Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0013017

Physical Location & Seq

Genomic Coordinates Forward (+)

10538870 .. 10541150

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G009740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGCTTCTCTATCTGCTCTGCTCAATCCTCTCCACCTTCCTCACTTCCCTCACTCTCTCTCTCCTCCTCCCACTCCGCACGCTCCTCCGCCGCCTCTCCCCCTCACGCGCCGCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGTCTCCCTCTACCAAGGCACCGTCTTTCACGAGCGTCGCCGCCCCGTCCACCACTCCTTCCGCTACTCCGTCCGCTACGCTCTCATCGACCTCGACGACTCGCCCCGCGCGCTCCCCAACCACCTCTCCGCCGACGAGGCTCGCCGCATTGCCGGCACCACCGGCCGAACGTTGCTTTTGACGATTCCTGAAAGCGTGGGATATGAGCAGAACCCGTTGAGCTTGTACTACTGCTATGATGATCAGATTTTGAAGCACTGCATTGCTGAGGTCACCAATACGCCATGGGGAGAAAGAGTGTTATTTGTTTTCAATCCAGATTCTGATTTAGTGGCTAAACCACTACATGTCAGTCCTTTTATGGACATGTTTGGGAATTGGAGAATCAGAGCAAATGCTCCTGACAATACTCTGTTCGTTTCAATTTCAGTTCAACACCCTGACCTTGGAAACTATTTTACAGCTACCCTAAAAGCCAAAAGGGTACCCTCATCATTGGTGTCTGATCATGCACTGTTTTTCTGGTTGATGCCGCATAAGGTTGCAGTGTGGATATATTGGCATGCCATTAAACTTTGGTGGAAGAATGTGGCATTTGTCCAACACCCAAGGTATACCAACCCTGCATATAGGGAGGAAGCTCTGGTTCGTAACCAGAAACTTCAATGCTGTCCGGCTATTGGATTGGGCAAAGATAAACATCTGCGACTTGAAGGAAGTAGGGTCAACAAAGAAAGTGAGGCTCGTTATATTAAATGGAGAGATGCTAAGTGGCCTTGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1365

Protein Analysis

311

Amino Acids

35.82

Weight (kDa)

