cut(s) 352, 611
DdeI CTNAG 2 cut(s) 393, 906
DpnI GATC 3 cut(s) 369, 441, 633
DpnII GATC 3 cut(s) 367, 439, 631
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
EciI GGCGGA 2 cut(s) 80, 244
EclXI CGGCCG 1 cut(s) 289
Eco130I CCWWGG 4 cut(s) 139, 410, 734, 914
Eco52I CGGCCG 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 773
EcoT14I CCWWGG 4 cut(s) 139, 410, 734, 914
EcoT22I ATGCAT 1 cut(s) 389
ErhI CCWWGG 4 cut(s) 139, 410, 734, 914
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 5 cut(s) 414, 476, 496, 638, 692
FatI CATG 5 cut(s) 410, 472, 492, 634, 688
FauI CCCGC 1 cut(s) 81
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 740
Fnu4HI GCNGC 4 cut(s) 94, 114, 166, 271
FokI GGATG 2 cut(s) 773, 867
Fsp4HI GCNGC 4 cut(s) 94, 114, 166, 271
GlaI GCGC 2 cut(s) 112, 237
GluI GCNGC 4 cut(s) 94, 114, 166, 271
HaeIII GGCC 2 cut(s) 291, 913
HapII CCGG 4 cut(s) 279, 288, 314, 800
HgaI GACGC 2 cut(s) 149, 233
HhaI GCGC 2 cut(s) 113, 238
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 5 cut(s) 414, 476, 496, 638, 692
Hin6I GCGC 2 cut(s) 111, 236
HinP1I GCGC 2 cut(s) 111, 236
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HinfI GANTC 3 cut(s) 310, 446, 847
HpaI GTTAAC 1 cut(s) 865
HpaII CCGG 4 cut(s) 279, 288, 314, 800
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 3 cut(s) 175, 741, 865
Hpy188I TCNGA 4 cut(s) 372, 451, 575, 631
Hpy188III TCNNGA 4 cut(s) 314, 443, 527, 921
Hpy8I GTNNAC 3 cut(s) 175, 741, 865
Hpy99I CGWCG 4 cut(s) 165, 224, 227, 263
HpyAV CCTTC 3 cut(s) 49, 193, 833
HpyCH4III ACNGT 3 cut(s) 148, 642, 702
HpyCH4V TGCA 5 cut(s) 387, 472, 638, 671, 752
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 233, 263, 279, 288
HpyF3I CTNAG 2 cut(s) 393, 906
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 5 cut(s) 414, 476, 496, 638, 692
HspAI GCGC 2 cut(s) 111, 236
Kpn2I TCCGGA 1 cut(s) 313
KpnI GGTACC 1 cut(s) 614
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 631
KspAI GTTAAC 1 cut(s) 865
Kzo9I GATC 3 cut(s) 367, 439, 631
LmnI GCTCC 5 cut(s) 4, 81, 90, 243, 529
LweI GCATC 2 cut(s) 645, 892
MaeIII GTNAC 2 cut(s) 397, 776
MalI GATC 3 cut(s) 369, 441, 633
MbiI CCGCTC 1 cut(s) 76
MboI GATC 3 cut(s) 367, 439, 631
MboII GAAGA 3 cut(s) 111, 391, 721
MluCI AATT 2 cut(s) 502, 549
MlyI GAGTC 1 cut(s) 856
MmeI TCCRAC 1 cut(s) 751
Mph1103I ATGCAT 1 cut(s) 389
MroI TCCGGA 1 cut(s) 313
MroNI GCCGGC 1 cut(s) 278
MseI TTAA 3 cut(s) 597, 695, 864
MspI CCGG 4 cut(s) 279, 288, 314, 800
MvnI CGCG 2 cut(s) 111, 236
MwoI GCNNNNNNNGC 5 cut(s) 82, 233, 263, 279, 288
NaeI GCCGGC 1 cut(s) 280
NcoI CCATGG 1 cut(s) 410
NdeII GATC 3 cut(s) 367, 439, 631
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 5 cut(s) 414, 476, 496, 638, 692
NlaIV GGNNCC 3 cut(s) 145, 283, 612
NsiI ATGCAT 1 cut(s) 389
NspI RCATGY 3 cut(s) 476, 496, 692
PaeI GCATGC 1 cut(s) 692
PciI ACATGT 1 cut(s) 492
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 219
PdiI GCCGGC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 310, 446
PkrI GCNGC 4 cut(s) 95, 115, 167, 272
PleI GAGTC 1 cut(s) 855
PpsI GAGTC 1 cut(s) 855
PscI ACATGT 1 cut(s) 492
PspN4I GGNNCC 3 cut(s) 145, 283, 612
PstNI CAGNNNCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 353, 612
RsaNI GTAC 2 cut(s) 352, 611
SaqAI TTAA 3 cut(s) 597, 695, 864
SatI GCNGC 4 cut(s) 94, 114, 166, 271
Sau3AI GATC 3 cut(s) 367, 439, 631
SchI GAGTC 1 cut(s) 856
SfaNI GCATC 2 cut(s) 645, 892
SphI GCATGC 1 cut(s) 692
Sse9I AATT 2 cut(s) 502, 549
StyI CCWWGG 4 cut(s) 139, 410, 734, 914
TaaI ACNGT 3 cut(s) 148, 642, 702
TaqI TCGA 4 cut(s) 213, 219, 438, 808
TasI AATT 2 cut(s) 502, 549
TatI WGTACW 1 cut(s) 351
TauI GCSGC 4 cut(s) 96, 116, 168, 273
TfiI GAWTC 2 cut(s) 310, 446
Tru1I TTAA 3 cut(s) 597, 695, 864
Tru9I TTAA 3 cut(s) 597, 695, 864
TscAI CASTG 4 cut(s) 474, 645, 678, 797
TspDTI ATGAA 1 cut(s) 777
TspGWI ACGGA 2 cut(s) 115, 184
TspRI CASTG 4 cut(s) 474, 645, 678, 797
XceI RCATGY 3 cut(s) 476, 496, 692
XmiI GTMKAC 1 cut(s) 740
Zsp2I ATGCAT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.