RLG00000032102

Protein of unknown function (DUF1365)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013017
Physical Location & Seq
Forward (+)
10938957 .. 10941251
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032102

Sequence Viewer

Length: 918 bp
ATGGAGCTTCTCTATCTGCTCTGCTCAATCCTCTCCACCTTCCTCACTTCCCTCACTCTCTCTCTCCTCCTCCCGCTCCTCACGCTCCTCCGCCGCCTCTCCCCCTCACGCGCCGCCTCTTCCTCCTCCTCCGTCTCCCTCTACCAAGGCACCGTCTTTCACGAGCGTCGCCGCCCCGTCCACCACTCCTTCCGCTACTCCGTCCGCTACGCTCTCATCGACCTCGACGACTCTCCCCGCGCGCTCCCCAATCACCTCTCCGCCGACGAGGCTCGCCGCATTGCCGGCACCTCCGGCCGAACTTTGCTTTTGACGATTCCGGAAAGCGTGGGATATGAGCAGAACCCGTTGAGCTTGTACTACTGCTATGATAATCAGATTTTGAAGCAGTGCATTGCTGAGGTCACCAATACGCCATGGGGAGAAAGAGTGTTATTTGTTTTCAATCCAGATTCTGATTTAGTGGCTAAACCCCTACATGTCAGTCCTTTTATGGACATGTTTGGGAATTGGAGTATCAGAGCAAATGCTCCTGACAATACTCTGTTCGTTTCAATTTCAGTTCAACACCCTGACCTCGGAAACTATTTTACAGCTACCCTAAAAGCCAAAAGGGTACCCTCATCATTGGTGTCTGATCATGCACTGTTTTTCTGGTTGATGCCACATAAGGTTGCAGTGTGGATATATTGGCATGCCTTTAAACTATGGTGGAAGAATGTGGCATTTGTCCAACACCCAAGGTATACCAACCCTGCATATAGGGAGGAAGCTCTGGTTCGTAACCAGAAACTTCAATGCTGTCCGGCTATTGGATTGAACAAAGATAAACATCTGCGACATGAAGGATGTAGGGTCAACAAAGAAAATGAGGCTCGTTATATTAAATGGAGAGATGCTAAGTGGCCTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1365

Protein Analysis

306

Amino Acids

35.31

Weight (kDa)

