Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013017

Physical Location & Seq

Genomic Coordinates Reverse (-)

41591839 .. 41595672

Gene Structure 3834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1282500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGGTATTCTATCTGTTATGCTCAATCCTCTCCACCTTTCTCACTTCCCTCACTCTCTCCCTCCTCCTCCCGTTCCACACCCTCCTCCGCCGCTTCTCTTCACGCGCCGCCTCTTCCTCTTCCACCTCCCTCTACGAAGGCACCGTCTGGCACGAGCGCCGCCGTCCTGTTCACCACTCTTTTCGCTATGCCGTCCGCTACGCGCTCATTGACCTCGATCACACGCCGCAACCCCTCCCCAACCACCTCTCCGCCGACGAAGCTCGCCGAATTGCCGGCACCGGTGGCCGAACCTTGCTTTTGACAATTCCGCAAAGCGTGGGATATGAGCAGAACCCACTGAGCTTGTACTACTGTTATGATGTTGGTGAGCAGCTTTTGAAAAAGTGCATTGCTGAGGTAACCAACACACCATGGGGAGAAAGAGTGACATTTGTGTTCAACCCAAATTCTGATTTAGTGGCAAAACCATTACATGTCAGCCCTTTCATGGATATGTTGGGGAATTGGAGTATCAGAGCAAATGCTCCCGAAGATGATCTATTTGTTTCAATTTCGGTTCAACACCCAAACCTTGGCAATTATTTCACAGCTACCCTAAAAGCCAAAAGGGTATCCTCAACTTCGGCATCTGATCACGCACTGTTTTTCTGGTTGATGCCGCATAAGGTTGCAGTGTGGATTTATTGGCATGCCTTCAAACTGTGGTGGAAAAATGTGTCATTTGTCCAACATCCAAGGTACTCCAACCCTGCATATAGGGAGGAAGCTTTGGTACGTGATAGAAAACTTCAATGCTGTCCGGCTGTTGGATTTGGTGAAGATAAATGGCATCTGCAACTTGAAGGAAATGGTCAAGGATGTATAGCTAACAGCGGGGATCGTTTTTGTACATGGAGAGATGCTAAGTGGCCTTGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1365

Protein Analysis

309

Amino Acids

35.35

Weight (kDa)

