FvH4_3g07530

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008195
Physical Location & Seq
Reverse (-)
4451457 .. 4457196
5740 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07530.t1

Sequence Viewer

Length: 1581 bp
ATGGCAGCTCCTCCAGCTAAAGCAGAAGAGATAAGCCATCCACCAATGGACCAGCTTCAGGGATTGGAGTATTGCATTGACTCAAACCCGTCTTGGGGGGAGGCAATTGCTTTGGGTTTCCAGCACTACATTTTGGCCTTGGGAACTGCTGTGATGATCCCATCATTTCTTGTGCCTTTGATGGGTGGCACTGATGGTGACAAAGTGAGAGTGATACAGACTCTGCTTTTCATTGAAGGAATCAATACACTTCTGCAGACATTGTTTGGAACAAGATTGCCAACTGTGATTGGAGGGTCTTATGCGTTCATGGTTCCGATCATATCCATCATTCAGGATTCTTCATTGGAAACTATTATCGATCCTCATACTAGGTTTCTGAACACCATGAGAGCAGTCCAAGGTGCCTTGATTGTATCATCAAGCATACAGATTATTCTGGGATACAGTCAAATTTGGGCCATCTGTTCCAGGTTCTTCAGTCCACTTGGAATGGTTCCTGTTATTGCATTGGTGGGTTTCGGCATGTTTGATAGAGGCTTCCCATTGGTTGGGAGATGTGTTGAAATTGGCATTCCAATGCTTATCCTATTTGTAGCTTTCTCTCAGTACTTGAAGAACTTCCATCTAAAACAGATACCGGTGCTAGAGAGATTTGCACTTATTATATCAATCACAGTGATATGGGCATATGCACACCTCTTGACAGCCAGTGGCGCATACAGACACCGCCCAGAAGCTACCGAATTCAGCTGCCGAACTGACAGGGCCAACCTCATTTCCTCTGCTCCATGGATAAAAATACCATATCCTCTTCAGTGGGGTGCCCCTACCTTTAGTGCTGGTCACTCTTTCGGTATGATGGCTGCTGTTCTAGTTTCATTGATTGAGTCAACTGGAGCATACAAGGCTGCATCACGTCTAGCAAGTGCTACACCACCTCCAGCTCATGTTCTTAGCCGTGGTATCGGATGGCAGGGGATAGGAATTCTTCTTAATGGACTATTTGGAACATTGACAGGCTCAACAGTCTCCGTAGAAAATGTGGGGCTTCTTGGTAGCACTCGTGTTGGCAGCCGCAGGGTTATTCAAATCTCAGCTGGTTTTATGATATTCTTCTCCATGCTGGGAAAATTTGGGGCGCTCTTTGCATCAATACCCTTCCCCATATTTGCTGCTGCATATTGTGTATTGTTTGGTTTTGTTGCTTCGGTGGGGCTATCCTTCTTGCAATTCACAAACATGAACTCAATGAGAAACCTCTTTATTGTTGGCGTATCCTTGTTTTTGGGTTTGTCTGTGCCGGAGTATTTCAGGGAATACAGTATAATGGCTCATCATGCTCCTGCTCACACAAAAGCTGGATGGTTCAACGATTATCTGAATACCATCTTCTCATCATCTCCAACTGTGGCCTTGCTTGTCGCCGTCTTCTTAGATAACACACTCGAGTACAAGGAAAGTGCAAGAGACAGAGGAATGCCATGGTGGGCCAAATTTCGGGCATTCAAAGGGGACAGCCGAAATGAGGAGTTTTACACTCTCCCCTTCAACCTTAATCGATTCTTCCCTCCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

527

Amino Acids

57.65

Weight (kDa)

