FvH4_5g19990

protein At1g04910-like isoform X1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
11799961 .. 11802528
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19990.t1

Sequence Viewer

Length: 1650 bp
ATGGGAAAGAAAGGGAGTAAGGAATATGATCCTTCTAATATTGGGAGGAGAATGTCAGGGGGAGATTACAGTTTGAATTCTAAAATGTTGTGGCTTCATGATGTGAAGTCAGTCGTTTTTGTGCTTGTTTTGATGAGTTTCCTTATCCTGCTTGATTCTTTTCTGGTGTCCTTTTTCGATTCCATGATCCTTCAGAACAGTTCCATTGTAAGAAAATCTCCGCGACTAAAGGAGGAGCAAAGGGATGCCTACATTATGAAAGAAAAATCACCTGTTCAGATGTACGATCGCCTTCTAATGGCATCCGTATCCCTTGTTAAGAAAGAGATCAAGCAAGAATCATCAACCTTATGGGAAGAACCAAATAGGAGGCAGGTTGCTGCATGGAAACCTTGTGCGGATAGAAAAATTTCGAAAAGCCTAGGAAAATATAAGGAAAGTAATGGCTATATACTACTCAGTGCAAATGGCGGTCTCAATCAACAACAAGTTGCTATTTGCAATGCTGTTGCTGTGGCATCTCTTCTGAATGCTACTCATGTTATTCCAAGATTTCTTTACAGCAATGTGTGGATGATCCGAGGTATGATCATTATCTCATCAACTTTTAACTCTGTTGATGACCTCATTTTGGTGGATGAAGTAAACATTGTCAAGGAACTCCCTTCTCATTTGGCATCACTAAACCTTGAAGCAATTGGTAGCCTAATTACTGATGCAGATCTAGTGAAGGAGGCAAAACCAACTGAGTATGTTAGAACTGTGCTTCCTATTCTCTTAAAAAATGGAGTTGTTCACTTCCTGGGATATGGGAATCGACTAGGCTTTGATCCATTGCCTTCTGAGCTTCAGAGACTAAGATGCAAATGCAACTTCCATGCTTTGAAATTCGTGCCTGAAATCCAACGAGTTGGTTCTTTGTTGGTTAGAAGGATAAGAAAATATGATGCTGCACCGAGAATGTTGGACGAACAATTGCTTGGAAACTTCATGCACAGCATTCACTCAAAACAGCTTGATGCTGCAGCAAGAGGCTCGTTCAAATATCTTGCTCTACACTTGAGATTCGAGATTGACATGGTAGCCTACTCGCTCTGTGACTTTGGAGGTGGAGAAAGTGAGAGAAATGAACTTCAAGCATACAGAGAAATCCATTTTCCTCTGCTCATCGAGCGCTTGAAGAACTCAAAGTCTGTTTCTCAAAGTGAATTGAGAAAGGTGGGGAAATGTCCATTGACACCGATGAATTCCTTCACCAACCTCTATCCTAATTTGCTCACAAAGGAAACTCTCCTCACACCAAGAGAACTTGCACCTTTTCAAAAGTTCTCTTCCAAGTTAGCAGCACTAGACTTCATTGCCTGTGCAACTTCTGATGTGTTCGCTATGACCGACTCCGGGAGCCAACTATCCTCCTTAGTATCTGGATTTCGAACCTATTATGGTGGTGGCAGTGCTCCTACTCTACGGCCTAACAAGAAGAGGCTAGCAGCAATTTTGTCCGAGAATAGTACCATAGGTTGGAACAGTTTTGAAGACAGAGTTAAGAAGATGATTGAGGAAGGTCAAAGGGTACATGTTAGGAGGTTTGGTCGAAGCATTTATCGACAGCCAAGATGCCCACAGTGCTTGTGTAAATCCTACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

550

Amino Acids

62.05

Weight (kDa)

