RchiOBHm_Chr5g0014371

Protein of unknown function (DUF1365)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
9844847 .. 9847831
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29482

Sequence Viewer

Length: 927 bp
ATGGAGTTTCTCTATCTGCTCTGCTCAATCCTCTCCACCTTCCTCACTTCCCTCACACTCTCTCTCCTCCTCCCACTCCGCACTCTCCTCCGCCGCCTCTCCCCCTCACGCGCCGCCTCTCCCTCCTCCGTCTCCCTCTACCAAGGCACCGTCTTTCACGAGCGTCGCCGCCCCGTCCGCCACTCCTTCCGCTACTCCGTCCGCTACGCTCTCATCGACCTCGACGACTCTCCCCGCGCGCTCCCCAACCACCTCTCCGCCGACGAGGCTCGCCGCATTGCCGGCACCTCCGGCCGAACGTTGCTTTTGACGATTCCTGAAAGCGTGGGATATGAGCAGAACCCGTTGAGCTTGTACTACTGCTATGATGATCAGATTTTGAAGCAGTGCATTGCTGAGGTCACCAATACGCCATGGGGAGAAAGAGTGTTATTTGTTTTCAATCCAGATTCTGATTTAGTGGCGAAACCACTACATGTCAGTCCCTTTATGGACATGTTTGGGAATTGGAGTATCAGAGCAAATGCTCCTGACAATACTTTGTTCGTTTCAATTTCAGTTCAACACCCTGACCTTGGAAACTATTTTACAGCTACCCTAAAAGCCAAAAGGGTACCCTCATCATTGGTGTCTGATCATGCACTGTTTTTCTGGTTGATGCCGCATAAGGTTGCAGTGTGGATATATTGGCATGCCATTAAACTTTGGTGGAAGAATGTGGCATTTGTCCAACACCCAAGGTATACCAACCCTGCATATAGGGAGGAAGCTCTGGTTCGTAACCAGAAACTTCAATGCTGTCCGGCTATTGGATTGGACAAAGATAAACATCTGCGACTTGAAGGAAGTAGTCAAGGATGTAGGGTCAACAAAGAAAGTGAGGCTCGTTATATTAAATGGAGAGATGCTAAGTGGCCTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

308

Amino Acids

35.6

Weight (kDa)