8.88

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 34 - 438 5.9e-63 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 404, 824
AccB7I CCANNNNNTGG 1 cut(s) 551
AciI CCGC 2 cut(s) 730, 1078
AclWI GGATC 2 cut(s) 151, 356
AcsI RAATTY 5 cut(s) 453, 746, 987, 1133, 1496
AcuI CTGAAG 3 cut(s) 41, 463, 800
AfaI GTAC 2 cut(s) 611, 1454
AfiI CCNNNNNNNGG 7 cut(s) 58, 94, 95, 182, 551, 1500, 1528
AgeI ACCGGT 1 cut(s) 640
AgsI TTSAA 7 cut(s) 236, 566, 616, 1091, 1372, 1510, 1552
AjiI CACGTC 1 cut(s) 920
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 9 cut(s) 8, 17, 55, 599, 740, 753, 947, 1100, 1361
AluI AGCT 9 cut(s) 8, 17, 55, 599, 740, 753, 947, 1100, 1361
Alw26I GTCTC 2 cut(s) 1036, 1464
AlwI GGATC 2 cut(s) 151, 356
AlwNI CAGNNNCTG 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 1448
AoxI GGCC 5 cut(s) 135, 459, 768, 1413, 1491
ApeKI GCWGC 7 cut(s) 5, 753, 866, 911, 1074, 1175, 1178
ApoI RAATTY 5 cut(s) 453, 746, 987, 1133, 1496
AsiGI ACCGGT 1 cut(s) 640
Asp700I GAANNNNTTC 1 cut(s) 620
AspLEI GCGC 2 cut(s) 719, 1144
AspS9I GGNCC 4 cut(s) 49, 459, 768, 1491
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 1448
AvaII GGWCC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 829
BanI GGYRCC 2 cut(s) 404, 824
BauI CACGAG 1 cut(s) 1065
BbsI GAAGAC 1 cut(s) 1423
BbvI GCAGC 7 cut(s) 17, 740, 853, 898, 1086, 1162, 1165
BceAI ACGGC 2 cut(s) 945, 1412
BciT130I CCWGG 1 cut(s) 472
BciVI GTATCC 2 cut(s) 437, 1288
BcoDI GTCTC 2 cut(s) 1036, 1464
BfaI CTAG 4 cut(s) 372, 647, 875, 923
BfmI CTRYAG 1 cut(s) 254
BfoI RGCGCY 1 cut(s) 1145
BfuI GTATCC 2 cut(s) 437, 1288
BisI GCNGC 8 cut(s) 6, 754, 867, 912, 1075, 1078, 1176, 1179
BlsI GCNGC 8 cut(s) 7, 755, 868, 913, 1076, 1079, 1177, 1180
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 1448
BmgBI CACGTC 1 cut(s) 920
BmgT120I GGNCC 4 cut(s) 49, 459, 768, 1491
BmiI GGNNCC 4 cut(s) 315, 406, 498, 826
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 2 cut(s) 923, 1160
BpiI GAAGAC 1 cut(s) 1423
BpmI CTGGAG 2 cut(s) 918, 927
Bsa29I ATCGAT 2 cut(s) 360, 1561
BsaJI CCNNGG 5 cut(s) 138, 400, 791, 961, 1484
BsaWI WCCGGW 1 cut(s) 640
BsaXI ACNNNNNCTCC 2 cut(s) 925, 955
Bsc4I CCNNNNNNNGG 7 cut(s) 58, 94, 95, 182, 551, 1500, 1528
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 2 cut(s) 711, 901
BseBI CCWGG 1 cut(s) 472
BseCI ATCGAT 2 cut(s) 360, 1561
BseDI CCNNGG 5 cut(s) 138, 400, 791, 961, 1484
BseGI GGATG 3 cut(s) 37, 977, 1370
BseLI CCNNNNNNNGG 7 cut(s) 58, 94, 95, 182, 551, 1500, 1528
BseMII CTCAG 2 cut(s) 620, 1110
BseNI ACTGG 2 cut(s) 711, 901
BseRI GAGGAG 1 cut(s) 1544
BseSI GKGCMC 1 cut(s) 829