9.49

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 150 - 416 1.2e-48 GDP-fucose protein O-fucosyltransferase
O-FucT PF10250 415 - 481 1.6e-12 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 1521
AccII CGCG 1 cut(s) 223
AciI CCGC 3 cut(s) 221, 398, 471
AclWI GGATC 4 cut(s) 23, 181, 571, 824
AcsI RAATTY 4 cut(s) 76, 408, 887, 1246
AcuI CTGAAG 2 cut(s) 176, 833
AfaI GTAC 3 cut(s) 284, 1513, 1575
AfeI AGCGCT 1 cut(s) 1175
AfiI CCNNNNNNNGG 4 cut(s) 298, 631, 1398, 1521
AflIII ACRYGT 1 cut(s) 1576
AgsI TTSAA 8 cut(s) 76, 692, 886, 1042, 1136, 1180, 1322, 1535
AjnI CCWGG 1 cut(s) 801
AjuI GAANNNNNNNTTGG 2 cut(s) 963, 995
AloI GAACNNNNNNTCC 2 cut(s) 751, 783
AluBI AGCT 2 cut(s) 847, 1015
AluI AGCT 2 cut(s) 847, 1015
Alw21I GWGCWC 1 cut(s) 1459
Alw26I GTCTC 2 cut(s) 479, 847
AlwI GGATC 4 cut(s) 23, 181, 571, 824
Aor51HI AGCGCT 1 cut(s) 1175
AoxI GGCC 1 cut(s) 1469
ApeKI GCWGC 6 cut(s) 380, 950, 1022, 1025, 1343, 1490
ApoI RAATTY 4 cut(s) 76, 408, 887, 1246
Asp700I GAANNNNTTC 2 cut(s) 409, 1250
AspA2I CCTAGG 1 cut(s) 421
AspLEI GCGC 1 cut(s) 1176
AsuC2I CCSGG 1 cut(s) 1399
AsuHPI GGTGA 2 cut(s) 261, 1246
AsuII TTCGAA 2 cut(s) 413, 1432
AsuNHI GCTAGC 1 cut(s) 1486
AvrII CCTAGG 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 1542
Bbv12I GWGCWC 1 cut(s) 1459
BbvI GCAGC 6 cut(s) 367, 937, 1009, 1037, 1355, 1502
BceAI ACGGC 1 cut(s) 1484
BcgI CGANNNNNNTGC 2 cut(s) 1017, 1051
BciT130I CCWGG 1 cut(s) 803
BciVI GTATCC 1 cut(s) 319
BclI TGATCA 1 cut(s) 588
BcnI CCSGG 1 cut(s) 1399
BcoDI GTCTC 2 cut(s) 479, 847
BfaI CTAG 5 cut(s) 422, 725, 821, 1349, 1487
BfmI CTRYAG 1 cut(s) 1023
BfoI RGCGCY 1 cut(s) 1177
BfuAI ACCTGC 1 cut(s) 364
BfuI GTATCC 1 cut(s) 319
BglII AGATCT 1 cut(s) 721
BisI GCNGC 6 cut(s) 381, 951, 1023, 1026, 1344, 1491
BlnI CCTAGG 1 cut(s) 421
BlsI GCNGC 6 cut(s) 382, 952, 1024, 1027, 1345, 1492
Bme1390I CCNGG 2 cut(s) 803, 1399
BmiI GGNNCC 1 cut(s) 1403
BmrFI CCNGG 2 cut(s) 803, 1399
BmsI GCATC 9 cut(s) 235, 311, 527, 686, 706, 851, 937, 1009, 1607
BmtI GCTAGC 1 cut(s) 1490
BpiI GAAGAC 1 cut(s) 1542
Bpu14I TTCGAA 2 cut(s) 413, 1432
BpuEI CTTGAG 1 cut(s) 1081
BpuMI CCSGG 1 cut(s) 1399
BsaBI GATNNNNATC 2 cut(s) 593, 720
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 3 cut(s) 421, 580, 802
BsaXI ACNNNNNCTCC 2 cut(s) 1576, 1606
Bsc4I CCNNNNNNNGG 4 cut(s) 298, 631, 1398, 1521
Bse3DI GCAATG 4 cut(s) 508, 571, 833, 1356
Bse8I GATNNNNATC 2 cut(s) 593, 720
BseBI CCWGG 1 cut(s) 803
BseDI CCNNGG 3 cut(s) 421, 580, 802
BseGI GGATG 4 cut(s) 250, 302, 579, 643
BseJI GATNNNNATC 2 cut(s) 593, 720
