Rh5AG088100

protein At1g04910-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006470
Physical Location & Seq
Reverse (-)
7802034 .. 7806277
4244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG088100.1

Sequence Viewer

Length: 1350 bp
ATGGGAAAGCAAGGGAGCAAAGAATATGATCCTTCTAATATTGGGAGGAGAATGTCAGGGGGAGATTACAGTTTGAATTCCAAAATGTTGTGGCTTCATGGTCTGAAAAGTCATGACTTTCATGTTCTACGAAATGATTCCATGAAGTGTAGTACTTGTAAGGGAAGCTTTGTGGGGAAAAAGCATTTGTGGCTTCGGAAAGATGTGAAGTCAATCGTTTTTGTGTTTGTTTTGATGGGTTTCCTTATCCTGCTTGATACTTTTCTGGTGTCCTTTTTCGATTCTATGGTTCTTCAGAACAGTTCAACTTTAAGAAAATCTCTGGGGCTTAAGGAGGACAAAATGGATGCCTACATTATGAAAGAAAAATCACCAGTTCAGATGTATGATCGCCTACTAAAGTTGGCGTCTGCATCCCTTGCAAAGAAAGAGTTCAAGCAAGAGTCATCAACCTTATGGGAAGAACCAAATAGGAGGCAAGTTGCTGCATGGAAACCTTGTGCGGATAGAAAAGTTTCGAAAAGCCTAGGAAAATATAAGAAAAGTAATGGCTACATAATAGTCAGTGCAAATGGTGGTCTCAATCAACAACGAGTTGCTATTTGCAATGCTGTTGCTGTGGCATCTCTTCTAAATGCTACTCTTGTTCTTCCAAGATTTCTTTACAGCAATGTGTGGAATGATCCGAGTCAATTTGGTGATATTTACCAAGAAGAATATTTTATAGATGTAATGAAGGATGAAGTAAACATTGTCAAGGAACTCCCTTCTCATTTGGAATCACTAGACCTTGAAGCAATTGGTAGCCTTATTACTGATGCAGATCTTGTGAAGGAGGCAAAACCAACTGATTATGTTAGAACTGTGCTTCCTATTCTCTTGAAAAATGGAGTTGTTCACTTCCTGGGATATGGGAATCGACTAGGCTTCGATCCATTGCCTTCTGAGCTTCAGAGACTAAGATGCAAATGCAACTTCCATGCTTTGAAATTCGTGCCCGAAATCCAACGAGTTGGTTCTTTATTGGTTACAAGGATAAGAAAATATGATGCTGCACTGAGTATGTTGGACAAACAATTGCTTGGAAACTTCATGCACAGCATTCACTCAAAACAGCATGATGCTGCTGCAAGAGGCCCGTTCAAATATCTTGCTCTACACTTGAGATTCGAGATTGACATGGTAGCCTATTCCCTCTGTGACTTTGGAGGTGGAGAAAGTGAGAGAAATGAACTTCAAGCATACAGAGAAATCCATTTTCCTCTGCTCATCGAGCGCTTAAAGAACTCGAAGTATATTTTTCCTATATGGCTTTCTCAGTTCTTATTTTATCTAACTATGTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

449

Amino Acids

51.3

Weight (kDa)

