Rroxscaffold_1G00062220

Protein of unknown function (DUF1365)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
84267845 .. 84270367
2523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062220.1

Sequence Viewer

Length: 933 bp
ATGGAGCTTCTCTATCTGCTCTGCTCAATCCTCTCCACCTTCCTCACTTCCCTCACTCTCTCTCTCCTCCTCCCACTCCGCACGCTCCTCCGCCGCCTCTCCCCCTCAAGCGCCGCCTCTCCCTCCTCCTCCTCCGTCTCCCTCTACCAAGGCACCGTCTTTCACGAGCGTCGCCGCCCCGTCCACCACTCCTTCCGCTACTCCGTCCGCTACGCGCTCATCGACCTCGACGACTCTCCCCGCCCGCTCCCCAACCACCTCTCCGCCGACGAGGCTCGCCGCATTGCCGGCACCTCCGGCCGAACGTTGCTTTTGACGATTCCTGAAAGCGTGGGATATGAGCAGAACCCGTTGAGCTTGTACTACTGCTATGATGATCAGATTTTGAAGCAGTGCATTGCTGAGGTCACCAATACGCCATGGGGAGAAAGAGTGTTATTTGTTTTCAATCCAGATTCTGATTTAGTGGCTAAACCACTACATGTCAGTCCTTTTATGGACATGTTTGGGAATTGGAGTATCAGAGCAAATGCTCCTGACAATACTCTGTTCGTTTCAATTTCAGTTCAACACCCTGACCTCGGAAACTATTTTACAGCTACCCTAAAAGCCAAAAGGGTACCCTCATCATTGGTGTCTGATCATGCACTGTTTTTCTGGTTGATGCCACATAAGGTTGCAGTGTGGATATATTGGCATGCCTTTAAACTATGGTGGAAGAATGTGGCATTTGTCCAACACCCAAGGTATACCAACCCTGCATATAGGGAGGAAGCTCTGGTTCGTAACCAGAAACTTCAATGCTGTCCGGCTATTGGATTGGACAAAGATAAACATCTCCGACTTGAAGGAAGTAGTCAAGGATGTAGGGTCAACAAAGAAAGTGAGGCTCGTTATATTAAATGGAGAGATGCTAAGTGGCCTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

310

Amino Acids

35.71

Weight (kDa)

