Rh5BG109000

Protein of unknown function (DUF1365)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
10193750 .. 10196260
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG109000.1

Sequence Viewer

Length: 921 bp
ATGGAGCTTCTCTATCTGCTCTGCTCAATCCTCTCCACCTTCCTCACTTCCCTCACTCTCTCTCTCCTCCTCCCACTCCGCACGCTCCTCCGCCGCCTCTCCCCCTCACGCGCCGCCTCTCCCTCCTCCTCCGTCTCCCTCTACCAAGGCACCGTCTTTCACGAGCGTCGCCGCCCCGTCCACCACTCCTTCCGCTACTCCGTCCGCTACGCTCTCATCGACCTCGACGACTGTCCCCCCAACCACCTCTCCGCCGACGAGGCTCGCCGCATTGCCGGCACCACCGGCCGAACGTTGCTTTTGACGATTCCTGAAAGCGTGGGATATGAGCAGAACCCCTTGAGCTTGTACTACTGCTATGATGATCAGATTTTGAAGCAGTGCATTGCTGAGGTCACCAATACGCCATGGGGAGAAAGAGTGTTATTTGTTTTCAATCCAGATTCTGATTTAGTGGCTAAACCACTACATGTCAGTCCTTTTATGGACATGTTTGGGAATTGGAGTATCAGAGCAAATGCTCCTGACAATACTCTGTTCGTTTCAATTTCAGTTCAACACCCTGACCTCGGAAACTATTTTACAGCTACCCTAACAGCCAAAAGGGTACCCTCATCATTGGTGTCTGATCATGCACTTTTTTTCTGGTTGATGCCACATAAGGTTGCAGTGTGGATATATTGGCATGCCTTTAAACTATGGTGGAAGAATGTGGCATTTGTCCAACACCCAAGGTATACCAACCCTGCATATAGGGAGGAAGCTCTGGTTCGTAACCAGAAACTTCAATGCTGTCCGGCTATTGGATTGGACAAAGATAAACATCTGCGACTTGAAGGAAGTAGTCAAGGATGTAGGGTCAACAAAGAAAGTGAGGCTCGTTATATTAAATGGAGAGATGCTAAGTGGCCTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

306

Amino Acids

35.33

Weight (kDa)

