Rh5DG108000

Protein of unknown function (DUF1365)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
9815320 .. 9817700
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG108000.1

Sequence Viewer

Length: 921 bp
ATGGAGCTTCTCTATCTGCTCTGCTCAATCCTCTGCACCTTCCTCACTTCCCTCACTCTCTCTCTCCTCCTCGCACTCCGCACGCTCCTCCGCCGCCTCTCCCCCTCACGCGCCGCCTCTCCCTCCTCCTCCTCCGTCTCCCTCTACCAAGGCACCGTCTTTCACGAGCGTCGCCGCCCCGTCCTCCACTCCTTCCGCTACTCCGTCCGCTACGCTCTCATCGACCTCGACGACTCGCCCCGCGCGCTCCCCAACCACCTCTCCGCCGACGAGGCTCGCCGCATTGCCGGCACCACCGGCCGAACGTTGCTTTTGACGATTCCTGAAAGCGTGGGATATGAGCAGAACCCGTTGAGCTTGTACTACTGCTATGATAATCAGATTTTGAAGCAGTGCATTGCTGAGGTCACCAATACGCCATGGGGAGAAAGAGTGTTATTTGTTTTCAATCCAGATTCTGATTTAGTGGCTAAACCACTACATGTCAGTCCTTTTATGGACATGTTTGGGAATTGGAGTATCAGAGCAAATGCTCCTGACAATACTCTGTTCGTTTCAATTTCAGTTCAACACCCTGACCTTGGAAACTATTTTACAGCTACCCTAAAAGCCAAAAGGGTACCCTCATCATTGGTGTCTGACCATGCACTGTTTTTCTGGTTGATGCCGCATAAGGTTGCAGTGTGGATATATTGGCATGCCATTAAACTTTGGTGGAAGAATGTGGCATTTGTCCAACACCCAAGGTATGCCAACCCTGCATATAGGGAGGAAGCTCTGGTTCGTAACCAGAAACTTCAATGCTGTCCGGCTATTGGATTGGACAAAGATAAACATCTGCGACTTGAAGGAAGTAGGGTCAACAAAGAAAGTGAGGCTCGTTATATTAAATGGAGAGATGCTAAGTGGCCTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

306

Amino Acids

35.3

Weight (kDa)