9.34

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1365 PF07103 46 - 80 5.8e-08 Protein of unknown function (DUF1365)
DUF1365 PF07103 96 - 247 1.2e-38 Protein of unknown function (DUF1365)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30130 AT1G30130 AT1G30130
fragaria_vesca FvH4_3g05380 FvH4_3g05380
malus_domestica MD05G1282500.v1.1
prunus_persica Prupe.4G082300_v2.0.a1
pyrus_communis pycom10g21690
rosa_chinensis RchiOBHm_Chr5g0014371
rosa_laevigata RLG00000032102
rosa_multiflora Rmu_sc0000659.1_g000041
rosa_roxburghii Rroxscaffold_1G00062220
rosa_rugosa Rorug05G0017600
rosa_samantha Rh5AG112300 Rh5BG109000 Rh5CG120800 Rh5DG108000
rosa_wichuraiana Rw5G009740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 613
AccB1I GGYRCC 3 cut(s) 146, 284, 613
AccI GTMKAC 1 cut(s) 743
AccII CGCG 3 cut(s) 111, 237, 239
AclI AACGTT 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 292
AfaI GTAC 2 cut(s) 356, 615
AfiI CCNNNNNNNGG 2 cut(s) 575, 809
AflIII ACRYGT 2 cut(s) 475, 495
AgsI TTSAA 6 cut(s) 382, 442, 552, 563, 794, 842
AluBI AGCT 3 cut(s) 351, 593, 770
AluI AGCT 3 cut(s) 351, 593, 770
Alw26I GTCTC 1 cut(s) 136
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 2 cut(s) 292, 914
Asp718I GGTACC 1 cut(s) 613
AspLEI GCGC 3 cut(s) 113, 239, 241
AsuHPI GGTGA 1 cut(s) 394
BanI GGYRCC 3 cut(s) 146, 284, 613
BauI CACGAG 1 cut(s) 158
BbvCI CCTCAGC 1 cut(s) 396
BclI TGATCA 2 cut(s) 370, 634
BcoDI GTCTC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 266
BisI GCNGC 5 cut(s) 94, 114, 169, 274, 662
BlsI GCNGC 5 cut(s) 95, 115, 170, 275, 663
BmiI GGNNCC 3 cut(s) 148, 286, 615
BmsI GCATC 2 cut(s) 648, 895
Bpu10I CCTNAGC 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 828
BsaJI CCNNGG 5 cut(s) 142, 413, 574, 737, 917
BsaXI ACNNNNNCTCC 6 cut(s) 48, 78, 239, 269, 411, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 809
Bse118I RCCGGY 1 cut(s) 281
Bse3DI GCAATG 2 cut(s) 276, 390
Bse8I GATNNNNATC 1 cut(s) 828
BseDI CCNNGG 5 cut(s) 142, 413, 574, 737, 917
BseGI GGATG 1 cut(s) 863
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 2 cut(s) 575, 809
BseMI GCAATG 2 cut(s) 276, 390
BseMII CTCAG 1 cut(s) 387
BsePI GCGCGC 1 cut(s) 237
BseRI GAGGAG 4 cut(s) 56, 59, 77, 115
BseX3I CGGCCG 1 cut(s) 292
Bsh1236I CGCG 3 cut(s) 111, 237, 239
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 2 cut(s) 294, 916
BshNI GGYRCC 3 cut(s) 146, 284, 613
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 3 cut(s) 282, 291, 803
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 2 cut(s) 575, 809
BsmAI GTCTC 1 cut(s) 136
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 2 cut(s) 294, 916
Bsp143I GATC 2 cut(s) 370, 634
Bsp19I CCATGG 1 cut(s) 413
BspANI GGCC 2 cut(s) 294, 916
BspCNI CTCAG 1 cut(s) 388
BspFNI CGCG 3 cut(s) 111, 237, 239
BspLI GGNNCC 3 cut(s) 148, 286, 615
BspT107I GGYRCC 3 cut(s) 146, 284, 613
BsrDI GCAATG 2 cut(s) 276, 390
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 5 cut(s) 142, 413, 574, 737, 917
BssHII GCGCGC 1 cut(s) 237
BssMI GATC 2 cut(s) 370, 634
BssNAI GTATAC 1 cut(s) 744
BssSI CACGAG 1 cut(s) 158
BssT1I CCWWGG 5 cut(s) 142, 413, 574, 737, 917
Bst1107I GTATAC 1 cut(s) 744
Bst2BI CACGAG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 151, 645
BstC8I GCNNGC 4 cut(s) 239, 271, 283, 693
BstDEI CTNAG 2 cut(s) 396, 909
BstDSI CCRYGG 1 cut(s) 413
BstEII GGTNACC 1 cut(s) 400
BstF5I GGATG 1 cut(s) 863
BstFNI CGCG 3 cut(s) 111, 237, 239
BstHHI GCGC 3 cut(s) 113, 239, 241
BstKTI GATC 2 cut(s) 373, 637
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 2 cut(s) 370, 634
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 4 cut(s) 177, 266, 282, 291
BstNSI RCATGY 3 cut(s) 479, 499, 695
BstPI GGTNACC 1 cut(s) 400
BstUI CGCG 3 cut(s) 111, 237, 239
BstZ17I GTATAC 1 cut(s) 744
BstZI CGGCCG 1 cut(s) 292
BsuRI GGCC 2 cut(s) 294, 916
BtgI CCRYGG 1 cut(s) 413
BtsCI GGATG 1 cut(s) 863
BtsI GCAGTG 2 cut(s) 392, 681
BtsIMutI CAGTG 3 cut(s) 392, 641, 681
Cac8I GCNNGC 4 cut(s) 239, 271, 283, 693
CaiI CAGNNNCTG 1 cut(s) 452
CfoI GCGC 3 cut(s) 113, 239, 241
Cfr10I RCCGGY 1 cut(s) 281
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 355, 614
CviAII CATG 5 cut(s) 414, 476, 496, 638, 692
