Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035476.1

Orthogroup ID

OG0006470

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 452

Gene Structure 452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035476.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ttagcagcactagacttcattgcctgtgcaactgccgatgtgtttgctatgactgactccgggagccaactatcctccctggtatctggatttcgaacctattatggtggcggccatgctcctactctgcggcctaacaagaagaggctagcagcaattttgtctgagaatagtaccataggctggaatatttttgaagacagagttaaaaagatgatcgaggaaggtcaaagggtacatgtaaggaggtttggtcgaagcatatatcgacagccaagatgcccagagtgcatgtgtaaatcctacctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

103

Amino Acids

11.56

Weight (kDa)

9.46

Isoelectric Point (pI)

75.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29200 AT1G29200 AT1G29200 AT1G29200
fragaria_vesca	FvH4_3g07520 FvH4_3g07520 FvH4_3g07520 FvH4_5g19990
malus_domestica	MD05G1298200.v1.1 MD10G1277700.v1.1
prunus_persica	Prupe.4G064100_v2.0.a1 Prupe.4G064100_v2.0.a1
pyrus_communis	pycom05g27610 pycom10g23170
rosa_chinensis	RchiOBHm_Chr5g0011251
rosa_laevigata	RLG00000031822 RLG00000033166
rosa_multiflora	Rmu_sc0035476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065150
rosa_rugosa	Rorug04G0456200 Rorug04G0456300
rosa_samantha	Rh5AG088100 Rh5BG082900 Rh5CG095900 Rh5DG082800
rosa_wichuraiana	Rw5G007630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	183
AciI	CCGC	2 cut(s)	111, 130
AcoI	YGGCCR	1 cut(s)	112
AfaI	GTAC	2 cut(s)	175, 237
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	78
AoxI	GGCC	2 cut(s)	112, 131
ApeKI	GCWGC	2 cut(s)	5, 152
AsuC2I	CCSGG	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	94
AsuNHI	GCTAGC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	17, 164
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	2 cut(s)	11, 149
BisI	GCNGC	4 cut(s)	6, 112, 131, 153
BlsI	GCNGC	4 cut(s)	7, 113, 132, 154
Bme1390I	CCNGG	2 cut(s)	61, 80
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	61, 80
BmsI	GCATC	1 cut(s)	269
BmtI	GCTAGC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	17, 164
BshFI	GGCC	2 cut(s)	114, 133
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	183
BsnI	GGCC	2 cut(s)	114, 133
Bsp119I	TTCGAA	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	111, 130
BspANI	GGCC	2 cut(s)	114, 133
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	65
BspOI	GCTAGC	1 cut(s)	152
BspT104I	TTCGAA	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	2 cut(s)	242, 295
BstSCI	CCNGG	2 cut(s)	59, 78
BstV1I	GCAGC	2 cut(s)	17, 164
BstV2I	GAAGAC	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	114, 133
Cac8I	GCNNGC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	174, 236
CviAII	CATG	3 cut(s)	116, 239, 292
CviJI	RGCY	6 cut(s)	66, 114, 133, 148, 183, 274
CviKI_1	RGCY	6 cut(s)	66, 114, 133, 148, 183, 274
CviQI	GTAC	2 cut(s)	174, 236
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	3 cut(s)	119, 242, 295
FaiI	YATR	8 cut(s)	50, 105, 117, 179, 240, 263, 265, 293
FatI	CATG	3 cut(s)	115, 238, 291
Fnu4HI	GCNGC	4 cut(s)	6, 112, 131, 153
Fsp4HI	GCNGC	4 cut(s)	6, 112, 131, 153
FspBI	CTAG	2 cut(s)	11, 149
GluI	GCNGC	4 cut(s)	6, 112, 131, 153
HaeIII	GGCC	2 cut(s)	114, 133
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	3 cut(s)	119, 242, 295
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	29, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	119, 242, 295
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	63, 124
LpnPI	CCDG	7 cut(s)	37, 65, 72, 73, 92, 169, 297
Lsp1109I	GCAGC	2 cut(s)	17, 164
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	2 cut(s)	11, 149
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	2 cut(s)	154, 209
MluCI	AATT	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	85, 138, 214, 240
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	61, 80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	1 cut(s)	216
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	3 cut(s)	119, 242, 295
NlaIV	GGNNCC	1 cut(s)	65
NspI	RCATGY	2 cut(s)	242, 295
NspV	TTCGAA	1 cut(s)	94
PciI	ACATGT	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	183
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	4 cut(s)	7, 113, 132, 154
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PscI	ACATGT	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	65
RsaI	GTAC	2 cut(s)	175, 237
RsaNI	GTAC	2 cut(s)	174, 236
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	6, 112, 131, 153
Sau3AI	GATC	1 cut(s)	216
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	61, 80
SetI	ASST	4 cut(s)	101, 229, 251, 309
SfaNI	GCATC	1 cut(s)	269
SfuI	TTCGAA	1 cut(s)	94
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	2 cut(s)	111, 130
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	2 cut(s)	11, 149
StyD4I	CCNGG	2 cut(s)	59, 78
TaqI	TCGA	4 cut(s)	94, 219, 256, 268
TasI	AATT	1 cut(s)	156
TauI	GCSGC	2 cut(s)	114, 133
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	2 cut(s)	5, 152
TspDTI	ATGAA	1 cut(s)	7
Van91I	CCANNNNNTGG	1 cut(s)	183
XceI	RCATGY	2 cut(s)	242, 295
XspI	CTAG	2 cut(s)	11, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.