9.34

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1365 PF07103 47 - 82 7.9e-08 Protein of unknown function (DUF1365)
DUF1365 PF07103 96 - 248 9.9e-39 Protein of unknown function (DUF1365)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30130 AT1G30130 AT1G30130
fragaria_vesca FvH4_3g05380 FvH4_3g05380
malus_domestica MD05G1282500.v1.1
prunus_persica Prupe.4G082300_v2.0.a1
pyrus_communis pycom10g21690
rosa_chinensis RchiOBHm_Chr5g0014371
rosa_laevigata RLG00000032102
rosa_multiflora Rmu_sc0000659.1_g000041
rosa_roxburghii Rroxscaffold_1G00062220
rosa_rugosa Rorug05G0017600
rosa_samantha Rh5AG112300 Rh5BG109000 Rh5CG120800 Rh5DG108000
rosa_wichuraiana Rw5G009740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 616
AccB1I GGYRCC 3 cut(s) 149, 287, 616
AccBSI CCGCTC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 746
AccII CGCG 3 cut(s) 111, 240, 242
AccIII TCCGGA 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 295
AfaI GTAC 2 cut(s) 359, 618
AfiI CCNNNNNNNGG 2 cut(s) 578, 812
AflIII ACRYGT 2 cut(s) 478, 498
AgsI TTSAA 6 cut(s) 385, 445, 555, 566, 797, 820
AluBI AGCT 4 cut(s) 7, 354, 596, 773
AluI AGCT 4 cut(s) 7, 354, 596, 773
Alw26I GTCTC 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 455
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 2 cut(s) 295, 905
Asp718I GGTACC 1 cut(s) 616
AspLEI GCGC 3 cut(s) 113, 242, 244
AsuHPI GGTGA 2 cut(s) 245, 397
BanI GGYRCC 3 cut(s) 149, 287, 616
BauI CACGAG 1 cut(s) 161
BbvCI CCTCAGC 1 cut(s) 399
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 139
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 4 cut(s) 94, 114, 172, 277
BlsI GCNGC 4 cut(s) 95, 115, 173, 278
BmiI GGNNCC 3 cut(s) 151, 289, 618
BmsI GCATC 2 cut(s) 651, 886
Bpu10I CCTNAGC 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 5 cut(s) 145, 416, 577, 740, 908
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 578, 812
Bse118I RCCGGY 1 cut(s) 284
Bse3DI GCAATG 2 cut(s) 279, 393
Bse8I GATNNNNATC 1 cut(s) 831
BseAI TCCGGA 1 cut(s) 319
BseDI CCNNGG 5 cut(s) 145, 416, 577, 740, 908
BseGI GGATG 1 cut(s) 854
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 2 cut(s) 578, 812
BseMI GCAATG 2 cut(s) 279, 393
BseMII CTCAG 1 cut(s) 390
BsePI GCGCGC 1 cut(s) 240
BseRI GAGGAG 6 cut(s) 56, 59, 68, 77, 115, 118
BseX3I CGGCCG 1 cut(s) 295
Bsh1236I CGCG 3 cut(s) 111, 240, 242
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 2 cut(s) 297, 907
BshNI GGYRCC 3 cut(s) 149, 287, 616
BsiEI CGRYCG 1 cut(s) 298
BsiSI CCGG 4 cut(s) 285, 294, 320, 806
BslI CCNNNNNNNGG 2 cut(s) 578, 812
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsnI GGCC 2 cut(s) 297, 907
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 1 cut(s) 637
Bsp19I CCATGG 1 cut(s) 416
BspANI GGCC 2 cut(s) 297, 907
BspCNI CTCAG 1 cut(s) 391
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 3 cut(s) 111, 240, 242
BspLI GGNNCC 3 cut(s) 151, 289, 618
BspT107I GGYRCC 3 cut(s) 149, 287, 616
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 2 cut(s) 279, 393
BsrFI RCCGGY 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 5 cut(s) 145, 416, 577, 740, 908
BssHII GCGCGC 1 cut(s) 240
BssMI GATC 1 cut(s) 637
BssNAI GTATAC 1 cut(s) 747
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 4 cut(s) 145, 416, 740, 908
Bst1107I GTATAC 1 cut(s) 747
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 154, 648
Bst6I CTCTTC 1 cut(s) 124
BstC8I GCNNGC 4 cut(s) 242, 274, 286, 696
BstDEI CTNAG 2 cut(s) 399, 900
BstDSI CCRYGG 1 cut(s) 416
BstEII GGTNACC 1 cut(s) 403
BstF5I GGATG 1 cut(s) 854
BstFNI CGCG 3 cut(s) 111, 240, 242
BstHHI GCGC 3 cut(s) 113, 242, 244
BstKTI GATC 1 cut(s) 640
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 1 cut(s) 637
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 4 cut(s) 82, 269, 285, 294
BstNSI RCATGY 3 cut(s) 482, 502, 698
BstPI GGTNACC 1 cut(s) 403
BstUI CGCG 3 cut(s) 111, 240, 242
BstZ17I GTATAC 1 cut(s) 747
BstZI CGGCCG 1 cut(s) 295
BsuRI GGCC 2 cut(s) 297, 907
BtgI CCRYGG 1 cut(s) 416
BtsCI GGATG 1 cut(s) 854
BtsI GCAGTG 2 cut(s) 395, 684
BtsIMutI CAGTG 3 cut(s) 395, 644, 684
Cac8I GCNNGC 4 cut(s) 242, 274, 286, 696
CaiI CAGNNNCTG 1 cut(s) 455