BseXI GCAGC 7 cut(s) 17, 740, 853, 898, 1086, 1162, 1165
BseYI CCCAGC 1 cut(s) 1126
BshFI GGCC 5 cut(s) 137, 461, 770, 1415, 1493
BshNI GGYRCC 2 cut(s) 404, 824
BshTI ACCGGT 1 cut(s) 640
BshVI ATCGAT 2 cut(s) 360, 1561
BsiHKCI CYCGRG 1 cut(s) 1448
BsiSI CCGG 2 cut(s) 641, 1304
BslFI GGGAC 1 cut(s) 1529
BslI CCNNNNNNNGG 7 cut(s) 58, 94, 95, 182, 551, 1500, 1528
BsmAI GTCTC 2 cut(s) 1036, 1464
BsmFI GGGAC 1 cut(s) 1529
BsmI GAATGC 3 cut(s) 573, 1485, 1505
BsnI GGCC 5 cut(s) 137, 461, 770, 1415, 1493
BsoBI CYCGRG 1 cut(s) 1448
Bsp1286I GDGCHC 1 cut(s) 829
Bsp143I GATC 3 cut(s) 156, 318, 361
Bsp19I CCATGG 2 cut(s) 791, 1484
BspACI CCGC 2 cut(s) 730, 1078
BspANI GGCC 5 cut(s) 137, 461, 770, 1415, 1493
BspCNI CTCAG 2 cut(s) 619, 1109
BspDI ATCGAT 2 cut(s) 360, 1561
BspLI GGNNCC 4 cut(s) 315, 406, 498, 826
BspMAI CTGCAG 1 cut(s) 258
BspPI GGATC 2 cut(s) 151, 356
BspT107I GGYRCC 2 cut(s) 404, 824
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 2 cut(s) 711, 901
BssAI RCCGGY 1 cut(s) 640
BssECI CCNNGG 5 cut(s) 138, 400, 791, 961, 1484
BssMI GATC 3 cut(s) 156, 318, 361
BssSI CACGAG 1 cut(s) 1065
BssT1I CCWWGG 4 cut(s) 138, 400, 791, 1484
Bst2BI CACGAG 1 cut(s) 1065
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 6 cut(s) 286, 449, 679, 1030, 1325, 1411
Bst6I CTCTTC 2 cut(s) 21, 819
BstDEI CTNAG 4 cut(s) 606, 956, 1096, 1435
BstDSI CCRYGG 3 cut(s) 791, 961, 1484
BstF5I GGATG 3 cut(s) 37, 977, 1370
BstH2I RGCGCY 1 cut(s) 1145
BstHHI GCGC 2 cut(s) 719, 1144
BstKTI GATC 3 cut(s) 159, 321, 364
BstMAI GTCTC 2 cut(s) 1036, 1464
BstMBI GATC 3 cut(s) 156, 318, 361
BstMWI GCNNNNNNNGC 5 cut(s) 14, 716, 908, 1148, 1340
BstNI CCWGG 1 cut(s) 472
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 470
BstSFI CTRYAG 1 cut(s) 254
BstSLI GKGCMC 1 cut(s) 829
BstV1I GCAGC 7 cut(s) 17, 740, 853, 898, 1086, 1162, 1165
BstV2I GAAGAC 1 cut(s) 1423
Bsu15I ATCGAT 2 cut(s) 360, 1561
BsuI GTATCC 2 cut(s) 437, 1288
BsuRI GGCC 5 cut(s) 137, 461, 770, 1415, 1493
BsuTUI ATCGAT 2 cut(s) 360, 1561
BtgI CCRYGG 3 cut(s) 791, 961, 1484
BtrI CACGTC 1 cut(s) 920
BtsCI GGATG 3 cut(s) 37, 977, 1370
BtsIMutI CAGTG 4 cut(s) 189, 684, 718, 824
CaiI CAGNNNCTG 1 cut(s) 223
CfoI GCGC 2 cut(s) 719, 1144
Cfr10I RCCGGY 1 cut(s) 640
Cfr13I GGNCC 4 cut(s) 49, 459, 768, 1491
ClaI ATCGAT 2 cut(s) 360, 1561
Csp6I GTAC 2 cut(s) 610, 1453
CspAI ACCGGT 1 cut(s) 640
CviAII CATG 9 cut(s) 310, 388, 526, 792, 950, 1123, 1243, 1340, 1485
CviQI GTAC 2 cut(s) 610, 1453
DdeI CTNAG 4 cut(s) 606, 956, 1096, 1435
DpnI GATC 3 cut(s) 158, 320, 363
DpnII GATC 3 cut(s) 156, 318, 361
Eam1104I CTCTTC 2 cut(s) 21, 819
EarI CTCTTC 2 cut(s) 21, 819