9.23

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 185 - 423 1.1e-60 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 503
AclWI GGATC 3 cut(s) 23, 677, 926
AcsI RAATTY 2 cut(s) 76, 989
AcuI CTGAAG 2 cut(s) 278, 935
AcyI GRCGYC 1 cut(s) 407
AfaI GTAC 1 cut(s) 154
AfeI AGCGCT 1 cut(s) 1277
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 8 cut(s) 76, 306, 436, 794, 883, 988, 1144, 1238
AjnI CCWGG 1 cut(s) 903
AloI GAACNNNNNNTCC 2 cut(s) 853, 885
AluBI AGCT 2 cut(s) 168, 949
AluI AGCT 2 cut(s) 168, 949
Alw26I GTCTC 2 cut(s) 584, 949
AlwI GGATC 3 cut(s) 23, 677, 926
Aor51HI AGCGCT 1 cut(s) 1277
AoxI GGCC 1 cut(s) 1135
ApeKI GCWGC 4 cut(s) 485, 1052, 1124, 1127
ApoI RAATTY 2 cut(s) 76, 989
Asp700I GAANNNNTTC 3 cut(s) 136, 431, 514
AspA2I CCTAGG 1 cut(s) 526
AspLEI GCGC 1 cut(s) 1278
AspS9I GGNCC 1 cut(s) 1136
AsuHPI GGTGA 2 cut(s) 363, 710
AsuII TTCGAA 1 cut(s) 518
AvrII CCTAGG 1 cut(s) 526
BaeGI GKGCMC 1 cut(s) 999
BbvI GCAGC 4 cut(s) 472, 1039, 1111, 1114
BccI CCATC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 905
BcoDI GTCTC 2 cut(s) 584, 949
BfaI CTAG 3 cut(s) 527, 785, 923
BfoI RGCGCY 1 cut(s) 1279
BfrI CTTAAG 1 cut(s) 329
BglII AGATCT 1 cut(s) 823
BisI GCNGC 4 cut(s) 486, 1053, 1125, 1128
BlnI CCTAGG 1 cut(s) 526
BlsI GCNGC 4 cut(s) 487, 1054, 1126, 1129
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 905
BmgT120I GGNCC 1 cut(s) 1136
BmrFI CCNGG 1 cut(s) 905
BmsI GCATC 7 cut(s) 337, 422, 632, 808, 953, 1039, 1111
Bpu14I TTCGAA 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 1183
BsaBI GATNNNNATC 1 cut(s) 822
BsaHI GRCGYC 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 526, 904
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 3 cut(s) 613, 676, 935
Bse8I GATNNNNATC 1 cut(s) 822
BseBI CCWGG 1 cut(s) 905
BseDI CCNNGG 2 cut(s) 526, 904
BseGI GGATG 3 cut(s) 352, 413, 745
BseJI GATNNNNATC 1 cut(s) 822
BseMI GCAATG 3 cut(s) 613, 676, 935
BseMII CTCAG 3 cut(s) 936, 1049, 1331
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 999
BseXI GCAGC 4 cut(s) 472, 1039, 1111, 1114
BsgI GTGCAG 1 cut(s) 1038
BshFI GGCC 1 cut(s) 1137
BsmAI GTCTC 2 cut(s) 584, 949
BsmI GAATGC 1 cut(s) 1101
BsnI GGCC 1 cut(s) 1137
Bso31I GGTCTC 1 cut(s) 584
Bsp119I TTCGAA 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 999
Bsp143I GATC 5 cut(s) 28, 388, 682, 823, 931
BspACI CCGC 1 cut(s) 503
BspANI GGCC 1 cut(s) 1137
BspCNI CTCAG 3 cut(s) 937, 1050, 1330
BspHI TCATGA 1 cut(s) 112
BspPI GGATC 3 cut(s) 23, 677, 926
BspT104I TTCGAA 1 cut(s) 518
BspTI CTTAAG 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 3 cut(s) 613, 676, 935
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 526, 904
BssMI GATC 5 cut(s) 28, 388, 682, 823, 931
BssNI GRCGYC 1 cut(s) 407
BssT1I CCWWGG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 905