9.01

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1365 PF07103 47 - 79 1.7e-07 Protein of unknown function (DUF1365)
DUF1365 PF07103 94 - 245 8e-39 Protein of unknown function (DUF1365)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30130 AT1G30130 AT1G30130
fragaria_vesca FvH4_3g05380 FvH4_3g05380
malus_domestica MD05G1282500.v1.1
prunus_persica Prupe.4G082300_v2.0.a1
pyrus_communis pycom10g21690
rosa_chinensis RchiOBHm_Chr5g0014371
rosa_laevigata RLG00000032102
rosa_multiflora Rmu_sc0000659.1_g000041
rosa_roxburghii Rroxscaffold_1G00062220
rosa_rugosa Rorug05G0017600
rosa_samantha Rh5AG112300 Rh5BG109000 Rh5CG120800 Rh5DG108000
rosa_wichuraiana Rw5G009740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 607
AccB1I GGYRCC 3 cut(s) 149, 278, 607
AccI GTMKAC 1 cut(s) 737
AccII CGCG 1 cut(s) 111
AciI CCGC 9 cut(s) 79, 91, 94, 114, 172, 193, 205, 252, 268
AclI AACGTT 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 286
AfaI GTAC 2 cut(s) 350, 609
AfiI CCNNNNNNNGG 2 cut(s) 569, 803
AflIII ACRYGT 2 cut(s) 469, 489
AgsI TTSAA 6 cut(s) 376, 436, 546, 557, 788, 836
AluBI AGCT 4 cut(s) 7, 345, 587, 764
AluI AGCT 4 cut(s) 7, 345, 587, 764
Alw26I GTCTC 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 2 cut(s) 286, 908
Asp718I GGTACC 1 cut(s) 607
AspLEI GCGC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 388
BanI GGYRCC 3 cut(s) 149, 278, 607
BauI CACGAG 1 cut(s) 161
BbvCI CCTCAGC 1 cut(s) 390
BclI TGATCA 2 cut(s) 364, 628
BcoDI GTCTC 1 cut(s) 139
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 4 cut(s) 94, 114, 172, 268
BlsI GCNGC 4 cut(s) 95, 115, 173, 269
BmiI GGNNCC 3 cut(s) 151, 280, 609
BmsI GCATC 2 cut(s) 642, 889
BoxI GACNNNNGTC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 361
BsaBI GATNNNNATC 1 cut(s) 822
BsaJI CCNNGG 5 cut(s) 145, 407, 568, 731, 911
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 405, 435
Bsc4I CCNNNNNNNGG 2 cut(s) 569, 803
Bse118I RCCGGY 2 cut(s) 275, 284
Bse3DI GCAATG 2 cut(s) 270, 384
Bse8I GATNNNNATC 1 cut(s) 822
BseDI CCNNGG 5 cut(s) 145, 407, 568, 731, 911
BseGI GGATG 1 cut(s) 857
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 2 cut(s) 569, 803
BseMI GCAATG 2 cut(s) 270, 384
BseMII CTCAG 1 cut(s) 381
BseRI GAGGAG 5 cut(s) 56, 59, 77, 115, 118
BseX3I CGGCCG 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 2 cut(s) 288, 910
BshNI GGYRCC 3 cut(s) 149, 278, 607
BsiEI CGRYCG 1 cut(s) 289
BsiSI CCGG 3 cut(s) 276, 285, 797
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 569, 803
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 2 cut(s) 288, 910
Bsp143I GATC 2 cut(s) 364, 628
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 9 cut(s) 79, 91, 94, 114, 172, 193, 205, 252, 268
BspANI GGCC 2 cut(s) 288, 910
BspCNI CTCAG 1 cut(s) 382
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 3 cut(s) 151, 280, 609
BspT107I GGYRCC 3 cut(s) 149, 278, 607
BsrDI GCAATG 2 cut(s) 270, 384
BsrFI RCCGGY 2 cut(s) 275, 284
BssAI RCCGGY 2 cut(s) 275, 284
BssECI CCNNGG 5 cut(s) 145, 407, 568, 731, 911
BssMI GATC 2 cut(s) 364, 628
BssNAI GTATAC 1 cut(s) 738
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 4 cut(s) 145, 407, 731, 911
Bst1107I GTATAC 1 cut(s) 738
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 154, 233
BstC8I GCNNGC 4 cut(s) 83, 265, 277, 687
BstDEI CTNAG 2 cut(s) 390, 903
BstDSI CCRYGG 1 cut(s) 407
BstEII GGTNACC 1 cut(s) 394
BstF5I GGATG 1 cut(s) 857
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 367, 631
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 364, 628
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 3 cut(s) 260, 276, 285
BstNSI RCATGY 3 cut(s) 473, 493, 689
BstPAI GACNNNNGTC 1 cut(s) 231
BstPI GGTNACC 1 cut(s) 394
BstUI CGCG 1 cut(s) 111
BstZ17I GTATAC 1 cut(s) 738
BstZI CGGCCG 1 cut(s) 286
BsuRI GGCC 2 cut(s) 288, 910
BtgI CCRYGG 1 cut(s) 407
BtsCI GGATG 1 cut(s) 857
BtsI GCAGTG 2 cut(s) 386, 675
BtsIMutI CAGTG 2 cut(s) 386, 675
Cac8I GCNNGC 4 cut(s) 83, 265, 277, 687
CaiI CAGNNNCTG 1 cut(s) 446
