Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006470

Physical Location & Seq

Genomic Coordinates Reverse (-)

23981875 .. 23984239

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATAGATGTTGCATCCGCGTTGGAATACCTTCATCATGGTTATACAATACCAATTCTCCATTGTGATTTGAAGCCAAGCAATATACTACTAGACAATGATATGGTTGCACATGTTGCTGATTTTGGCATTGCAAAACTCTTGGGTGGACGGGATTCTGTGACCGCAACCATGACGCTAGCTACAGTTGGGTATATGGCTCCAGAGACTAGGATGCAAATGGAACTTCCATGCTTTGAATTTGTGCCCGAAATCCAACGAGTTGGTTCTTTGTTGGTTAGAAGGATAAGAAAATATGATGCTGCACTGAGTATGTTGGACAAACAATTGCTTGGAAACGTCATGCACAGCATTCACTCAAAACAGCATGATGCTGCAGCAAGAGGCCCGTTCAAATATCTTGCTTTGCACTTGAGATTCGAGATTGACATGGTGGCCTACTCACTCTGTGACTCTGGAGGTGGAGAAAGTGAGAGAAATGAACTTCAAGCATATAGAGAAATCCATTTTCCTCTGCAGCTCTGCTCATCGAGCGCTTATAGAACTCTAAGTCTGTTTCTCAAACTGGATCTCAGATATATCTCCGGGATGAATTCCTTCACCAACCTCTATCCTAATTTGGTCACAAAGGGAACTCTCCTCACACCAAGAGAACTTGCACCTTTTCAAAACTTCTCTTCCAAGGTAGCAGCACTAGACTTCATTGCCTGTGCAACTGCTGATATGCTTGCTATGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

247

Amino Acids

27.4

Weight (kDa)

