FvH4_3g07520

protein At1g04910-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006470
Physical Location & Seq
Forward (+)
4450041 .. 4453280
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07520.t3

Sequence Viewer

Length: 1845 bp
ATGGGAAAGCAAGGGAGTAAGGAATATGATCCTTCTAATGTTGGGAGGAGAATGTCAGGTGGAGATTACAGTTTGAGTTCCAAAATGTTGTGGCTTCATGGTCTTCAAAGTCATGATTTTCATGTTCTACGAAATGATTCCATGAAGTATAGTTCTTGTAAGGGAAGCTTTGTGGGGAAAAAGCATCTGTGGCTCCGGAAAGATGTGAAGTCAGTCGTTTTTGTGTTTGTTTTGATGAGTTTCCTTATCCTGCTTGATTCTTTTCTGGTGTCCTTTTTCGATTCCATGATTCTTCAGAACGGTTCCACTGTAAGAAAATCTCCGGGACTTAAGGAGGAGGAAAGGGATGCCTACATTATGAAAGAAAAATCACCAGTTCAGATGTATGATCGCCTTCTAAAACTGGCATCCATATCCCTTGCTAAGAAAGAGTTCAAGCAAGAGTCATCAACCTTATGGGAAGAACCAAATAGGAGTCAAGTTGCTGCATGGAAACCTTGTGCAGATAGAAAAGTTGCCAAAAGCCTAGGAATATATAAGAAAAGTAATGGCTATATACTAATCAGTGCAAATGGCGGTCTCAATCAACAACGAGTTGCTATTTGCAATGCTGTTGCTGTGGCATCTCTTCTGAATGCTACTCTTGTTATTCCAAGATTTCTTTACAGCAATGTGTGGAATGATCCGAGCCAATTTGGTGATATTTACCAAGAAGAATACTTTATAGATGTAATGAAGGATGAAGTAGACATTGTCAAGGAGCTCCCTTCTCATTTGGCATCACTAGACCTTGAAGCAATTGGTAGCCTTATTACTGATGCAGACCTTGTGAAGGAGGCTAAACCGACTGATTATGTTAGAACAGTGCTTCCTATTCTCTTAAAAAATGGAGTTGTTCACTTCCTGGGATATGGGAATCGACTAGGCTTTGATCCATTGCCTTCTGAGCTTCAGAGACTAAGATGCAAATGCAACTTCCATGCCTTGAAATTCGTTCCTGAAATCCAACATGTTGGTTCTTTGTTGGTTAGAAGGATAAGAAAATACGATGCTGCACTGAGTGTGCTGGACAAACAACTTCTTGGAAACTTCATGCACAGCATTGACTCAAAACGGCATGATGCTGCAGCAAGAGGCCCGTTCAAATATCTTGCTCTACACTTGAGATTCGAGATTGACATGGTAGCCTACTCGCTCTGTGATTTTGGAGGTGGAGAAAGTGAGAGAAATGAACTTCAAGCATACAGAGAAATCCATTTTCCTCTGCTCATCGAGCGCTTGAAGAACTCAAAGTCTGTTTCTCAAAGTGAGTTAAGAAAGTTGGGAAAATGTCCATTGACACCGGAAGAAGCAGCTCTAGTACTTGCTGGTTTAGGTTTTAAGCATAGAACTTACATATACCTAGCTGGATCTCAAATATATGGTGGAAACTCAAGGATGAATTCCTTCACCAACCTCTATCCTAATTTGGTCACAAAGGAAACTCTCCTCACACCAAGAGAACTTGCACCTTTTCAAAACTTCTCTTCCAAGTTAGCAGCATTAGACTTCATTGCCTGTGCAACTTCTGATGTTTTCGCTATGACTGACTCGGGGAGCCAATTATCCTCCCTGGTATCTGGATTTCGAACCTATTATGGTGGTGGTAGTGCTCCTACCCTACGGCCTAACAAGAAGAGGCTAGCTGCAATTTTGTCTGAGAATAGTACCATGGGCTGGAATAGTTTTGAAGACAGAGTTAAGAAGATGATTGAGGAAGGTCAAAGGGTACATGTAAGGAGGTTTGGTCGAAGCATATATCGACAGCCAAGATGCCCGCAGTGCATGTGTAAATCCTACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

615

Amino Acids

69.27

Weight (kDa)