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 2 cut(s) 275, 284
CseI GACGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 349, 608
CviAII CATG 5 cut(s) 408, 470, 490, 632, 686
CviQI GTAC 2 cut(s) 349, 608
DdeI CTNAG 2 cut(s) 390, 903
DpnI GATC 2 cut(s) 366, 630
DpnII GATC 2 cut(s) 364, 628
DraI TTTAAA 1 cut(s) 694
EaeI YGGCCR 1 cut(s) 286
EagI CGGCCG 1 cut(s) 286
EciI GGCGGA 2 cut(s) 80, 241
EclXI CGGCCG 1 cut(s) 286
Eco130I CCWWGG 4 cut(s) 145, 407, 731, 911
Eco52I CGGCCG 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 394
EcoT14I CCWWGG 4 cut(s) 145, 407, 731, 911
ErhI CCWWGG 4 cut(s) 145, 407, 731, 911
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 5 cut(s) 411, 473, 493, 635, 689
FaqI GGGAC 1 cut(s) 219
FatI CATG 5 cut(s) 407, 469, 489, 631, 685
FbaI TGATCA 2 cut(s) 364, 628
FblI GTMKAC 1 cut(s) 737
Fnu4HI GCNGC 4 cut(s) 94, 114, 172, 268
FokI GGATG 1 cut(s) 864
Fsp4HI GCNGC 4 cut(s) 94, 114, 172, 268
GlaI GCGC 1 cut(s) 112
GluI GCNGC 4 cut(s) 94, 114, 172, 268
HaeIII GGCC 2 cut(s) 288, 910
HapII CCGG 3 cut(s) 276, 285, 797
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 113
Hin1II CATG 5 cut(s) 411, 473, 493, 635, 689
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HinfI GANTC 2 cut(s) 307, 443
HpaII CCGG 3 cut(s) 276, 285, 797
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 3 cut(s) 181, 738, 862
Hpy188I TCNGA 5 cut(s) 369, 448, 512, 572, 628
Hpy188III TCNNGA 4 cut(s) 161, 311, 440, 524
Hpy8I GTNNAC 3 cut(s) 181, 738, 862
Hpy99I CGWCG 3 cut(s) 171, 230, 260
HpyAV CCTTC 3 cut(s) 49, 199, 830
HpyCH4III ACNGT 2 cut(s) 154, 233
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 4 cut(s) 384, 635, 668, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 276, 285
HpyF3I CTNAG 2 cut(s) 390, 903
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 5 cut(s) 411, 473, 493, 635, 689
HspAI GCGC 1 cut(s) 111
KpnI GGTACC 1 cut(s) 611
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Ksp22I TGATCA 2 cut(s) 364, 628
Kzo9I GATC 2 cut(s) 364, 628
LmnI GCTCC 3 cut(s) 4, 90, 526
LweI GCATC 2 cut(s) 642, 889
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 394, 773
MalI GATC 2 cut(s) 366, 630
MboI GATC 2 cut(s) 364, 628
MboII GAAGA 1 cut(s) 718
MluCI AATT 2 cut(s) 499, 546
MmeI TCCRAC 1 cut(s) 748
MroNI GCCGGC 1 cut(s) 275
MseI TTAA 2 cut(s) 693, 888
MspI CCGG 3 cut(s) 276, 285, 797
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 260, 276, 285
NaeI GCCGGC 1 cut(s) 277
NcoI CCATGG 1 cut(s) 407
NdeII GATC 2 cut(s) 364, 628
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 5 cut(s) 411, 473, 493, 635, 689
NlaIV GGNNCC 3 cut(s) 151, 280, 609
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 3 cut(s) 473, 493, 689
PaeI GCATGC 1 cut(s) 689
PciI ACATGT 2 cut(s) 469, 489
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 225
PdiI GCCGGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 307, 443
PkrI GCNGC 4 cut(s) 95, 115, 173, 269
PscI ACATGT 2 cut(s) 469, 489
PshAI GACNNNNGTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 293
PspEI GGTNACC 1 cut(s) 394
PspN4I GGNNCC 3 cut(s) 151, 280, 609
PstNI CAGNNNCTG 1 cut(s) 446
RsaI GTAC 2 cut(s) 350, 609
RsaNI GTAC 2 cut(s) 349, 608
SaqAI TTAA 2 cut(s) 693, 888
SatI GCNGC 4 cut(s) 94, 114, 172, 268
Sau3AI GATC 2 cut(s) 364, 628
SfaNI GCATC 2 cut(s) 642, 889
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SphI GCATGC 1 cut(s) 689
Sse9I AATT 2 cut(s) 499, 546
SsiI CCGC 9 cut(s) 79, 91, 94, 114, 172, 193, 205, 252, 268
StyI CCWWGG 4 cut(s) 145, 407, 731, 911
TaaI ACNGT 2 cut(s) 154, 233
TaiI ACGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 219, 225
TasI AATT 2 cut(s) 499, 546
TatI WGTACW 1 cut(s) 348
TauI GCSGC 4 cut(s) 96, 116, 174, 270
TfiI GAWTC 2 cut(s) 307, 443
Tru1I TTAA 2 cut(s) 693, 888
Tru9I TTAA 2 cut(s) 693, 888
TscAI CASTG 2 cut(s) 386, 675
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspGWI ACGGA 2 cut(s) 121, 190
TspRI CASTG 2 cut(s) 386, 675
XceI RCATGY 3 cut(s) 473, 493, 689
XmiI GTMKAC 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.