8.74

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1365	PF07103	45 - 79	1.7e-07	Protein of unknown function (DUF1365)
DUF1365	PF07103	94 - 248	3.5e-39	Protein of unknown function (DUF1365)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30130 AT1G30130 AT1G30130
fragaria_vesca	FvH4_3g05380 FvH4_3g05380
malus_domestica	MD05G1282500.v1.1
prunus_persica	Prupe.4G082300_v2.0.a1
pyrus_communis	pycom10g21690
rosa_chinensis	RchiOBHm_Chr5g0014371
rosa_laevigata	RLG00000032102
rosa_multiflora	Rmu_sc0000659.1_g000041
rosa_roxburghii	Rroxscaffold_1G00062220
rosa_rugosa	Rorug05G0017600
rosa_samantha	Rh5AG112300 Rh5BG109000 Rh5CG120800 Rh5DG108000
rosa_wichuraiana	Rw5G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	143, 281
AccB7I	CCANNNNNTGG	1 cut(s)	578
AccII	CGCG	2 cut(s)	108, 206
AclWI	GGATC	1 cut(s)	891
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	451
AfaI	GTAC	4 cut(s)	353, 746, 780, 895
AfiI	CCNNNNNNNGG	3 cut(s)	493, 578, 812
AflIII	ACRYGT	1 cut(s)	478
AgeI	ACCGGT	1 cut(s)	284
AgsI	TTSAA	7 cut(s)	385, 445, 555, 566, 703, 797, 848
AluBI	AGCT	6 cut(s)	266, 348, 379, 596, 773, 872
AluI	AGCT	6 cut(s)	266, 348, 379, 596, 773, 872
AlwI	GGATC	1 cut(s)	891
AoxI	GGCC	2 cut(s)	289, 914
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AsiGI	ACCGGT	1 cut(s)	284
AspLEI	GCGC	3 cut(s)	110, 162, 208
AsuHPI	GGTGA	3 cut(s)	167, 383, 833
BanI	GGYRCC	2 cut(s)	143, 281
BarI	GAAGNNNNNNTAC	2 cut(s)	762, 794
BauI	CACGAG	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	388
BceAI	ACGGC	2 cut(s)	150, 179
BciVI	GTATCC	1 cut(s)	628
BclI	TGATCA	1 cut(s)	637
BfoI	RGCGCY	1 cut(s)	163
BfuI	GTATCC	1 cut(s)	628
BisI	GCNGC	6 cut(s)	94, 111, 163, 230, 377, 665
BlsI	GCNGC	6 cut(s)	95, 112, 164, 231, 378, 666
BmiI	GGNNCC	2 cut(s)	145, 283
BmsI	GCATC	4 cut(s)	641, 651, 844, 895
Bpu10I	CCTNAGC	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	782
BsaJI	CCNNGG	4 cut(s)	416, 577, 740, 917
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	4 cut(s)	236, 266, 414, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	493, 578, 812
Bse118I	RCCGGY	2 cut(s)	278, 284
Bse3DI	GCAATG	1 cut(s)	393
BseDI	CCNNGG	4 cut(s)	416, 577, 740, 917
BseGI	GGATG	2 cut(s)	736, 869
BseLI	CCNNNNNNNGG	3 cut(s)	493, 578, 812
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	335, 390
BseRI	GAGGAG	3 cut(s)	56, 59, 77
BseXI	GCAGC	1 cut(s)	388
Bsh1236I	CGCG	2 cut(s)	108, 206
BshFI	GGCC	2 cut(s)	291, 916
BshNI	GGYRCC	2 cut(s)	143, 281
BshTI	ACCGGT	1 cut(s)	284
BsiSI	CCGG	3 cut(s)	279, 285, 806
BslI	CCNNNNNNNGG	3 cut(s)	493, 578, 812
BsnI	GGCC	2 cut(s)	291, 916
Bsp1407I	TGTACA	1 cut(s)	893
Bsp143I	GATC	4 cut(s)	220, 541, 637, 883
Bsp19I	CCATGG	1 cut(s)	416
BspANI	GGCC	2 cut(s)	291, 916
BspCNI	CTCAG	2 cut(s)	336, 391
BspFNI	CGCG	2 cut(s)	108, 206
BspLI	GGNNCC	2 cut(s)	145, 283
BspPI	GGATC	1 cut(s)	891
BspT107I	GGYRCC	2 cut(s)	143, 281
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	2 cut(s)	278, 284
BsrGI	TGTACA	1 cut(s)	893
BssAI	RCCGGY	2 cut(s)	278, 284
BssECI	CCNNGG	4 cut(s)	416, 577, 740, 917
BssMI	GATC	4 cut(s)	220, 541, 637, 883
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	4 cut(s)	416, 577, 740, 917
Bst2BI	CACGAG	1 cut(s)	155
Bst4CI	ACNGT	4 cut(s)	148, 359, 648, 708
Bst6I	CTCTTC	3 cut(s)	106, 121, 127
BstAUI	TGTACA	1 cut(s)	893
BstBAI	YACGTR	1 cut(s)	782
BstC8I	GCNNGC	3 cut(s)	268, 280, 696
BstDEI	CTNAG	3 cut(s)	344, 399, 909
BstDSI	CCRYGG	1 cut(s)	416
BstEII	GGTNACC	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	736, 869
BstFNI	CGCG	2 cut(s)	108, 206
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	3 cut(s)	110, 162, 208
BstKTI	GATC	4 cut(s)	223, 544, 640, 886
BstMBI	GATC	4 cut(s)	220, 541, 637, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 288
BstNSI	RCATGY	2 cut(s)	482, 698
BstPI	GGTNACC	1 cut(s)	403
BstUI	CGCG	2 cut(s)	108, 206
BstV1I	GCAGC	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	628
BsuRI	GGCC	2 cut(s)	291, 916
BtgI	CCRYGG	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	736, 869
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	3 cut(s)	341, 644, 684