9.47

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1365	PF07103	53 - 87	9.1e-08	Protein of unknown function (DUF1365)
DUF1365	PF07103	103 - 254	1.8e-39	Protein of unknown function (DUF1365)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30130 AT1G30130 AT1G30130
fragaria_vesca	FvH4_3g05380 FvH4_3g05380
malus_domestica	MD05G1282500.v1.1
prunus_persica	Prupe.4G082300_v2.0.a1
pyrus_communis	pycom10g21690
rosa_chinensis	RchiOBHm_Chr5g0014371
rosa_laevigata	RLG00000032102
rosa_multiflora	Rmu_sc0000659.1_g000041
rosa_roxburghii	Rroxscaffold_1G00062220
rosa_rugosa	Rorug05G0017600
rosa_samantha	Rh5AG112300 Rh5BG109000 Rh5CG120800 Rh5DG108000
rosa_wichuraiana	Rw5G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	634
AccB1I	GGYRCC	3 cut(s)	167, 305, 634
AccI	GTMKAC	1 cut(s)	764
AccII	CGCG	3 cut(s)	111, 258, 260
AclI	AACGTT	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	313
AfaI	GTAC	2 cut(s)	377, 636
AfiI	CCNNNNNNNGG	2 cut(s)	596, 830
AflIII	ACRYGT	2 cut(s)	496, 516
AgsI	TTSAA	6 cut(s)	403, 463, 573, 584, 815, 863
AluBI	AGCT	4 cut(s)	7, 372, 614, 791
AluI	AGCT	4 cut(s)	7, 372, 614, 791
Alw26I	GTCTC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	313, 923
Asp718I	GGTACC	1 cut(s)	634
AspLEI	GCGC	3 cut(s)	113, 260, 262
AsuHPI	GGTGA	1 cut(s)	415
BanI	GGYRCC	3 cut(s)	167, 305, 634
BauI	CACGAG	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	417
BclI	TGATCA	2 cut(s)	391, 655
BcoDI	GTCTC	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	5 cut(s)	94, 114, 190, 295, 683
BlsI	GCNGC	5 cut(s)	95, 115, 191, 296, 684
BmiI	GGNNCC	3 cut(s)	169, 307, 636
BmsI	GCATC	2 cut(s)	669, 904
Bpu10I	CCTNAGC	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	849
BsaJI	CCNNGG	5 cut(s)	163, 434, 595, 758, 926
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 290, 432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 830
Bse118I	RCCGGY	2 cut(s)	302, 311
Bse3DI	GCAATG	2 cut(s)	297, 411
Bse8I	GATNNNNATC	1 cut(s)	849
BseDI	CCNNGG	5 cut(s)	163, 434, 595, 758, 926
BseJI	GATNNNNATC	1 cut(s)	849
BseLI	CCNNNNNNNGG	2 cut(s)	596, 830
BseMI	GCAATG	2 cut(s)	297, 411
BseMII	CTCAG	1 cut(s)	408
BsePI	GCGCGC	1 cut(s)	258
BseX3I	CGGCCG	1 cut(s)	313
Bsh1236I	CGCG	3 cut(s)	111, 258, 260
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	315, 925
BshNI	GGYRCC	3 cut(s)	167, 305, 634
BsiEI	CGRYCG	1 cut(s)	316
BsiSI	CCGG	3 cut(s)	303, 312, 824
BslI	CCNNNNNNNGG	2 cut(s)	596, 830
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	315, 925
Bsp143I	GATC	2 cut(s)	391, 655
Bsp19I	CCATGG	1 cut(s)	434
BspANI	GGCC	2 cut(s)	315, 925
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	3 cut(s)	111, 258, 260
BspLI	GGNNCC	3 cut(s)	169, 307, 636
BspT107I	GGYRCC	3 cut(s)	167, 305, 634
BsrDI	GCAATG	2 cut(s)	297, 411
BsrFI	RCCGGY	2 cut(s)	302, 311
BssAI	RCCGGY	2 cut(s)	302, 311
BssECI	CCNNGG	5 cut(s)	163, 434, 595, 758, 926
BssHII	GCGCGC	1 cut(s)	258
BssMI	GATC	2 cut(s)	391, 655
BssNAI	GTATAC	1 cut(s)	765
BssSI	CACGAG	1 cut(s)	179
BssT1I	CCWWGG	5 cut(s)	163, 434, 595, 758, 926
Bst1107I	GTATAC	1 cut(s)	765
Bst2BI	CACGAG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	172, 666
BstC8I	GCNNGC	5 cut(s)	83, 260, 292, 304, 714
BstDEI	CTNAG	2 cut(s)	417, 918
BstDSI	CCRYGG	1 cut(s)	434
BstEII	GGTNACC	1 cut(s)	421
BstFNI	CGCG	3 cut(s)	111, 258, 260
BstHHI	GCGC	3 cut(s)	113, 260, 262
BstKTI	GATC	2 cut(s)	394, 658
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	391, 655
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 287, 303, 312
BstNSI	RCATGY	3 cut(s)	500, 520, 716
BstPI	GGTNACC	1 cut(s)	421
BstUI	CGCG	3 cut(s)	111, 258, 260
BstZ17I	GTATAC	1 cut(s)	765
BstZI	CGGCCG	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	315, 925
BtgI	CCRYGG	1 cut(s)	434
BtsI	GCAGTG	2 cut(s)	406, 702
BtsIMutI	CAGTG	3 cut(s)	406, 662, 702
Cac8I	GCNNGC	5 cut(s)	83, 260, 292, 304, 714
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	3 cut(s)	113, 260, 262
Cfr10I	RCCGGY	2 cut(s)	302, 311
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	376, 635
CviAII	CATG	5 cut(s)	435, 497, 517, 659, 713
CviQI	GTAC	2 cut(s)	376, 635