9.34

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1365 PF07103 48 - 82 3e-07 Protein of unknown function (DUF1365)
DUF1365 PF07103 97 - 249 8.5e-39 Protein of unknown function (DUF1365)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30130 AT1G30130 AT1G30130
fragaria_vesca FvH4_3g05380 FvH4_3g05380
malus_domestica MD05G1282500.v1.1
prunus_persica Prupe.4G082300_v2.0.a1
pyrus_communis pycom10g21690
rosa_chinensis RchiOBHm_Chr5g0014371
rosa_laevigata RLG00000032102
rosa_multiflora Rmu_sc0000659.1_g000041
rosa_roxburghii Rroxscaffold_1G00062220
rosa_rugosa Rorug05G0017600
rosa_samantha Rh5AG112300 Rh5BG109000 Rh5CG120800 Rh5DG108000
rosa_wichuraiana Rw5G009740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 619
AccB1I GGYRCC 3 cut(s) 152, 290, 619
AccII CGCG 3 cut(s) 111, 243, 245
AclI AACGTT 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 298
AfaI GTAC 2 cut(s) 362, 621
AfiI CCNNNNNNNGG 2 cut(s) 581, 815
AflIII ACRYGT 2 cut(s) 481, 501
AgsI TTSAA 6 cut(s) 388, 448, 558, 569, 800, 848
AluBI AGCT 4 cut(s) 7, 357, 599, 776
AluI AGCT 4 cut(s) 7, 357, 599, 776
Alw26I GTCTC 1 cut(s) 142
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 2 cut(s) 298, 908
Asp718I GGTACC 1 cut(s) 619
AspLEI GCGC 3 cut(s) 113, 245, 247
AsuHPI GGTGA 1 cut(s) 400
BanI GGYRCC 3 cut(s) 152, 290, 619
BauI CACGAG 1 cut(s) 164
BbvCI CCTCAGC 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 5 cut(s) 94, 114, 175, 280, 668
BlsI GCNGC 5 cut(s) 95, 115, 176, 281, 669
BmiI GGNNCC 3 cut(s) 154, 292, 621
BmsI GCATC 2 cut(s) 654, 889
Bpu10I CCTNAGC 1 cut(s) 402
BsaBI GATNNNNATC 1 cut(s) 834
BsaJI CCNNGG 5 cut(s) 148, 419, 580, 743, 911
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 581, 815
Bse118I RCCGGY 2 cut(s) 287, 296
Bse3DI GCAATG 2 cut(s) 282, 396
Bse8I GATNNNNATC 1 cut(s) 834
BseDI CCNNGG 5 cut(s) 148, 419, 580, 743, 911
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 2 cut(s) 581, 815
BseMI GCAATG 2 cut(s) 282, 396
BseMII CTCAG 1 cut(s) 393
BsePI GCGCGC 1 cut(s) 243
BseRI GAGGAG 6 cut(s) 56, 59, 77, 115, 118, 121
BseX3I CGGCCG 1 cut(s) 298
BsgI GTGCAG 1 cut(s) 19
Bsh1236I CGCG 3 cut(s) 111, 243, 245
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 2 cut(s) 300, 910
BshNI GGYRCC 3 cut(s) 152, 290, 619
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 3 cut(s) 288, 297, 809
BslI CCNNNNNNNGG 2 cut(s) 581, 815
BsmAI GTCTC 1 cut(s) 142
BsmBI CGTCTC 1 cut(s) 142
BsnI GGCC 2 cut(s) 300, 910
Bsp19I CCATGG 1 cut(s) 419
BspANI GGCC 2 cut(s) 300, 910
BspCNI CTCAG 1 cut(s) 394
BspFNI CGCG 3 cut(s) 111, 243, 245
BspLI GGNNCC 3 cut(s) 154, 292, 621
BspT107I GGYRCC 3 cut(s) 152, 290, 619
BsrDI GCAATG 2 cut(s) 282, 396
BsrFI RCCGGY 2 cut(s) 287, 296
BssAI RCCGGY 2 cut(s) 287, 296
BssECI CCNNGG 5 cut(s) 148, 419, 580, 743, 911
BssHII GCGCGC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 5 cut(s) 148, 419, 580, 743, 911
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 157, 651
BstC8I GCNNGC 5 cut(s) 83, 245, 277, 289, 699
BstDEI CTNAG 2 cut(s) 402, 903
BstDSI CCRYGG 1 cut(s) 419
BstEII GGTNACC 1 cut(s) 406
BstFNI CGCG 3 cut(s) 111, 243, 245
BstHHI GCGC 3 cut(s) 113, 245, 247
BstMAI GTCTC 1 cut(s) 142
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 5 cut(s) 244, 272, 288, 297, 758
BstNSI RCATGY 3 cut(s) 485, 505, 701
BstPI GGTNACC 1 cut(s) 406
BstUI CGCG 3 cut(s) 111, 243, 245
BstZI CGGCCG 1 cut(s) 298
BsuRI GGCC 2 cut(s) 300, 910
BtgI CCRYGG 1 cut(s) 419
BtsI GCAGTG 2 cut(s) 398, 687
BtsIMutI CAGTG 3 cut(s) 398, 647, 687
Cac8I GCNNGC 5 cut(s) 83, 245, 277, 289, 699
CaiI CAGNNNCTG 1 cut(s) 458
CfoI GCGC 3 cut(s) 113, 245, 247
Cfr10I RCCGGY 2 cut(s) 287, 296
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 361, 620