9.34

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 185 - 513 3.2e-84 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1716
AccI GTMKAC 1 cut(s) 747
AccIII TCCGGA 1 cut(s) 195
AciI CCGC 2 cut(s) 576, 1817
AclWI GGATC 4 cut(s) 23, 677, 926, 1417
AcsI RAATTY 2 cut(s) 989, 1441
AcuI CTGAAG 2 cut(s) 278, 935
AdeI CACNNNGTG 1 cut(s) 1061
AfaI GTAC 3 cut(s) 1362, 1708, 1770
AfeI AGCGCT 1 cut(s) 1277
AfiI CCNNNNNNNGG 2 cut(s) 832, 1716
AflII CTTAAG 1 cut(s) 329
AflIII ACRYGT 2 cut(s) 1009, 1771
AgsI TTSAA 9 cut(s) 107, 436, 794, 988, 1144, 1238, 1282, 1517, 1730
AjnI CCWGG 2 cut(s) 903, 1611
AloI GAACNNNNNNTCC 2 cut(s) 853, 885
AluBI AGCT 6 cut(s) 168, 763, 949, 1355, 1406, 1685
AluI AGCT 6 cut(s) 168, 763, 949, 1355, 1406, 1685
Alw21I GWGCWC 2 cut(s) 765, 1654
Alw26I GTCTC 2 cut(s) 584, 949
AlwI GGATC 4 cut(s) 23, 677, 926, 1417
Ama87I CYCGRG 1 cut(s) 1591
Aor13HI TCCGGA 1 cut(s) 195
Aor51HI AGCGCT 1 cut(s) 1277
AoxI GGCC 2 cut(s) 1135, 1664
ApeKI GCWGC 7 cut(s) 485, 1052, 1124, 1127, 1352, 1538, 1685
ApoI RAATTY 2 cut(s) 989, 1441
Asp700I GAANNNNTTC 3 cut(s) 136, 431, 1445
AspA2I CCTAGG 1 cut(s) 526
AspLEI GCGC 1 cut(s) 1278
AspS9I GGNCC 1 cut(s) 1136
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 3 cut(s) 363, 710, 1441
AsuII TTCGAA 1 cut(s) 1627
AsuNHI GCTAGC 1 cut(s) 1681
AvaI CYCGRG 1 cut(s) 1591
AvrII CCTAGG 1 cut(s) 526
BanII GRGCYC 1 cut(s) 765
BbsI GAAGAC 2 cut(s) 95, 1737
Bbv12I GWGCWC 2 cut(s) 765, 1654
BbvI GCAGC 7 cut(s) 472, 1039, 1111, 1139, 1364, 1550, 1672
BceAI ACGGC 2 cut(s) 1130, 1679
BciT130I CCWGG 2 cut(s) 905, 1613
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 584, 949
BfaI CTAG 6 cut(s) 527, 785, 923, 1358, 1403, 1682
BfmI CTRYAG 1 cut(s) 1125
BfoI RGCGCY 1 cut(s) 1279
BfrI CTTAAG 1 cut(s) 329
BisI GCNGC 7 cut(s) 486, 1053, 1125, 1128, 1353, 1539, 1686
BlnI CCTAGG 1 cut(s) 526
BlsI GCNGC 7 cut(s) 487, 1054, 1126, 1129, 1354, 1540, 1687
BmcAI AGTACT 1 cut(s) 1362
Bme1390I CCNGG 3 cut(s) 324, 905, 1613
BmeT110I CYCGRG 1 cut(s) 1591
BmgT120I GGNCC 1 cut(s) 1136
BmiI GGNNCC 3 cut(s) 194, 304, 1598
BmrFI CCNGG 3 cut(s) 324, 905, 1613
BmtI GCTAGC 1 cut(s) 1685
BpiI GAAGAC 2 cut(s) 95, 1737
Bpu14I TTCGAA 1 cut(s) 1627
BpuEI CTTGAG 2 cut(s) 1183, 1417
BpuMI CCSGG 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 4 cut(s) 526, 904, 1611, 1710
BsaWI WCCGGW 2 cut(s) 195, 1342
BsaXI ACNNNNNCTCC 2 cut(s) 1771, 1801
Bsc4I CCNNNNNNNGG 2 cut(s) 832, 1716
Bse1I ACTGG 2 cut(s) 374, 408
Bse3DI GCAATG 4 cut(s) 613, 676, 935, 1551
BseAI TCCGGA 1 cut(s) 195
BseBI CCWGG 2 cut(s) 905, 1613
BseDI CCNNGG 4 cut(s) 526, 904, 1611, 1710
BseGI GGATG 4 cut(s) 352, 407, 745, 1443
BseLI CCNNNNNNNGG 2 cut(s) 832, 1716