6.29

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 74	4.5e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 70	5e-15	Protein kinase domain
O-FucT	PF10250	48 - 243	6.1e-21	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29200 AT1G29200 AT1G29200 AT1G29200
fragaria_vesca	FvH4_3g07520 FvH4_3g07520 FvH4_3g07520 FvH4_5g19990
malus_domestica	MD05G1298200.v1.1 MD10G1277700.v1.1
prunus_persica	Prupe.4G064100_v2.0.a1 Prupe.4G064100_v2.0.a1
pyrus_communis	pycom05g27610 pycom10g23170
rosa_chinensis	RchiOBHm_Chr5g0011251
rosa_laevigata	RLG00000031822 RLG00000033166
rosa_multiflora	Rmu_sc0035476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065150
rosa_rugosa	Rorug04G0456200 Rorug04G0456300
rosa_samantha	Rh5AG088100 Rh5BG082900 Rh5CG095900 Rh5DG082800
rosa_wichuraiana	Rw5G007630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	2 cut(s)	18, 165
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	239, 592
AdeI	CACNNNGTG	1 cut(s)	449
AfeI	AGCGCT	1 cut(s)	535
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	5 cut(s)	73, 239, 394, 488, 668
AluBI	AGCT	2 cut(s)	182, 520
AluI	AGCT	2 cut(s)	182, 520
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	576
Aor51HI	AGCGCT	1 cut(s)	535
AoxI	GGCC	3 cut(s)	385, 435, 735
ApeKI	GCWGC	5 cut(s)	302, 374, 377, 517, 689
ApoI	RAATTY	2 cut(s)	239, 592
Asp700I	GAANNNNTTC	2 cut(s)	30, 596
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	1 cut(s)	592
AsuNHI	GCTAGC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	249
BbvI	GCAGC	5 cut(s)	289, 361, 389, 529, 701
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	5 cut(s)	92, 179, 210, 695, 739
BfmI	CTRYAG	3 cut(s)	183, 375, 515
BfoI	RGCGCY	1 cut(s)	537
BisI	GCNGC	5 cut(s)	303, 375, 378, 518, 690
BlsI	GCNGC	5 cut(s)	304, 376, 379, 519, 691
Bme1390I	CCNGG	1 cut(s)	586
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	586
BmsI	GCATC	4 cut(s)	23, 204, 289, 361
BmtI	GCTAGC	1 cut(s)	182
BpmI	CTGGAG	2 cut(s)	186, 477
BpuEI	CTTGAG	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	681
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse1I	ACTGG	1 cut(s)	570
Bse3DI	GCAATG	2 cut(s)	129, 702
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	3 cut(s)	14, 219, 594
BseMI	GCAATG	2 cut(s)	129, 702
BseMII	CTCAG	2 cut(s)	299, 586
BseNI	ACTGG	1 cut(s)	570
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	5 cut(s)	289, 361, 389, 529, 701
BsgI	GTGCAG	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	3 cut(s)	387, 437, 737
BsiSI	CCGG	1 cut(s)	585
BsmAI	GTCTC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	387, 437, 737
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	568
BspACI	CCGC	2 cut(s)	18, 165
BspANI	GGCC	3 cut(s)	387, 437, 737
BspCNI	CTCAG	2 cut(s)	300, 585
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	201
BspMAI	CTGCAG	2 cut(s)	379, 519
BspOI	GCTAGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	576
BsrDI	GCAATG	2 cut(s)	129, 702
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	1 cut(s)	681
BssMI	GATC	1 cut(s)	568
BssT1I	CCWWGG	1 cut(s)	681
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	682
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	180, 729
BstDEI	CTNAG	3 cut(s)	308, 548, 572
BstF5I	GGATG	3 cut(s)	14, 219, 594
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	1 cut(s)	571
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	568
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 531
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	584
BstSFI	CTRYAG	3 cut(s)	183, 375, 515
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	5 cut(s)	289, 361, 389, 529, 701
BstX2I	RGATCY	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	387, 437, 737
BtsCI	GGATG	3 cut(s)	14, 219, 594
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	180, 729
CfoI	GCGC	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	386
CseI	GACGC	1 cut(s)	184
CviAII	CATG	7 cut(s)	38, 113, 172, 231, 343, 368, 430
CviJI	RGCY	7 cut(s)	76, 182, 200, 387, 437, 520, 737
CviKI_1	RGCY	7 cut(s)	76, 182, 200, 387, 437, 520, 737
DdeI	CTNAG	3 cut(s)	308, 548, 572
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
DraIII	CACNNNGTG	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	682
EarI	CTCTTC	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	681
Eco47III	AGCGCT	1 cut(s)	535
EcoRI	GAATTC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	7 cut(s)	41, 116, 175, 234, 346, 371, 433
FatI	CATG	7 cut(s)	37, 112, 171, 230, 342, 367, 429
Fnu4HI	GCNGC	5 cut(s)	303, 375, 378, 518, 690
FokI	GGATG	2 cut(s)	226, 601
Fsp4HI	GCNGC	5 cut(s)	303, 375, 378, 518, 690
FspBI	CTAG	5 cut(s)	92, 179, 210, 695, 739
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	5 cut(s)	303, 375, 378, 518, 690
GsuI	CTGGAG	2 cut(s)	186, 477
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	3 cut(s)	387, 437, 737
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	7 cut(s)	41, 116, 175, 234, 346, 371, 433
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HinfI	GANTC	3 cut(s)	155, 417, 452
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	575
Hpy188III	TCNNGA	3 cut(s)	203, 421, 456
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	41, 276, 607
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 531
HpyF3I	CTNAG	3 cut(s)	308, 548, 572
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	7 cut(s)	41, 116, 175, 234, 346, 371, 433
HspAI	GCGC	1 cut(s)	534
Kzo9I	GATC	1 cut(s)	568
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	5 cut(s)	216, 441, 551, 598, 721
Lsp1109I	GCAGC	5 cut(s)	289, 361, 389, 529, 701
LweI	GCATC	4 cut(s)	23, 204, 289, 361
MaeI	CTAG	5 cut(s)	92, 179, 210, 695, 739
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	3 cut(s)	160, 449, 622
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	1 cut(s)	669
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	5 cut(s)	54, 239, 326, 592, 616
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	280, 297
MnlI	CCTC	5 cut(s)	377, 452, 522, 617, 650
MroXI	GAANNNNTTC	2 cut(s)	30, 596
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	586
MunI	CAATTG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	351
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	116, 531
NciI	CCSGG	1 cut(s)	586
NdeII	GATC	1 cut(s)	568
NheI	GCTAGC	1 cut(s)	178
NlaIII	CATG	7 cut(s)	41, 116, 175, 234, 346, 371, 433
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	3 cut(s)	160, 449, 622
NspI	RCATGY	1 cut(s)	116
PciI	ACATGT	1 cut(s)	112
PctI	GAATGC	1 cut(s)	351
PdmI	GAANNNNTTC	2 cut(s)	30, 596
PfeI	GAWTC	2 cut(s)	155, 417
PfoI	TCCNGGA	1 cut(s)	584
PkrI	GCNGC	5 cut(s)	304, 376, 379, 519, 691
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PscI	ACATGT	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	2 cut(s)	379, 519
PsuI	RGATCY	1 cut(s)	568
SatI	GCNGC	5 cut(s)	303, 375, 378, 518, 690
Sau3AI	GATC	1 cut(s)	568
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	586
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	8 cut(s)	33, 184, 342, 463, 522, 609, 664, 687
SfaNI	GCATC	4 cut(s)	23, 204, 289, 361
SfcI	CTRYAG	3 cut(s)	183, 375, 515
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	5 cut(s)	54, 239, 326, 592, 616
SsiI	CCGC	2 cut(s)	18, 165
SspMI	CTAG	5 cut(s)	92, 179, 210, 695, 739
StyD4I	CCNGG	1 cut(s)	584
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	420, 530
TasI	AATT	5 cut(s)	54, 239, 326, 592, 616
TfiI	GAWTC	2 cut(s)	155, 417
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	3 cut(s)	160, 449, 622
TseI	GCWGC	5 cut(s)	302, 374, 377, 517, 689
Tsp45I	GTSAC	3 cut(s)	160, 449, 622
TspDTI	ATGAA	4 cut(s)	23, 495, 605, 691
TspRI	CASTG	1 cut(s)	312
XapI	RAATTY	2 cut(s)	239, 592
XceI	RCATGY	1 cut(s)	116
XmnI	GAANNNNTTC	2 cut(s)	30, 596
XspI	CTAG	5 cut(s)	92, 179, 210, 695, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.