Eco130I CCWWGG 4 cut(s) 138, 400, 791, 1484
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 3 cut(s) 41, 463, 800
Eco88I CYCGRG 1 cut(s) 1448
EcoRI GAATTC 2 cut(s) 746, 987
EcoRII CCWGG 1 cut(s) 470
EcoT14I CCWWGG 4 cut(s) 138, 400, 791, 1484
ErhI CCWWGG 4 cut(s) 138, 400, 791, 1484
FaeI CATG 9 cut(s) 313, 391, 529, 795, 953, 1126, 1246, 1343, 1488
FaqI GGGAC 1 cut(s) 1529
FatI CATG 9 cut(s) 309, 387, 525, 791, 949, 1122, 1242, 1339, 1484
FauNDI CATATG 1 cut(s) 691
Fnu4HI GCNGC 8 cut(s) 6, 754, 867, 912, 1075, 1078, 1176, 1179
FokI GGATG 3 cut(s) 24, 984, 1377
Fsp4HI GCNGC 8 cut(s) 6, 754, 867, 912, 1075, 1078, 1176, 1179
FspBI CTAG 4 cut(s) 372, 647, 875, 923
GlaI GCGC 2 cut(s) 718, 1143
GluI GCNGC 8 cut(s) 6, 754, 867, 912, 1075, 1078, 1176, 1179
GsaI CCCAGC 1 cut(s) 1130
GsuI CTGGAG 2 cut(s) 918, 927
HaeII RGCGCY 1 cut(s) 1145
HaeIII GGCC 5 cut(s) 137, 461, 770, 1415, 1493
HapII CCGG 2 cut(s) 641, 1304
HhaI GCGC 2 cut(s) 719, 1144
Hin1II CATG 9 cut(s) 313, 391, 529, 795, 953, 1126, 1246, 1343, 1488
Hin6I GCGC 2 cut(s) 717, 1142
HinP1I GCGC 2 cut(s) 717, 1142
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HinfI GANTC 6 cut(s) 80, 220, 240, 338, 890, 1563
HpaII CCGG 2 cut(s) 641, 1304
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 485, 894
Hpy188I TCNGA 4 cut(s) 318, 381, 971, 1383
Hpy188III TCNNGA 2 cut(s) 335, 703
Hpy8I GTNNAC 2 cut(s) 485, 894
HpyAV CCTTC 4 cut(s) 230, 1171, 1234, 1558
HpyCH4III ACNGT 6 cut(s) 286, 449, 679, 1030, 1325, 1411
HpyCH4IV ACGT 1 cut(s) 919
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 716, 908, 1148, 1340
HpyF3I CTNAG 4 cut(s) 606, 956, 1096, 1435
HpySE526I ACGT 1 cut(s) 919
Hsp92II CATG 9 cut(s) 313, 391, 529, 795, 953, 1126, 1246, 1343, 1488
HspAI GCGC 2 cut(s) 717, 1142
Kzo9I GATC 3 cut(s) 156, 318, 361
LmnI GCTCC 4 cut(s) 13, 793, 899, 1348
Lsp1109I GCAGC 7 cut(s) 17, 740, 853, 898, 1086, 1162, 1165
LweI GCATC 2 cut(s) 923, 1160
MaeI CTAG 4 cut(s) 372, 647, 875, 923
MaeII ACGT 1 cut(s) 919
MaeIII GTNAC 2 cut(s) 197, 845
MalI GATC 3 cut(s) 158, 320, 363
MboI GATC 3 cut(s) 156, 318, 361
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 829
MluCI AATT 8 cut(s) 105, 453, 567, 746, 987, 1133, 1232, 1496
MlyI GAGTC 3 cut(s) 74, 214, 899
MmeI TCCRAC 1 cut(s) 1430
MroXI GAANNNNTTC 1 cut(s) 620
MseI TTAA 3 cut(s) 996, 1557, 1579
MslI CAYNNNNRTG 2 cut(s) 578, 1241
MspA1I CMGCKG 2 cut(s) 753, 1100
MspI CCGG 2 cut(s) 641, 1304
MspR9I CCNGG 1 cut(s) 472
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 3 cut(s) 573, 1485, 1505
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 5 cut(s) 14, 716, 908, 1148, 1340