BseMI GCAATG 4 cut(s) 613, 676, 935, 1551
BseMII CTCAG 3 cut(s) 936, 1049, 1689
BseNI ACTGG 2 cut(s) 374, 408
BseRI GAGGAG 3 cut(s) 61, 350, 1478
BseXI GCAGC 7 cut(s) 472, 1039, 1111, 1139, 1364, 1550, 1672
BsgI GTGCAG 2 cut(s) 522, 1038
BshFI GGCC 2 cut(s) 1137, 1666
BsiHKAI GWGCWC 2 cut(s) 765, 1654
BsiHKCI CYCGRG 1 cut(s) 1591
BsiSI CCGG 3 cut(s) 196, 323, 1343
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 2 cut(s) 832, 1716
BsmAI GTCTC 2 cut(s) 584, 949
BsmFI GGGAC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 2 cut(s) 1137, 1666
Bso31I GGTCTC 1 cut(s) 584
BsoBI CYCGRG 1 cut(s) 1591
Bsp119I TTCGAA 1 cut(s) 1627
Bsp1286I GDGCHC 2 cut(s) 765, 1654
Bsp13I TCCGGA 1 cut(s) 195
Bsp143I GATC 5 cut(s) 28, 388, 682, 931, 1409
Bsp19I CCATGG 1 cut(s) 1710
BspACI CCGC 2 cut(s) 576, 1817
BspANI GGCC 2 cut(s) 1137, 1666
BspCNI CTCAG 3 cut(s) 937, 1050, 1690
BspEI TCCGGA 1 cut(s) 195
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 3 cut(s) 194, 304, 1598
BspMAI CTGCAG 1 cut(s) 1129
BspOI GCTAGC 1 cut(s) 1685
BspPI GGATC 4 cut(s) 23, 677, 926, 1417
BspT104I TTCGAA 1 cut(s) 1627
BspTI CTTAAG 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 4 cut(s) 613, 676, 935, 1551
BsrI ACTGG 2 cut(s) 374, 408
BssECI CCNNGG 4 cut(s) 526, 904, 1611, 1710
BssMI GATC 5 cut(s) 28, 388, 682, 931, 1409
BssT1I CCWWGG 2 cut(s) 526, 1710
Bst2UI CCWGG 2 cut(s) 905, 1613
Bst4CI ACNGT 4 cut(s) 71, 302, 310, 865
Bst6I CTCTTC 3 cut(s) 633, 1531, 1670
BstAFI CTTAAG 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 1627
BstC8I GCNNGC 2 cut(s) 1683, 1817
BstDEI CTNAG 5 cut(s) 423, 945, 959, 1058, 1698
BstDSI CCRYGG 1 cut(s) 1710
BstENI CCTNNNNNAGG 1 cut(s) 830
BstF5I GGATG 4 cut(s) 352, 407, 745, 1443
BstH2I RGCGCY 1 cut(s) 1279
BstHHI GCGC 1 cut(s) 1278
BstKTI GATC 5 cut(s) 31, 391, 685, 934, 1412
BstMAI GTCTC 2 cut(s) 584, 949
BstMBI GATC 5 cut(s) 28, 388, 682, 931, 1409
BstMWI GCNNNNNNNGC 4 cut(s) 190, 946, 1273, 1821
BstNI CCWGG 2 cut(s) 905, 1613
BstNSI RCATGY 3 cut(s) 1013, 1775, 1828
BstSCI CCNGG 3 cut(s) 322, 903, 1611
BstSFI CTRYAG 1 cut(s) 1125
BstV1I GCAGC 7 cut(s) 472, 1039, 1111, 1139, 1364, 1550, 1672
BstV2I GAAGAC 2 cut(s) 95, 1737
BstX2I RGATCY 1 cut(s) 1409
BstXI CCANNNNNNTGG 1 cut(s) 1013
BstYI RGATCY 1 cut(s) 1409
BsuRI GGCC 2 cut(s) 1137, 1666
BtgI CCRYGG 1 cut(s) 1710
BtsCI GGATG 4 cut(s) 352, 407, 745, 1443
BtsI GCAGTG 1 cut(s) 1826
BtsIMutI CAGTG 5 cut(s) 306, 571, 870, 1055, 1826
Cac8I GCNNGC 2 cut(s) 1683, 1817
CciI TCATGA 1 cut(s) 112
CfoI GCGC 1 cut(s) 1278
Cfr13I GGNCC 1 cut(s) 1136
Csp6I GTAC 3 cut(s) 1361, 1707, 1769
CviQI GTAC 3 cut(s) 1361, 1707, 1769
DdeI CTNAG 5 cut(s) 423, 945, 959, 1058, 1698
DpnI GATC 5 cut(s) 30, 390, 684, 933, 1411