BseLI CCNNNNNNNGG 4 cut(s) 298, 631, 1398, 1521
BseMI GCAATG 4 cut(s) 508, 571, 833, 1356
BseMII CTCAG 3 cut(s) 472, 738, 834
BseRI GAGGAG 3 cut(s) 61, 248, 1283
BseXI GCAGC 6 cut(s) 367, 937, 1009, 1037, 1355, 1502
BsgI GTGCAG 1 cut(s) 936
Bsh1236I CGCG 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 1471
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 1459
BsiSI CCGG 1 cut(s) 1398
BslI CCNNNNNNNGG 4 cut(s) 298, 631, 1398, 1521
BsmAI GTCTC 2 cut(s) 479, 847
BsmI GAATGC 2 cut(s) 535, 999
BsnI GGCC 1 cut(s) 1471
Bso31I GGTCTC 1 cut(s) 479
Bsp119I TTCGAA 2 cut(s) 413, 1432
Bsp1286I GDGCHC 1 cut(s) 1459
Bsp143I GATC 8 cut(s) 28, 186, 286, 327, 576, 588, 721, 829
BspACI CCGC 3 cut(s) 221, 398, 471
BspANI GGCC 1 cut(s) 1471
BspCNI CTCAG 3 cut(s) 471, 739, 835
BspFNI CGCG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 1403
BspMAI CTGCAG 1 cut(s) 1027
BspMI ACCTGC 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 1490
BspPI GGATC 4 cut(s) 23, 181, 571, 824
BspT104I TTCGAA 2 cut(s) 413, 1432
BspTNI GGTCTC 1 cut(s) 479
BsrDI GCAATG 4 cut(s) 508, 571, 833, 1356
BssECI CCNNGG 3 cut(s) 421, 580, 802
BssMI GATC 8 cut(s) 28, 186, 286, 327, 576, 588, 721, 829
BssT1I CCWWGG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 803
Bst4CI ACNGT 5 cut(s) 71, 200, 763, 1529, 1626
Bst6I CTCTTC 3 cut(s) 528, 1336, 1475
BstBI TTCGAA 2 cut(s) 413, 1432
BstC8I GCNNGC 1 cut(s) 1488
BstDEI CTNAG 5 cut(s) 458, 747, 843, 857, 1417
BstF5I GGATG 4 cut(s) 250, 302, 579, 643
BstFNI CGCG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 1177
BstHHI GCGC 1 cut(s) 1176
BstKTI GATC 8 cut(s) 31, 189, 289, 330, 579, 591, 724, 832
BstMAI GTCTC 2 cut(s) 479, 847
BstMBI GATC 8 cut(s) 28, 186, 286, 327, 576, 588, 721, 829
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 3 cut(s) 844, 1171, 1626
BstNI CCWGG 1 cut(s) 803
BstNSI RCATGY 1 cut(s) 1580
BstSCI CCNGG 2 cut(s) 801, 1397
BstSFI CTRYAG 1 cut(s) 1023
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 6 cut(s) 367, 937, 1009, 1037, 1355, 1502
BstV2I GAAGAC 1 cut(s) 1542
BstX2I RGATCY 1 cut(s) 721
BstXI CCANNNNNNTGG 1 cut(s) 911
BstYI RGATCY 1 cut(s) 721
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 1 cut(s) 1471
BtsCI GGATG 4 cut(s) 250, 302, 579, 643
BtsI GCAGTG 1 cut(s) 1459
BtsIMutI CAGTG 3 cut(s) 466, 1459, 1631
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 1488
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 1176
Csp6I GTAC 3 cut(s) 283, 1512, 1574
CspCI CAANNNNNGTGG 2 cut(s) 1611, 1646
CviAII CATG 8 cut(s) 98, 184, 384, 539, 878, 991, 1078, 1577