Bst4CI ACNGT 3 cut(s) 71, 302, 865
Bst6I CTCTTC 1 cut(s) 633
BstACI GRCGYC 1 cut(s) 407
BstAFI CTTAAG 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 518
BstDEI CTNAG 4 cut(s) 945, 959, 1058, 1317
BstF5I GGATG 3 cut(s) 352, 413, 745
BstH2I RGCGCY 1 cut(s) 1279
BstHHI GCGC 1 cut(s) 1278
BstKTI GATC 5 cut(s) 31, 391, 685, 826, 934
BstMAI GTCTC 2 cut(s) 584, 949
BstMBI GATC 5 cut(s) 28, 388, 682, 823, 931
BstMWI GCNNNNNNNGC 4 cut(s) 190, 419, 946, 1273
BstNI CCWGG 1 cut(s) 905
BstSCI CCNGG 1 cut(s) 903
BstSLI GKGCMC 1 cut(s) 999
BstV1I GCAGC 4 cut(s) 472, 1039, 1111, 1114
BstX2I RGATCY 1 cut(s) 823
BstXI CCANNNNNNTGG 1 cut(s) 1013
BstYI RGATCY 1 cut(s) 823
BsuRI GGCC 1 cut(s) 1137
BtsCI GGATG 3 cut(s) 352, 413, 745
BtsIMutI CAGTG 2 cut(s) 571, 1055
CciI TCATGA 1 cut(s) 112
CfoI GCGC 1 cut(s) 1278
Cfr13I GGNCC 1 cut(s) 1136
CseI GACGC 1 cut(s) 396
Csp6I GTAC 1 cut(s) 153
CviAII CATG 9 cut(s) 98, 113, 122, 142, 489, 980, 1093, 1118, 1180
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 4 cut(s) 945, 959, 1058, 1317
DpnI GATC 5 cut(s) 30, 390, 684, 825, 933
DpnII GATC 5 cut(s) 28, 388, 682, 823, 931
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco130I CCWWGG 1 cut(s) 526
Eco31I GGTCTC 1 cut(s) 584
Eco47III AGCGCT 1 cut(s) 1277
Eco57I CTGAAG 2 cut(s) 278, 935
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 903
EcoT14I CCWWGG 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 526
FaeI CATG 9 cut(s) 101, 116, 125, 145, 492, 983, 1096, 1121, 1183
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 9 cut(s) 97, 112, 121, 141, 488, 979, 1092, 1117, 1179
Fnu4HI GCNGC 4 cut(s) 486, 1053, 1125, 1128
FokI GGATG 3 cut(s) 359, 400, 752
Fsp4HI GCNGC 4 cut(s) 486, 1053, 1125, 1128
FspBI CTAG 3 cut(s) 527, 785, 923
GlaI GCGC 1 cut(s) 1277
GluI GCNGC 4 cut(s) 486, 1053, 1125, 1128
HaeII RGCGCY 1 cut(s) 1279
HaeIII GGCC 1 cut(s) 1137
HgaI GACGC 1 cut(s) 396
HhaI GCGC 1 cut(s) 1278
Hin1I GRCGYC 1 cut(s) 407
Hin1II CATG 9 cut(s) 101, 116, 125, 145, 492, 983, 1096, 1121, 1183
Hin6I GCGC 1 cut(s) 1276
HinP1I GCGC 1 cut(s) 1276
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 7 cut(s) 137, 281, 443, 688, 779, 916, 1167
HphI GGTGA 2 cut(s) 363, 710
Hpy166II GTNNAC 2 cut(s) 748, 898
Hpy188I TCNGA 7 cut(s) 105, 198, 297, 381, 687, 946, 954
Hpy188III TCNNGA 3 cut(s) 113, 880, 1171
Hpy8I GTNNAC 2 cut(s) 748, 898
HpyAV CCTTC 5 cut(s) 42, 730, 777, 826, 951
HpyCH4III ACNGT 3 cut(s) 71, 302, 865
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 419, 946, 1273
HpyF3I CTNAG 4 cut(s) 945, 959, 1058, 1317
Hsp92I GRCGYC 1 cut(s) 407
Hsp92II CATG 9 cut(s) 101, 116, 125, 145, 492, 983, 1096, 1121, 1183
HspAI GCGC 1 cut(s) 1276
Kzo9I GATC 5 cut(s) 28, 388, 682, 823, 931
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 7 cut(s) 42, 251, 263, 308, 387, 890, 917