DpnII GATC 5 cut(s) 28, 388, 682, 931, 1409
DraIII CACNNNGTG 1 cut(s) 1061
Eam1104I CTCTTC 3 cut(s) 633, 1531, 1670
EarI CTCTTC 3 cut(s) 633, 1531, 1670
Ecl136II GAGCTC 1 cut(s) 763
Eco130I CCWWGG 2 cut(s) 526, 1710
Eco24I GRGCYC 1 cut(s) 765
Eco31I GGTCTC 1 cut(s) 584
Eco47III AGCGCT 1 cut(s) 1277
Eco53kI GAGCTC 1 cut(s) 763
Eco57I CTGAAG 2 cut(s) 278, 935
Eco88I CYCGRG 1 cut(s) 1591
EcoICRI GAGCTC 1 cut(s) 763
EcoNI CCTNNNNNAGG 1 cut(s) 830
EcoRI GAATTC 1 cut(s) 1441
EcoRII CCWGG 2 cut(s) 903, 1611
EcoT14I CCWWGG 2 cut(s) 526, 1710
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 2 cut(s) 526, 1710
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 339
FauI CCCGC 1 cut(s) 1824
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 7 cut(s) 486, 1053, 1125, 1128, 1353, 1539, 1686
FokI GGATG 4 cut(s) 359, 394, 752, 1450
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 7 cut(s) 486, 1053, 1125, 1128, 1353, 1539, 1686
FspBI CTAG 6 cut(s) 527, 785, 923, 1358, 1403, 1682
GlaI GCGC 1 cut(s) 1277
GluI GCNGC 7 cut(s) 486, 1053, 1125, 1128, 1353, 1539, 1686
HaeII RGCGCY 1 cut(s) 1279
HaeIII GGCC 2 cut(s) 1137, 1666
HapII CCGG 3 cut(s) 196, 323, 1343
HhaI GCGC 1 cut(s) 1278
Hin6I GCGC 1 cut(s) 1276
HinP1I GCGC 1 cut(s) 1276
HindIII AAGCTT 1 cut(s) 166
HpaII CCGG 3 cut(s) 196, 323, 1343
HphI GGTGA 3 cut(s) 363, 710, 1441
Hpy166II GTNNAC 2 cut(s) 748, 898
Hpy188I TCNGA 8 cut(s) 297, 381, 633, 687, 946, 954, 1570, 1699
Hpy188III TCNNGA 5 cut(s) 113, 196, 998, 1171, 1620
Hpy8I GTNNAC 2 cut(s) 748, 898
HpyAV CCTTC 9 cut(s) 42, 404, 730, 777, 826, 951, 1026, 1456, 1751
HpyCH4III ACNGT 4 cut(s) 71, 302, 310, 865
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 946, 1273, 1821
HpyF3I CTNAG 5 cut(s) 423, 945, 959, 1058, 1698
HspAI GCGC 1 cut(s) 1276
Kpn2I TCCGGA 1 cut(s) 195
Kzo9I GATC 5 cut(s) 28, 388, 682, 931, 1409
LmnI GCTCC 5 cut(s) 198, 760, 768, 1596, 1657
Lsp1109I GCAGC 7 cut(s) 472, 1039, 1111, 1139, 1364, 1550, 1672
MaeI CTAG 6 cut(s) 527, 785, 923, 1358, 1403, 1682
MaeIII GTNAC 1 cut(s) 1471
MalI GATC 5 cut(s) 30, 390, 684, 933, 1411
MboI GATC 5 cut(s) 28, 388, 682, 931, 1409
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 1 cut(s) 1409
MhlI GDGCHC 2 cut(s) 765, 1654
MluCI AATT 7 cut(s) 692, 798, 989, 1441, 1465, 1601, 1689
MlyI GAGTC 4 cut(s) 452, 484, 1100, 1583
MmeI TCCRAC 1 cut(s) 1030
MroI TCCGGA 1 cut(s) 195
MroXI GAANNNNTTC 3 cut(s) 136, 431, 1445
MseI TTAA 5 cut(s) 330, 881, 1313, 1380, 1740
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 3 cut(s) 196, 323, 1343
MspR9I CCNGG 3 cut(s) 324, 905, 1613
MunI CAATTG 1 cut(s) 798
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 2 cut(s) 905, 1613
MwoI GCNNNNNNNGC 4 cut(s) 190, 946, 1273, 1821