DdeI	CTNAG	2 cut(s)	417, 918
DpnI	GATC	2 cut(s)	393, 657
DpnII	GATC	2 cut(s)	391, 655
EaeI	YGGCCR	1 cut(s)	313
EagI	CGGCCG	1 cut(s)	313
EciI	GGCGGA	2 cut(s)	80, 268
EclXI	CGGCCG	1 cut(s)	313
Eco130I	CCWWGG	5 cut(s)	163, 434, 595, 758, 926
Eco52I	CGGCCG	1 cut(s)	313
Eco91I	GGTNACC	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	421
EcoT14I	CCWWGG	5 cut(s)	163, 434, 595, 758, 926
ErhI	CCWWGG	5 cut(s)	163, 434, 595, 758, 926
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	5 cut(s)	438, 500, 520, 662, 716
FatI	CATG	5 cut(s)	434, 496, 516, 658, 712
FauI	CCCGC	1 cut(s)	263
FbaI	TGATCA	2 cut(s)	391, 655
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	5 cut(s)	94, 114, 190, 295, 683
Fsp4HI	GCNGC	5 cut(s)	94, 114, 190, 295, 683
GlaI	GCGC	3 cut(s)	112, 259, 261
GluI	GCNGC	5 cut(s)	94, 114, 190, 295, 683
HaeIII	GGCC	2 cut(s)	315, 925
HapII	CCGG	3 cut(s)	303, 312, 824
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	3 cut(s)	113, 260, 262
Hin1II	CATG	5 cut(s)	438, 500, 520, 662, 716
Hin6I	GCGC	3 cut(s)	111, 258, 260
HinP1I	GCGC	3 cut(s)	111, 258, 260
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HinfI	GANTC	4 cut(s)	248, 334, 470, 534
HpaII	CCGG	3 cut(s)	303, 312, 824
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	199, 765, 877
Hpy188I	TCNGA	4 cut(s)	396, 475, 539, 655
Hpy188III	TCNNGA	4 cut(s)	179, 338, 467, 551
Hpy8I	GTNNAC	3 cut(s)	199, 765, 877
Hpy99I	CGWCG	3 cut(s)	189, 248, 287
HpyAV	CCTTC	3 cut(s)	49, 217, 857
HpyCH4III	ACNGT	2 cut(s)	172, 666
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	4 cut(s)	411, 662, 695, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 287, 303, 312
HpyF3I	CTNAG	2 cut(s)	417, 918
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	5 cut(s)	438, 500, 520, 662, 716
HspAI	GCGC	3 cut(s)	111, 258, 260
KpnI	GGTACC	1 cut(s)	638
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	2 cut(s)	391, 655
Kzo9I	GATC	2 cut(s)	391, 655
LmnI	GCTCC	4 cut(s)	4, 90, 267, 553
LweI	GCATC	2 cut(s)	669, 904
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	2 cut(s)	421, 800
MalI	GATC	2 cut(s)	393, 657
MboI	GATC	2 cut(s)	391, 655
MboII	GAAGA	1 cut(s)	745
MluCI	AATT	2 cut(s)	526, 573
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	775
MroNI	GCCGGC	1 cut(s)	302
MseI	TTAA	2 cut(s)	720, 903
MspI	CCGG	3 cut(s)	303, 312, 824
MvnI	CGCG	3 cut(s)	111, 258, 260
MwoI	GCNNNNNNNGC	4 cut(s)	259, 287, 303, 312
NaeI	GCCGGC	1 cut(s)	304
NcoI	CCATGG	1 cut(s)	434
NdeII	GATC	2 cut(s)	391, 655
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	5 cut(s)	438, 500, 520, 662, 716
NlaIV	GGNNCC	3 cut(s)	169, 307, 636
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	3 cut(s)	500, 520, 716
PaeI	GCATGC	1 cut(s)	716
PauI	GCGCGC	1 cut(s)	258
PciI	ACATGT	2 cut(s)	496, 516
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 243
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	3 cut(s)	334, 470, 534
PkrI	GCNGC	5 cut(s)	95, 115, 191, 296, 684
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PscI	ACATGT	2 cut(s)	496, 516
Psp1406I	AACGTT	1 cut(s)	320
PspEI	GGTNACC	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	169, 307, 636
PstNI	CAGNNNCTG	1 cut(s)	473
PteI	GCGCGC	1 cut(s)	258
RsaI	GTAC	2 cut(s)	377, 636
RsaNI	GTAC	2 cut(s)	376, 635
SaqAI	TTAA	2 cut(s)	720, 903
SatI	GCNGC	5 cut(s)	94, 114, 190, 295, 683
Sau3AI	GATC	2 cut(s)	391, 655
SchI	GAGTC	1 cut(s)	242
SfaNI	GCATC	2 cut(s)	669, 904
SphI	GCATGC	1 cut(s)	716
Sse9I	AATT	2 cut(s)	526, 573
StyI	CCWWGG	5 cut(s)	163, 434, 595, 758, 926
TaaI	ACNGT	2 cut(s)	172, 666
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	2 cut(s)	237, 243
TasI	AATT	2 cut(s)	526, 573
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	5 cut(s)	96, 116, 192, 297, 685
TfiI	GAWTC	3 cut(s)	334, 470, 534
Tru1I	TTAA	2 cut(s)	720, 903
Tru9I	TTAA	2 cut(s)	720, 903
TscAI	CASTG	3 cut(s)	413, 669, 702
TseFI	GTSAC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	421
TspGWI	ACGGA	2 cut(s)	139, 208
TspRI	CASTG	3 cut(s)	413, 669, 702
XceI	RCATGY	3 cut(s)	500, 520, 716
XmiI	GTMKAC	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.