Cac8I	GCNNGC	3 cut(s)	268, 280, 696
CfoI	GCGC	3 cut(s)	110, 162, 208
Cfr10I	RCCGGY	2 cut(s)	278, 284
Csp6I	GTAC	4 cut(s)	352, 745, 779, 894
CspAI	ACCGGT	1 cut(s)	284
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	5 cut(s)	417, 479, 493, 695, 897
CviQI	GTAC	4 cut(s)	352, 745, 779, 894
DdeI	CTNAG	3 cut(s)	344, 399, 909
DpnI	GATC	4 cut(s)	222, 543, 639, 885
DpnII	GATC	4 cut(s)	220, 541, 637, 883
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	3 cut(s)	106, 121, 127
EarI	CTCTTC	3 cut(s)	106, 121, 127
EciI	GGCGGA	2 cut(s)	80, 244
Eco130I	CCWWGG	4 cut(s)	416, 577, 740, 917
Eco91I	GGTNACC	1 cut(s)	403
EcoO65I	GGTNACC	1 cut(s)	403
EcoT14I	CCWWGG	4 cut(s)	416, 577, 740, 917
ErhI	CCWWGG	4 cut(s)	416, 577, 740, 917
FaeI	CATG	5 cut(s)	420, 482, 496, 698, 900
FatI	CATG	5 cut(s)	416, 478, 492, 694, 896
FauI	CCCGC	1 cut(s)	872
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	6 cut(s)	94, 111, 163, 230, 377, 665
FokI	GGATG	2 cut(s)	723, 876
Fsp4HI	GCNGC	6 cut(s)	94, 111, 163, 230, 377, 665
GlaI	GCGC	3 cut(s)	109, 161, 207
GluI	GCNGC	6 cut(s)	94, 111, 163, 230, 377, 665
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	291, 916
HapII	CCGG	3 cut(s)	279, 285, 806
HhaI	GCGC	3 cut(s)	110, 162, 208
Hin1II	CATG	5 cut(s)	420, 482, 496, 698, 900
Hin6I	GCGC	3 cut(s)	108, 160, 206
HinP1I	GCGC	3 cut(s)	108, 160, 206
HindIII	AAGCTT	1 cut(s)	771
HpaII	CCGG	3 cut(s)	279, 285, 806
HphI	GGTGA	3 cut(s)	167, 383, 833
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	457, 521, 637
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	134, 709, 842
HpyCH4III	ACNGT	4 cut(s)	148, 359, 648, 708
HpyCH4IV	ACGT	1 cut(s)	781
HpyCH4V	TGCA	4 cut(s)	393, 677, 758, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 288
HpyF3I	CTNAG	3 cut(s)	344, 399, 909
HpySE526I	ACGT	1 cut(s)	781
Hsp92II	CATG	5 cut(s)	420, 482, 496, 698, 900
HspAI	GCGC	3 cut(s)	108, 160, 206
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	4 cut(s)	220, 541, 637, 883
LmnI	GCTCC	1 cut(s)	535
LpnPI	CCDG	7 cut(s)	136, 183, 292, 298, 640, 768, 819
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	4 cut(s)	641, 651, 844, 895
MaeII	ACGT	1 cut(s)	781
MaeIII	GTNAC	2 cut(s)	403, 430
MalI	GATC	4 cut(s)	222, 543, 639, 885
MboI	GATC	4 cut(s)	220, 541, 637, 883
MboII	GAAGA	5 cut(s)	93, 108, 114, 548, 836
MluCI	AATT	6 cut(s)	273, 309, 451, 508, 555, 583
MmeI	TCCRAC	3 cut(s)	757, 774, 793
MroNI	GCCGGC	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	879
MspI	CCGG	3 cut(s)	279, 285, 806
MvnI	CGCG	2 cut(s)	108, 206
MwoI	GCNNNNNNNGC	2 cut(s)	263, 288
NaeI	GCCGGC	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	4 cut(s)	220, 541, 637, 883
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	5 cut(s)	420, 482, 496, 698, 900
NlaIV	GGNNCC	2 cut(s)	145, 283
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	2 cut(s)	482, 698
PaeI	GCATGC	1 cut(s)	698
PciI	ACATGT	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	280
PflMI	CCANNNNNTGG	1 cut(s)	578
PinAI	ACCGGT	1 cut(s)	284
PkrI	GCNGC	6 cut(s)	95, 112, 164, 231, 378, 666
Ppu21I	YACGTR	1 cut(s)	782
PscI	ACATGT	1 cut(s)	478
PspEI	GGTNACC	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	145, 283
RsaI	GTAC	4 cut(s)	353, 746, 780, 895
RsaNI	GTAC	4 cut(s)	352, 745, 779, 894
RseI	CAYNNNNRTG	1 cut(s)	497
SatI	GCNGC	6 cut(s)	94, 111, 163, 230, 377, 665
Sau3AI	GATC	4 cut(s)	220, 541, 637, 883
SfaNI	GCATC	4 cut(s)	641, 651, 844, 895
SgrAI	CRCCGGYG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	497
SphI	GCATGC	1 cut(s)	698
Sse9I	AATT	6 cut(s)	273, 309, 451, 508, 555, 583
StyI	CCWWGG	4 cut(s)	416, 577, 740, 917
TaaI	ACNGT	4 cut(s)	148, 359, 648, 708
TaiI	ACGT	1 cut(s)	784
TaqI	TCGA	1 cut(s)	219
TasI	AATT	6 cut(s)	273, 309, 451, 508, 555, 583
TatI	WGTACW	2 cut(s)	351, 893
TauI	GCSGC	5 cut(s)	96, 113, 165, 232, 667
TscAI	CASTG	3 cut(s)	348, 651, 684
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	481
TspRI	CASTG	3 cut(s)	348, 651, 684
Van91I	CCANNNNNTGG	1 cut(s)	578
XapI	RAATTY	1 cut(s)	451
XceI	RCATGY	2 cut(s)	482, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.