Lsp1109I GCAGC 4 cut(s) 472, 1039, 1111, 1114
LweI GCATC 7 cut(s) 337, 422, 632, 808, 953, 1039, 1111
MaeI CTAG 3 cut(s) 527, 785, 923
MaeIII GTNAC 2 cut(s) 1027, 1199
MalI GATC 5 cut(s) 30, 390, 684, 825, 933
MboI GATC 5 cut(s) 28, 388, 682, 823, 931
MboII GAAGA 5 cut(s) 284, 473, 620, 641, 725
MfeI CAATTG 2 cut(s) 798, 1076
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 1 cut(s) 999
MluCI AATT 6 cut(s) 76, 692, 798, 989, 1076, 1345
MlyI GAGTC 2 cut(s) 452, 697
MmeI TCCRAC 2 cut(s) 1030, 1047
MnlI CCTC 8 cut(s) 39, 328, 468, 829, 1127, 1202, 1205, 1272
MroXI GAANNNNTTC 3 cut(s) 136, 431, 514
MseI TTAA 4 cut(s) 311, 330, 1280, 1348
MspCI CTTAAG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 905
MunI CAATTG 2 cut(s) 798, 1076
Mva1269I GAATGC 1 cut(s) 1101
MvaI CCWGG 1 cut(s) 905
MwoI GCNNNNNNNGC 4 cut(s) 190, 419, 946, 1273
NdeII GATC 5 cut(s) 28, 388, 682, 823, 931
NlaIII CATG 9 cut(s) 101, 116, 125, 145, 492, 983, 1096, 1121, 1183
NmuCI GTSAC 1 cut(s) 1199
NspV TTCGAA 1 cut(s) 518
PagI TCATGA 1 cut(s) 112
PctI GAATGC 1 cut(s) 1101
PdmI GAANNNNTTC 3 cut(s) 136, 431, 514
PfeI GAWTC 5 cut(s) 137, 281, 779, 916, 1167
PkrI GCNGC 4 cut(s) 487, 1054, 1126, 1129
PleI GAGTC 2 cut(s) 451, 696
PpsI GAGTC 2 cut(s) 451, 696
Psp6I CCWGG 1 cut(s) 903
PspGI CCWGG 1 cut(s) 903
PspPI GGNCC 1 cut(s) 1136
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 4 cut(s) 311, 330, 1280, 1348
SatI GCNGC 4 cut(s) 486, 1053, 1125, 1128
Sau3AI GATC 5 cut(s) 28, 388, 682, 823, 931
Sau96I GGNCC 1 cut(s) 1136
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 2 cut(s) 452, 697
ScrFI CCNGG 1 cut(s) 905
SduI GDGCHC 1 cut(s) 999
SetI ASST 6 cut(s) 170, 455, 499, 792, 951, 1213
SfaNI GCATC 7 cut(s) 337, 422, 632, 808, 953, 1039, 1111
SfuI TTCGAA 1 cut(s) 518
SmlI CTYRAG 2 cut(s) 329, 1162
SmoI CTYRAG 2 cut(s) 329, 1162
Sse9I AATT 6 cut(s) 76, 692, 798, 989, 1076, 1345
SsiI CCGC 1 cut(s) 503
SspI AATATT 2 cut(s) 40, 719
SspMI CTAG 3 cut(s) 527, 785, 923
StyD4I CCNGG 1 cut(s) 903
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 3 cut(s) 71, 302, 865
TaqI TCGA 7 cut(s) 279, 518, 919, 930, 1170, 1272, 1289
TasI AATT 6 cut(s) 76, 692, 798, 989, 1076, 1345
TatI WGTACW 1 cut(s) 152
TfiI GAWTC 5 cut(s) 137, 281, 779, 916, 1167
Tru1I TTAA 4 cut(s) 311, 330, 1280, 1348
Tru9I TTAA 4 cut(s) 311, 330, 1280, 1348
TscAI CASTG 2 cut(s) 571, 1062
TseFI GTSAC 1 cut(s) 1199
TseI GCWGC 4 cut(s) 485, 1052, 1124, 1127
Tsp45I GTSAC 1 cut(s) 1199
TspDTI ATGAA 8 cut(s) 86, 110, 158, 374, 749, 756, 1081, 1245
TspRI CASTG 2 cut(s) 571, 1062
Vha464I CTTAAG 1 cut(s) 329
XapI RAATTY 2 cut(s) 76, 989
XmaJI CCTAGG 1 cut(s) 526
XmnI GAANNNNTTC 3 cut(s) 136, 431, 514
XspI CTAG 3 cut(s) 527, 785, 923
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.