CfoI GCGC 3 cut(s) 113, 242, 244
Cfr10I RCCGGY 1 cut(s) 284
CseI GACGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 358, 617
CviAII CATG 6 cut(s) 417, 479, 499, 641, 695, 842
CviQI GTAC 2 cut(s) 358, 617
DdeI CTNAG 2 cut(s) 399, 900
DpnI GATC 1 cut(s) 639
DpnII GATC 1 cut(s) 637
DraI TTTAAA 1 cut(s) 703
EaeI YGGCCR 1 cut(s) 295
EagI CGGCCG 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
EciI GGCGGA 2 cut(s) 80, 250
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 4 cut(s) 145, 416, 740, 908
Eco52I CGGCCG 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 403
EcoO65I GGTNACC 1 cut(s) 403
EcoT14I CCWWGG 4 cut(s) 145, 416, 740, 908
ErhI CCWWGG 4 cut(s) 145, 416, 740, 908
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 6 cut(s) 420, 482, 502, 644, 698, 845
FatI CATG 6 cut(s) 416, 478, 498, 640, 694, 841
FauI CCCGC 2 cut(s) 81, 245
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 1 cut(s) 746
Fnu4HI GCNGC 4 cut(s) 94, 114, 172, 277
FokI GGATG 1 cut(s) 861
Fsp4HI GCNGC 4 cut(s) 94, 114, 172, 277
GlaI GCGC 3 cut(s) 112, 241, 243
GluI GCNGC 4 cut(s) 94, 114, 172, 277
HaeIII GGCC 2 cut(s) 297, 907
HapII CCGG 4 cut(s) 285, 294, 320, 806
HgaI GACGC 1 cut(s) 155
HhaI GCGC 3 cut(s) 113, 242, 244
Hin1II CATG 6 cut(s) 420, 482, 502, 644, 698, 845
Hin6I GCGC 3 cut(s) 111, 240, 242
HinP1I GCGC 3 cut(s) 111, 240, 242
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 3 cut(s) 230, 316, 452
HpaII CCGG 4 cut(s) 285, 294, 320, 806
HphI GGTGA 2 cut(s) 245, 397
Hpy166II GTNNAC 3 cut(s) 181, 747, 859
Hpy188I TCNGA 5 cut(s) 378, 457, 521, 581, 637
Hpy188III TCNNGA 4 cut(s) 161, 320, 449, 533
Hpy8I GTNNAC 3 cut(s) 181, 747, 859
Hpy99I CGWCG 3 cut(s) 171, 230, 269
HpyAV CCTTC 3 cut(s) 49, 199, 839
HpyCH4III ACNGT 2 cut(s) 154, 648
HpyCH4V TGCA 4 cut(s) 393, 644, 677, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 269, 285, 294
HpyF3I CTNAG 2 cut(s) 399, 900
Hsp92II CATG 6 cut(s) 420, 482, 502, 644, 698, 845
HspAI GCGC 3 cut(s) 111, 240, 242
Kpn2I TCCGGA 1 cut(s) 319
KpnI GGTACC 1 cut(s) 620
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 1 cut(s) 637
LmnI GCTCC 5 cut(s) 4, 81, 90, 249, 535
LweI GCATC 2 cut(s) 651, 886
MaeIII GTNAC 2 cut(s) 403, 782
MalI GATC 1 cut(s) 639
MbiI CCGCTC 1 cut(s) 76
MboI GATC 1 cut(s) 637
MboII GAAGA 2 cut(s) 111, 727
MluCI AATT 2 cut(s) 508, 555
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 757
MroI TCCGGA 1 cut(s) 319
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 2 cut(s) 702, 885
MspI CCGG 4 cut(s) 285, 294, 320, 806
MvnI CGCG 3 cut(s) 111, 240, 242
MwoI GCNNNNNNNGC 4 cut(s) 82, 269, 285, 294
NaeI GCCGGC 1 cut(s) 286
NcoI CCATGG 1 cut(s) 416
NdeII GATC 1 cut(s) 637
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 6 cut(s) 420, 482, 502, 644, 698, 845
NlaIV GGNNCC 3 cut(s) 151, 289, 618
NmuCI GTSAC 1 cut(s) 403
NspI RCATGY 3 cut(s) 482, 502, 698
PaeI GCATGC 1 cut(s) 698
PauI GCGCGC 1 cut(s) 240
PciI ACATGT 2 cut(s) 478, 498
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 225
PdiI GCCGGC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 316, 452
PkrI GCNGC 4 cut(s) 95, 115, 173, 278
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PscI ACATGT 2 cut(s) 478, 498
PspEI GGTNACC 1 cut(s) 403
PspN4I GGNNCC 3 cut(s) 151, 289, 618
PstNI CAGNNNCTG 1 cut(s) 455
PteI GCGCGC 1 cut(s) 240
RsaI GTAC 2 cut(s) 359, 618
RsaNI GTAC 2 cut(s) 358, 617
SaqAI TTAA 2 cut(s) 702, 885
SatI GCNGC 4 cut(s) 94, 114, 172, 277
Sau3AI GATC 1 cut(s) 637
SchI GAGTC 1 cut(s) 224
SfaNI GCATC 2 cut(s) 651, 886
SphI GCATGC 1 cut(s) 698
Sse9I AATT 2 cut(s) 508, 555
StyI CCWWGG 4 cut(s) 145, 416, 740, 908
TaaI ACNGT 2 cut(s) 154, 648
TaqI TCGA 2 cut(s) 219, 225
TasI AATT 2 cut(s) 508, 555
TatI WGTACW 1 cut(s) 357
TauI GCSGC 4 cut(s) 96, 116, 174, 279
TfiI GAWTC 2 cut(s) 316, 452
Tru1I TTAA 2 cut(s) 702, 885
Tru9I TTAA 2 cut(s) 702, 885
TscAI CASTG 3 cut(s) 395, 651, 684
TseFI GTSAC 1 cut(s) 403
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 858
TspGWI ACGGA 2 cut(s) 121, 190
TspRI CASTG 3 cut(s) 395, 651, 684
XceI RCATGY 3 cut(s) 482, 502, 698
XmiI GTMKAC 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.