CviQI GTAC 3 cut(s) 283, 1512, 1574
DdeI CTNAG 5 cut(s) 458, 747, 843, 857, 1417
DpnI GATC 8 cut(s) 30, 188, 288, 329, 578, 590, 723, 831
DpnII GATC 8 cut(s) 28, 186, 286, 327, 576, 588, 721, 829
Eam1104I CTCTTC 3 cut(s) 528, 1336, 1475
EarI CTCTTC 3 cut(s) 528, 1336, 1475
Eco130I CCWWGG 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 479
Eco47III AGCGCT 1 cut(s) 1175
Eco57I CTGAAG 2 cut(s) 176, 833
EcoRI GAATTC 2 cut(s) 76, 1246
EcoRII CCWGG 1 cut(s) 801
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 8 cut(s) 101, 187, 387, 542, 881, 994, 1081, 1580
FatI CATG 8 cut(s) 97, 183, 383, 538, 877, 990, 1077, 1576
FbaI TGATCA 1 cut(s) 588
Fnu4HI GCNGC 6 cut(s) 381, 951, 1023, 1026, 1344, 1491
FokI GGATG 4 cut(s) 257, 289, 586, 650
Fsp4HI GCNGC 6 cut(s) 381, 951, 1023, 1026, 1344, 1491
FspBI CTAG 5 cut(s) 422, 725, 821, 1349, 1487
GlaI GCGC 1 cut(s) 1175
GluI GCNGC 6 cut(s) 381, 951, 1023, 1026, 1344, 1491
HaeII RGCGCY 1 cut(s) 1177
HaeIII GGCC 1 cut(s) 1471
HapII CCGG 1 cut(s) 1398
HhaI GCGC 1 cut(s) 1176
Hin1II CATG 8 cut(s) 101, 187, 387, 542, 881, 994, 1081, 1580
Hin6I GCGC 1 cut(s) 1174
HinP1I GCGC 1 cut(s) 1174
HinfI GANTC 6 cut(s) 155, 179, 338, 814, 1065, 1394
HpaII CCGG 1 cut(s) 1398
HphI GGTGA 2 cut(s) 261, 1246
Hpy166II GTNNAC 2 cut(s) 646, 796
Hpy188I TCNGA 8 cut(s) 195, 279, 528, 581, 844, 852, 1375, 1504
Hpy188III TCNNGA 3 cut(s) 98, 1069, 1425
Hpy8I GTNNAC 2 cut(s) 646, 796
HpyAV CCTTC 9 cut(s) 42, 200, 302, 675, 724, 849, 924, 1261, 1556
HpyCH4III ACNGT 5 cut(s) 71, 200, 763, 1529, 1626
HpyF10VI GCNNNNNNNGC 3 cut(s) 844, 1171, 1626
HpyF3I CTNAG 5 cut(s) 458, 747, 843, 857, 1417
Hsp92II CATG 8 cut(s) 101, 187, 387, 542, 881, 994, 1081, 1580
HspAI GCGC 1 cut(s) 1174
Ksp22I TGATCA 1 cut(s) 588
Kzo9I GATC 8 cut(s) 28, 186, 286, 327, 576, 588, 721, 829
LmnI GCTCC 3 cut(s) 235, 1401, 1462
Lsp1109I GCAGC 6 cut(s) 367, 937, 1009, 1037, 1355, 1502
LweI GCATC 9 cut(s) 235, 311, 527, 686, 706, 851, 937, 1009, 1607
MaeI CTAG 5 cut(s) 422, 725, 821, 1349, 1487
MaeIII GTNAC 1 cut(s) 1097
MalI GATC 8 cut(s) 30, 188, 288, 329, 578, 590, 723, 831
MboI GATC 8 cut(s) 28, 186, 286, 327, 576, 588, 721, 829
MboII GAAGA 7 cut(s) 368, 515, 1192, 1323, 1492, 1547, 1561
MfeI CAATTG 2 cut(s) 696, 974
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 1 cut(s) 1459
MlyI GAGTC 1 cut(s) 1388
MmeI TCCRAC 3 cut(s) 928, 945, 1502
MroXI GAANNNNTTC 2 cut(s) 409, 1250
MseI TTAA 4 cut(s) 318, 609, 779, 1545
MslI CAYNNNNRTG 1 cut(s) 632
MspI CCGG 1 cut(s) 1398
MspR9I CCNGG 2 cut(s) 803, 1399