NcoI CCATGG 2 cut(s) 791, 1484
NdeI CATATG 1 cut(s) 691
NdeII GATC 3 cut(s) 156, 318, 361
NlaIII CATG 9 cut(s) 313, 391, 529, 795, 953, 1126, 1246, 1343, 1488
NlaIV GGNNCC 4 cut(s) 315, 406, 498, 826
NmuCI GTSAC 2 cut(s) 197, 845
NspI RCATGY 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 1448
PctI GAATGC 3 cut(s) 573, 1485, 1505
PdmI GAANNNNTTC 1 cut(s) 620
PfeI GAWTC 3 cut(s) 240, 338, 1563
PflMI CCANNNNNTGG 1 cut(s) 551
PinAI ACCGGT 1 cut(s) 640
PkrI GCNGC 8 cut(s) 7, 755, 868, 913, 1076, 1079, 1177, 1180
PleI GAGTC 3 cut(s) 74, 214, 898
PpsI GAGTC 3 cut(s) 74, 214, 898
Psp6I CCWGG 1 cut(s) 470
PspFI CCCAGC 1 cut(s) 1126
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 4 cut(s) 315, 406, 498, 826
PspPI GGNCC 4 cut(s) 49, 459, 768, 1491
PspXI VCTCGAGB 1 cut(s) 1448
PstI CTGCAG 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 223
PvuII CAGCTG 2 cut(s) 753, 1100
RsaI GTAC 2 cut(s) 611, 1454
RsaNI GTAC 2 cut(s) 610, 1453
RseI CAYNNNNRTG 2 cut(s) 578, 1241
SaqAI TTAA 3 cut(s) 996, 1557, 1579
SatI GCNGC 8 cut(s) 6, 754, 867, 912, 1075, 1078, 1176, 1179
Sau3AI GATC 3 cut(s) 156, 318, 361
Sau96I GGNCC 4 cut(s) 49, 459, 768, 1491
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 3 cut(s) 74, 214, 899
ScrFI CCNGG 1 cut(s) 472
SduI GDGCHC 1 cut(s) 829
SfaNI GCATC 2 cut(s) 923, 1160
SfcI CTRYAG 1 cut(s) 254
Sfr274I CTCGAG 1 cut(s) 1448
SinI GGWCC 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 1448
SmiMI CAYNNNNRTG 2 cut(s) 578, 1241
SmlI CTYRAG 1 cut(s) 1448
SmoI CTYRAG 1 cut(s) 1448
Sse9I AATT 8 cut(s) 105, 453, 567, 746, 987, 1133, 1232, 1496
SsiI CCGC 2 cut(s) 730, 1078
SspMI CTAG 4 cut(s) 372, 647, 875, 923
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 4 cut(s) 138, 400, 791, 1484
TaaI ACNGT 6 cut(s) 286, 449, 679, 1030, 1325, 1411
TaiI ACGT 1 cut(s) 922
TaqI TCGA 3 cut(s) 360, 1449, 1561
TasI AATT 8 cut(s) 105, 453, 567, 746, 987, 1133, 1232, 1496
TatI WGTACW 2 cut(s) 609, 1452
TauI GCSGC 1 cut(s) 1080
TfiI GAWTC 3 cut(s) 240, 338, 1563
Tru1I TTAA 3 cut(s) 996, 1557, 1579
Tru9I TTAA 3 cut(s) 996, 1557, 1579
TscAI CASTG 4 cut(s) 196, 684, 718, 824
TseFI GTSAC 2 cut(s) 197, 845
TseI GCWGC 7 cut(s) 5, 753, 866, 911, 1074, 1175, 1178
Tsp45I GTSAC 2 cut(s) 197, 845
TspDTI ATGAA 5 cut(s) 220, 298, 333, 870, 1259
TspGWI ACGGA 1 cut(s) 1024
TspRI CASTG 4 cut(s) 196, 684, 718, 824
Van91I CCANNNNNTGG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 5 cut(s) 453, 746, 987, 1133, 1496
XceI RCATGY 1 cut(s) 529
XhoI CTCGAG 1 cut(s) 1448
XmnI GAANNNNTTC 1 cut(s) 620
XspI CTAG 4 cut(s) 372, 647, 875, 923
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.