9.16

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1365 PF07103 48 - 81 1.6e-07 Protein of unknown function (DUF1365)
DUF1365 PF07103 98 - 249 8.9e-39 Protein of unknown function (DUF1365)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30130 AT1G30130 AT1G30130
fragaria_vesca FvH4_3g05380 FvH4_3g05380
malus_domestica MD05G1282500.v1.1
prunus_persica Prupe.4G082300_v2.0.a1
pyrus_communis pycom10g21690
rosa_chinensis RchiOBHm_Chr5g0014371
rosa_laevigata RLG00000032102
rosa_multiflora Rmu_sc0000659.1_g000041
rosa_roxburghii Rroxscaffold_1G00062220
rosa_rugosa Rorug05G0017600
rosa_samantha Rh5AG112300 Rh5BG109000 Rh5CG120800 Rh5DG108000
rosa_wichuraiana Rw5G009740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 619
AccB1I GGYRCC 3 cut(s) 152, 290, 619
AccBSI CCGCTC 1 cut(s) 247
AccI GTMKAC 1 cut(s) 749
AccII CGCG 1 cut(s) 215
AclI AACGTT 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 298
AfaI GTAC 2 cut(s) 362, 621
AfiI CCNNNNNNNGG 2 cut(s) 581, 815
AflIII ACRYGT 2 cut(s) 481, 501
AgsI TTSAA 6 cut(s) 388, 448, 558, 569, 800, 848
AluBI AGCT 4 cut(s) 7, 357, 599, 776
AluI AGCT 4 cut(s) 7, 357, 599, 776
Alw26I GTCTC 1 cut(s) 142
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 2 cut(s) 298, 920
Asp718I GGTACC 1 cut(s) 619
AspLEI GCGC 2 cut(s) 113, 217
AsuHPI GGTGA 1 cut(s) 400
BanI GGYRCC 3 cut(s) 152, 290, 619
BauI CACGAG 1 cut(s) 164
BbvCI CCTCAGC 1 cut(s) 402
BclI TGATCA 2 cut(s) 376, 640
BcoDI GTCTC 1 cut(s) 142
BfoI RGCGCY 1 cut(s) 114
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 4 cut(s) 94, 114, 175, 280
BlsI GCNGC 4 cut(s) 95, 115, 176, 281
BmiI GGNNCC 3 cut(s) 154, 292, 621
BmsI GCATC 2 cut(s) 654, 901
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 834
BsaJI CCNNGG 5 cut(s) 148, 419, 580, 743, 923
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 581, 815
Bse118I RCCGGY 1 cut(s) 287
Bse3DI GCAATG 2 cut(s) 282, 396
Bse8I GATNNNNATC 1 cut(s) 834
BseDI CCNNGG 5 cut(s) 148, 419, 580, 743, 923
BseGI GGATG 1 cut(s) 869
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 2 cut(s) 581, 815
BseMI GCAATG 2 cut(s) 282, 396
BseMII CTCAG 1 cut(s) 393
BseRI GAGGAG 6 cut(s) 56, 59, 77, 115, 118, 121
BseX3I CGGCCG 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 2 cut(s) 300, 922
BshNI GGYRCC 3 cut(s) 152, 290, 619
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 3 cut(s) 288, 297, 809
BslI CCNNNNNNNGG 2 cut(s) 581, 815
BsmAI GTCTC 1 cut(s) 142
BsmBI CGTCTC 1 cut(s) 142
BsnI GGCC 2 cut(s) 300, 922
Bsp143I GATC 2 cut(s) 376, 640
Bsp19I CCATGG 1 cut(s) 419
BspANI GGCC 2 cut(s) 300, 922
BspCNI CTCAG 1 cut(s) 394
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 3 cut(s) 154, 292, 621
BspT107I GGYRCC 3 cut(s) 152, 290, 619
BsrBI CCGCTC 1 cut(s) 247
BsrDI GCAATG 2 cut(s) 282, 396
BsrFI RCCGGY 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 5 cut(s) 148, 419, 580, 743, 923
BssMI GATC 2 cut(s) 376, 640
BssNAI GTATAC 1 cut(s) 750
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 4 cut(s) 148, 419, 743, 923
Bst1107I GTATAC 1 cut(s) 750
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 157, 651
BstC8I GCNNGC 5 cut(s) 83, 245, 277, 289, 699
BstDEI CTNAG 2 cut(s) 402, 915
BstDSI CCRYGG 1 cut(s) 419
BstEII GGTNACC 1 cut(s) 406
BstF5I GGATG 1 cut(s) 869
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 2 cut(s) 113, 217
BstKTI GATC 2 cut(s) 379, 643
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 2 cut(s) 376, 640
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 272, 288, 297
BstNSI RCATGY 3 cut(s) 485, 505, 701
BstPI GGTNACC 1 cut(s) 406
BstUI CGCG 1 cut(s) 215
BstZ17I GTATAC 1 cut(s) 750
BstZI CGGCCG 1 cut(s) 298
BsuRI GGCC 2 cut(s) 300, 922
BtgI CCRYGG 1 cut(s) 419
BtsCI GGATG 1 cut(s) 869
BtsI GCAGTG 2 cut(s) 398, 687
BtsIMutI CAGTG 3 cut(s) 398, 647, 687
Cac8I GCNNGC 5 cut(s) 83, 245, 277, 289, 699
CaiI CAGNNNCTG 1 cut(s) 458
CfoI GCGC 2 cut(s) 113, 217
Cfr10I RCCGGY 1 cut(s) 287
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 361, 620
CviAII CATG 5 cut(s) 420, 482, 502, 644, 698
CviQI GTAC 2 cut(s) 361, 620