CviAII CATG 5 cut(s) 420, 482, 502, 644, 698
CviQI GTAC 2 cut(s) 361, 620
DdeI CTNAG 2 cut(s) 402, 903
EaeI YGGCCR 1 cut(s) 298
EagI CGGCCG 1 cut(s) 298
EciI GGCGGA 2 cut(s) 80, 253
EclXI CGGCCG 1 cut(s) 298
Eco130I CCWWGG 5 cut(s) 148, 419, 580, 743, 911
Eco52I CGGCCG 1 cut(s) 298
Eco91I GGTNACC 1 cut(s) 406
EcoO65I GGTNACC 1 cut(s) 406
EcoT14I CCWWGG 5 cut(s) 148, 419, 580, 743, 911
ErhI CCWWGG 5 cut(s) 148, 419, 580, 743, 911
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 5 cut(s) 423, 485, 505, 647, 701
FatI CATG 5 cut(s) 419, 481, 501, 643, 697
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 5 cut(s) 94, 114, 175, 280, 668
Fsp4HI GCNGC 5 cut(s) 94, 114, 175, 280, 668
GlaI GCGC 3 cut(s) 112, 244, 246
GluI GCNGC 5 cut(s) 94, 114, 175, 280, 668
HaeIII GGCC 2 cut(s) 300, 910
HapII CCGG 3 cut(s) 288, 297, 809
HgaI GACGC 1 cut(s) 158
HhaI GCGC 3 cut(s) 113, 245, 247
Hin1II CATG 5 cut(s) 423, 485, 505, 647, 701
Hin6I GCGC 3 cut(s) 111, 243, 245
HinP1I GCGC 3 cut(s) 111, 243, 245
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HinfI GANTC 3 cut(s) 233, 319, 455
HpaII CCGG 3 cut(s) 288, 297, 809
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 862
Hpy188I TCNGA 4 cut(s) 381, 460, 524, 640
Hpy188III TCNNGA 4 cut(s) 164, 323, 452, 536
Hpy8I GTNNAC 1 cut(s) 862
Hpy99I CGWCG 3 cut(s) 174, 233, 272
HpyAV CCTTC 3 cut(s) 49, 202, 842
HpyCH4III ACNGT 2 cut(s) 157, 651
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 5 cut(s) 36, 396, 647, 680, 761
HpyF10VI GCNNNNNNNGC 5 cut(s) 244, 272, 288, 297, 758
HpyF3I CTNAG 2 cut(s) 402, 903
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 5 cut(s) 423, 485, 505, 647, 701
HspAI GCGC 3 cut(s) 111, 243, 245
KpnI GGTACC 1 cut(s) 623
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
LmnI GCTCC 4 cut(s) 4, 90, 252, 538
LweI GCATC 2 cut(s) 654, 889
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 406, 785
MboII GAAGA 1 cut(s) 730
MluCI AATT 2 cut(s) 511, 558
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 760
MroNI GCCGGC 1 cut(s) 287
MseI TTAA 2 cut(s) 705, 888
MspI CCGG 3 cut(s) 288, 297, 809
MvnI CGCG 3 cut(s) 111, 243, 245
MwoI GCNNNNNNNGC 5 cut(s) 244, 272, 288, 297, 758
NaeI GCCGGC 1 cut(s) 289
NcoI CCATGG 1 cut(s) 419
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 5 cut(s) 423, 485, 505, 647, 701
NlaIV GGNNCC 3 cut(s) 154, 292, 621
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 3 cut(s) 485, 505, 701
PaeI GCATGC 1 cut(s) 701
PauI GCGCGC 1 cut(s) 243
PciI ACATGT 2 cut(s) 481, 501
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 228
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 2 cut(s) 319, 455
PkrI GCNGC 5 cut(s) 95, 115, 176, 281, 669
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 2 cut(s) 481, 501
Psp1406I AACGTT 1 cut(s) 305
PspEI GGTNACC 1 cut(s) 406
PspN4I GGNNCC 3 cut(s) 154, 292, 621
PstNI CAGNNNCTG 1 cut(s) 458
PteI GCGCGC 1 cut(s) 243
RsaI GTAC 2 cut(s) 362, 621
RsaNI GTAC 2 cut(s) 361, 620
SaqAI TTAA 2 cut(s) 705, 888
SatI GCNGC 5 cut(s) 94, 114, 175, 280, 668
SchI GAGTC 1 cut(s) 227
SfaNI GCATC 2 cut(s) 654, 889
SphI GCATGC 1 cut(s) 701
Sse9I AATT 2 cut(s) 511, 558
StyI CCWWGG 5 cut(s) 148, 419, 580, 743, 911
TaaI ACNGT 2 cut(s) 157, 651
TaiI ACGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 222, 228
TasI AATT 2 cut(s) 511, 558
TatI WGTACW 1 cut(s) 360
TauI GCSGC 5 cut(s) 96, 116, 177, 282, 670
TfiI GAWTC 2 cut(s) 319, 455
Tru1I TTAA 2 cut(s) 705, 888
Tru9I TTAA 2 cut(s) 705, 888
TscAI CASTG 3 cut(s) 398, 654, 687
TseFI GTSAC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 406
TspGWI ACGGA 2 cut(s) 124, 193
TspRI CASTG 3 cut(s) 398, 654, 687
XceI RCATGY 3 cut(s) 485, 505, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.