MunI CAATTG 2 cut(s) 696, 974
Mva1269I GAATGC 2 cut(s) 535, 999
MvaI CCWGG 1 cut(s) 803
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 3 cut(s) 844, 1171, 1626
NciI CCSGG 1 cut(s) 1399
NdeII GATC 8 cut(s) 28, 186, 286, 327, 576, 588, 721, 829
NheI GCTAGC 1 cut(s) 1486
NlaIII CATG 8 cut(s) 101, 187, 387, 542, 881, 994, 1081, 1580
NlaIV GGNNCC 1 cut(s) 1403
NmuCI GTSAC 1 cut(s) 1097
NspI RCATGY 1 cut(s) 1580
NspV TTCGAA 2 cut(s) 413, 1432
PagI TCATGA 1 cut(s) 97
PciI ACATGT 1 cut(s) 1576
PcsI WCGNNNNNNNCGW 1 cut(s) 1389
PctI GAATGC 2 cut(s) 535, 999
PdmI GAANNNNTTC 2 cut(s) 409, 1250
PfeI GAWTC 5 cut(s) 155, 179, 338, 814, 1065
PflMI CCANNNNNTGG 1 cut(s) 1521
PfoI TCCNGGA 1 cut(s) 1397
PkrI GCNGC 6 cut(s) 382, 952, 1024, 1027, 1345, 1492
Ple19I CGATCG 1 cut(s) 289
PleI GAGTC 1 cut(s) 1388
PpsI GAGTC 1 cut(s) 1388
PscI ACATGT 1 cut(s) 1576
Psp6I CCWGG 1 cut(s) 801
PspGI CCWGG 1 cut(s) 801
PspN4I GGNNCC 1 cut(s) 1403
PstI CTGCAG 1 cut(s) 1027
PsuI RGATCY 1 cut(s) 721
PvuI CGATCG 1 cut(s) 289
RsaI GTAC 3 cut(s) 284, 1513, 1575
RsaNI GTAC 3 cut(s) 283, 1512, 1574
RseI CAYNNNNRTG 1 cut(s) 632
SaqAI TTAA 4 cut(s) 318, 609, 779, 1545
SatI GCNGC 6 cut(s) 381, 951, 1023, 1026, 1344, 1491
Sau3AI GATC 8 cut(s) 28, 186, 286, 327, 576, 588, 721, 829
SchI GAGTC 1 cut(s) 1388
ScrFI CCNGG 2 cut(s) 803, 1399
SduI GDGCHC 1 cut(s) 1459
SfaNI GCATC 9 cut(s) 235, 311, 527, 686, 706, 851, 937, 1009, 1607
SfcI CTRYAG 1 cut(s) 1023
SfuI TTCGAA 2 cut(s) 413, 1432
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 1060
SmoI CTYRAG 1 cut(s) 1060
SsiI CCGC 3 cut(s) 221, 398, 471
SspI AATATT 1 cut(s) 40
SspMI CTAG 5 cut(s) 422, 725, 821, 1349, 1487
StyD4I CCNGG 2 cut(s) 801, 1397
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 5 cut(s) 71, 200, 763, 1529, 1626
TaqI TCGA 8 cut(s) 177, 413, 817, 1068, 1170, 1432, 1594, 1606
TaqII GACCGA 1 cut(s) 1406
TfiI GAWTC 5 cut(s) 155, 179, 338, 814, 1065
Tru1I TTAA 4 cut(s) 318, 609, 779, 1545
Tru9I TTAA 4 cut(s) 318, 609, 779, 1545
TscAI CASTG 3 cut(s) 466, 1459, 1631
TseFI GTSAC 1 cut(s) 1097
TseI GCWGC 6 cut(s) 380, 950, 1022, 1025, 1343, 1490
Tsp45I GTSAC 1 cut(s) 1097
TspDTI ATGAA 7 cut(s) 86, 272, 654, 979, 1143, 1259, 1345
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 3 cut(s) 466, 1459, 1631
Van91I CCANNNNNTGG 1 cut(s) 1521
XapI RAATTY 4 cut(s) 76, 408, 887, 1246
XceI RCATGY 1 cut(s) 1580
XmaJI CCTAGG 1 cut(s) 421
XmnI GAANNNNTTC 2 cut(s) 409, 1250
XspI CTAG 5 cut(s) 422, 725, 821, 1349, 1487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.