DdeI CTNAG 2 cut(s) 402, 915
DpnI GATC 2 cut(s) 378, 642
DpnII GATC 2 cut(s) 376, 640
DraI TTTAAA 1 cut(s) 706
EaeI YGGCCR 1 cut(s) 298
EagI CGGCCG 1 cut(s) 298
EciI GGCGGA 2 cut(s) 80, 253
EclXI CGGCCG 1 cut(s) 298
Eco130I CCWWGG 4 cut(s) 148, 419, 743, 923
Eco52I CGGCCG 1 cut(s) 298
Eco91I GGTNACC 1 cut(s) 406
EcoO65I GGTNACC 1 cut(s) 406
EcoT14I CCWWGG 4 cut(s) 148, 419, 743, 923
ErhI CCWWGG 4 cut(s) 148, 419, 743, 923
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 5 cut(s) 423, 485, 505, 647, 701
FatI CATG 5 cut(s) 419, 481, 501, 643, 697
FauI CCCGC 2 cut(s) 248, 252
FbaI TGATCA 2 cut(s) 376, 640
FblI GTMKAC 1 cut(s) 749
Fnu4HI GCNGC 4 cut(s) 94, 114, 175, 280
FokI GGATG 1 cut(s) 876
Fsp4HI GCNGC 4 cut(s) 94, 114, 175, 280
GlaI GCGC 2 cut(s) 112, 216
GluI GCNGC 4 cut(s) 94, 114, 175, 280
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 2 cut(s) 300, 922
HapII CCGG 3 cut(s) 288, 297, 809
HgaI GACGC 1 cut(s) 158
HhaI GCGC 2 cut(s) 113, 217
Hin1II CATG 5 cut(s) 423, 485, 505, 647, 701
Hin6I GCGC 2 cut(s) 111, 215
HinP1I GCGC 2 cut(s) 111, 215
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HinfI GANTC 3 cut(s) 233, 319, 455
HpaII CCGG 3 cut(s) 288, 297, 809
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 3 cut(s) 184, 750, 874
Hpy188I TCNGA 6 cut(s) 381, 460, 524, 584, 640, 842
Hpy188III TCNNGA 4 cut(s) 164, 323, 452, 536
Hpy8I GTNNAC 3 cut(s) 184, 750, 874
Hpy99I CGWCG 3 cut(s) 174, 233, 272
HpyAV CCTTC 3 cut(s) 49, 202, 842
HpyCH4III ACNGT 2 cut(s) 157, 651
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 4 cut(s) 396, 647, 680, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 288, 297
HpyF3I CTNAG 2 cut(s) 402, 915
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 5 cut(s) 423, 485, 505, 647, 701
HspAI GCGC 2 cut(s) 111, 215
KpnI GGTACC 1 cut(s) 623
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Ksp22I TGATCA 2 cut(s) 376, 640
Kzo9I GATC 2 cut(s) 376, 640
LmnI GCTCC 4 cut(s) 4, 90, 252, 538
LweI GCATC 2 cut(s) 654, 901
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 406, 785
MalI GATC 2 cut(s) 378, 642
MbiI CCGCTC 1 cut(s) 247
MboI GATC 2 cut(s) 376, 640
MboII GAAGA 1 cut(s) 730
MluCI AATT 2 cut(s) 511, 558
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 2 cut(s) 760, 865
MroNI GCCGGC 1 cut(s) 287
MseI TTAA 2 cut(s) 705, 900
MspI CCGG 3 cut(s) 288, 297, 809
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 3 cut(s) 272, 288, 297
NaeI GCCGGC 1 cut(s) 289
NcoI CCATGG 1 cut(s) 419
NdeII GATC 2 cut(s) 376, 640
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 5 cut(s) 423, 485, 505, 647, 701
NlaIV GGNNCC 3 cut(s) 154, 292, 621
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 3 cut(s) 485, 505, 701
PaeI GCATGC 1 cut(s) 701
PciI ACATGT 2 cut(s) 481, 501
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 228
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 2 cut(s) 319, 455
PkrI GCNGC 4 cut(s) 95, 115, 176, 281
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 2 cut(s) 481, 501
Psp1406I AACGTT 1 cut(s) 305
PspEI GGTNACC 1 cut(s) 406
PspN4I GGNNCC 3 cut(s) 154, 292, 621
PstNI CAGNNNCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 362, 621
RsaNI GTAC 2 cut(s) 361, 620
SaqAI TTAA 2 cut(s) 705, 900
SatI GCNGC 4 cut(s) 94, 114, 175, 280
Sau3AI GATC 2 cut(s) 376, 640
SchI GAGTC 1 cut(s) 227
SfaNI GCATC 2 cut(s) 654, 901
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
SphI GCATGC 1 cut(s) 701
Sse9I AATT 2 cut(s) 511, 558
StyI CCWWGG 4 cut(s) 148, 419, 743, 923
TaaI ACNGT 2 cut(s) 157, 651
TaiI ACGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 222, 228
TasI AATT 2 cut(s) 511, 558
TatI WGTACW 1 cut(s) 360
TauI GCSGC 4 cut(s) 96, 116, 177, 282
TfiI GAWTC 2 cut(s) 319, 455
Tru1I TTAA 2 cut(s) 705, 900
Tru9I TTAA 2 cut(s) 705, 900
TscAI CASTG 3 cut(s) 398, 654, 687
TseFI GTSAC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 406
TspGWI ACGGA 2 cut(s) 124, 193
TspRI CASTG 3 cut(s) 398, 654, 687
XceI RCATGY 3 cut(s) 485, 505, 701
XmiI GTMKAC 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.