CviJI RGCY 9 cut(s) 269, 294, 351, 593, 605, 770, 806, 884, 916
CviKI_1 RGCY 9 cut(s) 269, 294, 351, 593, 605, 770, 806, 884, 916
CviQI GTAC 2 cut(s) 355, 614
DdeI CTNAG 2 cut(s) 396, 909
DpnI GATC 2 cut(s) 372, 636
DpnII GATC 2 cut(s) 370, 634
EaeI YGGCCR 1 cut(s) 292
EagI CGGCCG 1 cut(s) 292
EciI GGCGGA 3 cut(s) 80, 167, 247
EclXI CGGCCG 1 cut(s) 292
Eco130I CCWWGG 5 cut(s) 142, 413, 574, 737, 917
Eco52I CGGCCG 1 cut(s) 292
Eco91I GGTNACC 1 cut(s) 400
EcoO65I GGTNACC 1 cut(s) 400
EcoT14I CCWWGG 5 cut(s) 142, 413, 574, 737, 917
ErhI CCWWGG 5 cut(s) 142, 413, 574, 737, 917
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 5 cut(s) 417, 479, 499, 641, 695
FaqI GGGAC 1 cut(s) 468
FatI CATG 5 cut(s) 413, 475, 495, 637, 691
FauI CCCGC 1 cut(s) 242
FbaI TGATCA 2 cut(s) 370, 634
FblI GTMKAC 1 cut(s) 743
Fnu4HI GCNGC 5 cut(s) 94, 114, 169, 274, 662
FokI GGATG 1 cut(s) 870
Fsp4HI GCNGC 5 cut(s) 94, 114, 169, 274, 662
GlaI GCGC 3 cut(s) 112, 238, 240
GluI GCNGC 5 cut(s) 94, 114, 169, 274, 662
HaeIII GGCC 2 cut(s) 294, 916
HapII CCGG 3 cut(s) 282, 291, 803
HgaI GACGC 1 cut(s) 152
HhaI GCGC 3 cut(s) 113, 239, 241
Hin1II CATG 5 cut(s) 417, 479, 499, 641, 695
Hin6I GCGC 3 cut(s) 111, 237, 239
HinP1I GCGC 3 cut(s) 111, 237, 239
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HinfI GANTC 3 cut(s) 227, 313, 449
HpaII CCGG 3 cut(s) 282, 291, 803
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 744, 868
Hpy188I TCNGA 4 cut(s) 375, 454, 518, 634
Hpy188III TCNNGA 4 cut(s) 158, 317, 446, 530
Hpy8I GTNNAC 2 cut(s) 744, 868
Hpy99I CGWCG 3 cut(s) 168, 227, 266
HpyAV CCTTC 3 cut(s) 49, 196, 836
HpyCH4III ACNGT 2 cut(s) 151, 645
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 4 cut(s) 390, 641, 674, 755
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 266, 282, 291
HpyF3I CTNAG 2 cut(s) 396, 909
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 5 cut(s) 417, 479, 499, 641, 695
HspAI GCGC 3 cut(s) 111, 237, 239
KpnI GGTACC 1 cut(s) 617
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Ksp22I TGATCA 2 cut(s) 370, 634
Kzo9I GATC 2 cut(s) 370, 634
LmnI GCTCC 2 cut(s) 246, 532
LweI GCATC 2 cut(s) 648, 895
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 2 cut(s) 400, 779
MalI GATC 2 cut(s) 372, 636
MboI GATC 2 cut(s) 370, 634
MboII GAAGA 1 cut(s) 724
MluCI AATT 2 cut(s) 505, 552
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 754
MroNI GCCGGC 1 cut(s) 281
MseI TTAA 2 cut(s) 699, 894
MspI CCGG 3 cut(s) 282, 291, 803
MvnI CGCG 3 cut(s) 111, 237, 239
MwoI GCNNNNNNNGC 4 cut(s) 177, 266, 282, 291
NaeI GCCGGC 1 cut(s) 283
NcoI CCATGG 1 cut(s) 413
NdeII GATC 2 cut(s) 370, 634
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 5 cut(s) 417, 479, 499, 641, 695
NlaIV GGNNCC 3 cut(s) 148, 286, 615
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 3 cut(s) 479, 499, 695
PaeI GCATGC 1 cut(s) 695
PauI GCGCGC 1 cut(s) 237
PciI ACATGT 2 cut(s) 475, 495
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 222
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 313, 449
PkrI GCNGC 5 cut(s) 95, 115, 170, 275, 663
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PscI ACATGT 2 cut(s) 475, 495
Psp1406I AACGTT 1 cut(s) 299
PspEI GGTNACC 1 cut(s) 400
PspN4I GGNNCC 3 cut(s) 148, 286, 615
PstNI CAGNNNCTG 1 cut(s) 452
PteI GCGCGC 1 cut(s) 237
RsaI GTAC 2 cut(s) 356, 615
RsaNI GTAC 2 cut(s) 355, 614
SaqAI TTAA 2 cut(s) 699, 894
SatI GCNGC 5 cut(s) 94, 114, 169, 274, 662
Sau3AI GATC 2 cut(s) 370, 634
SchI GAGTC 1 cut(s) 221
SfaNI GCATC 2 cut(s) 648, 895
SphI GCATGC 1 cut(s) 695
Sse9I AATT 2 cut(s) 505, 552
StyI CCWWGG 5 cut(s) 142, 413, 574, 737, 917
TaaI ACNGT 2 cut(s) 151, 645
TaiI ACGT 1 cut(s) 302
TaqI TCGA 2 cut(s) 216, 222
TasI AATT 2 cut(s) 505, 552
TatI WGTACW 1 cut(s) 354
TauI GCSGC 5 cut(s) 96, 116, 171, 276, 664
TfiI GAWTC 2 cut(s) 313, 449
Tru1I TTAA 2 cut(s) 699, 894
Tru9I TTAA 2 cut(s) 699, 894
TscAI CASTG 3 cut(s) 392, 648, 681
TseFI GTSAC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 400
TspGWI ACGGA 2 cut(s) 118, 187
TspRI CASTG 3 cut(s) 392, 648, 681
XceI RCATGY 3 cut(s) 479, 499, 695
XmiI GTMKAC 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.