NciI CCSGG 1 cut(s) 324
NcoI CCATGG 1 cut(s) 1710
NdeII GATC 5 cut(s) 28, 388, 682, 931, 1409
NheI GCTAGC 1 cut(s) 1681
NlaIV GGNNCC 3 cut(s) 194, 304, 1598
NmuCI GTSAC 1 cut(s) 1471
NspI RCATGY 3 cut(s) 1013, 1775, 1828
NspV TTCGAA 1 cut(s) 1627
PagI TCATGA 1 cut(s) 112
PciI ACATGT 2 cut(s) 1009, 1771
PctI GAATGC 1 cut(s) 640
PdmI GAANNNNTTC 3 cut(s) 136, 431, 1445
PfeI GAWTC 6 cut(s) 137, 257, 281, 289, 916, 1167
PflFI GACNNNGTC 1 cut(s) 752
PflMI CCANNNNNTGG 1 cut(s) 1716
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 7 cut(s) 487, 1054, 1126, 1129, 1354, 1540, 1687
PleI GAGTC 4 cut(s) 451, 483, 1100, 1583
PpsI GAGTC 4 cut(s) 451, 483, 1100, 1583
PscI ACATGT 2 cut(s) 1009, 1771
Psp124BI GAGCTC 1 cut(s) 765
Psp6I CCWGG 2 cut(s) 903, 1611
PspGI CCWGG 2 cut(s) 903, 1611
PspN4I GGNNCC 3 cut(s) 194, 304, 1598
PspPI GGNCC 1 cut(s) 1136
PstI CTGCAG 1 cut(s) 1129
PsuI RGATCY 1 cut(s) 1409
PsyI GACNNNGTC 1 cut(s) 752
RsaI GTAC 3 cut(s) 1362, 1708, 1770
RsaNI GTAC 3 cut(s) 1361, 1707, 1769
SacI GAGCTC 1 cut(s) 765
SaqAI TTAA 5 cut(s) 330, 881, 1313, 1380, 1740
SatI GCNGC 7 cut(s) 486, 1053, 1125, 1128, 1353, 1539, 1686
Sau3AI GATC 5 cut(s) 28, 388, 682, 931, 1409
Sau96I GGNCC 1 cut(s) 1136
ScaI AGTACT 1 cut(s) 1362
SchI GAGTC 4 cut(s) 452, 484, 1100, 1583
ScrFI CCNGG 3 cut(s) 324, 905, 1613
SduI GDGCHC 2 cut(s) 765, 1654
SfcI CTRYAG 1 cut(s) 1125
SfuI TTCGAA 1 cut(s) 1627
SmlI CTYRAG 3 cut(s) 329, 1162, 1432
SmoI CTYRAG 3 cut(s) 329, 1162, 1432
Sse9I AATT 7 cut(s) 692, 798, 989, 1441, 1465, 1601, 1689
SsiI CCGC 2 cut(s) 576, 1817
SspMI CTAG 6 cut(s) 527, 785, 923, 1358, 1403, 1682
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 3 cut(s) 322, 903, 1611
StyI CCWWGG 2 cut(s) 526, 1710
TaaI ACNGT 4 cut(s) 71, 302, 310, 865
TaqI TCGA 7 cut(s) 279, 919, 1170, 1272, 1627, 1789, 1801
TasI AATT 7 cut(s) 692, 798, 989, 1441, 1465, 1601, 1689
TatI WGTACW 1 cut(s) 1360
TfiI GAWTC 6 cut(s) 137, 257, 281, 289, 916, 1167
Tru1I TTAA 5 cut(s) 330, 881, 1313, 1380, 1740
Tru9I TTAA 5 cut(s) 330, 881, 1313, 1380, 1740
TscAI CASTG 5 cut(s) 313, 571, 870, 1062, 1826
TseFI GTSAC 1 cut(s) 1471
TseI GCWGC 7 cut(s) 485, 1052, 1124, 1127, 1352, 1538, 1685
Tsp45I GTSAC 1 cut(s) 1471
TspRI CASTG 5 cut(s) 313, 571, 870, 1062, 1826
Tth111I GACNNNGTC 1 cut(s) 752
Van91I CCANNNNNTGG 1 cut(s) 1716
Vha464I CTTAAG 1 cut(s) 329
XagI CCTNNNNNAGG 1 cut(s) 830
XapI RAATTY 2 cut(s) 989, 1441
XceI RCATGY 3 cut(s) 1013, 1775, 1828
XmaJI CCTAGG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 747
XmnI GAANNNNTTC 3 cut(s) 136, 431, 1445
XspI CTAG 6 cut(s) 527, 785, 923, 1358, 1403, 1682
ZrmI AGTACT 1 cut(s) 1362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.