Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017290.1

Orthogroup ID

OG0008195

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1330

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017290.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 787 bp

gataaaaataccatatcctcttcagtggggtgcccctacctttagcgctggtcactcttttggtatgatggcagctgttctagtttcgttgattgagtcaactggagcatacaaggctgcatcacgtctagcaagtgctacaccacctccagctcatgttcttagccgtggtatcggatggcaggggataggaatccttcttaatggactatttggaacattgacaggctcaacagtctctgtagaaaatgtggggcttcttggtagcactcgtgttggaagccgtagggttattcaaatctcggctggttttatgatattcttctccttgttgggaaaatttggagctttatttgcatcaatacccttccccatatttgctgctgcatattgcgtattgtttggttttgttgcttcggtggggctatccttcttgcaattcacaaacatgaactcgatgagaaacctctttatcgttggcgtatctttgtttttgggtttgtctgtgcccgagtatttcagggaatacagtataatggctcatcatgctccagctcatacaaaagctggatggttcaatgattatcttaataccatcttctcatcatctccaactgtggccttgcttgtcgccgttttcttagataacacacttgaatacaaggaaagtgcaagagacagaggaatgccatggtgggccaaatttcgggcattcaaaggggacagccgaaatgaagagttttacactctccccttcaaccttaatcgattcttccctccatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

261

Amino Acids

28.51

Weight (kDa)

9.71

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34190
fragaria_vesca	FvH4_3g07530 FvH4_3g07530 FvH4_3g07530
malus_domestica	MD05G1298500.v1.1 MD10G1277800.v1.1
prunus_persica	Prupe.4G064000_v2.0.a1 Prupe.4G064000_v2.0.a1
pyrus_communis	pycom05g27630 pycom10g23180
rosa_chinensis	RchiOBHm_Chr5g0011241
rosa_laevigata	RLG00000031821
rosa_multiflora	Rmu_sc0003242.1_g000035 Rmu_sc0017290.1_g000001 Rmu_sc0038215.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065160
rosa_rugosa	Rorug04G0456000 Rorug04G0456100
rosa_samantha	Rh5AG088000 Rh5BG082800 Rh5CG095800 Rh5DG082700
rosa_wichuraiana	Rw5G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	339, 702
AcuI	CTGAAG	1 cut(s)	6
AfeI	AGCGCT	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	706
AgsI	TTSAA	5 cut(s)	297, 578, 657, 716, 758
AjiI	CACGTC	1 cut(s)	126
AluBI	AGCT	5 cut(s)	75, 153, 348, 555, 567
AluI	AGCT	5 cut(s)	75, 153, 348, 555, 567
Alw26I	GTCTC	2 cut(s)	242, 670
AlwNI	CAGNNNCTG	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	510
Aor51HI	AGCGCT	1 cut(s)	47
AoxI	GGCC	2 cut(s)	619, 697
ApeKI	GCWGC	4 cut(s)	72, 117, 381, 384
ApoI	RAATTY	2 cut(s)	339, 702
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	697
AvaI	CYCGRG	1 cut(s)	510
BaeGI	GKGCMC	2 cut(s)	35, 511
BanI	GGYRCC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	271
BbvI	GCAGC	4 cut(s)	84, 104, 368, 371
BccI	CCATC	4 cut(s)	62, 172, 565, 603
BceAI	ACGGC	3 cut(s)	151, 268, 618
BcoDI	GTCTC	2 cut(s)	242, 670
BfaI	CTAG	2 cut(s)	81, 129
BfmI	CTRYAG	1 cut(s)	241
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	4 cut(s)	73, 118, 382, 385
BlsI	GCNGC	4 cut(s)	74, 119, 383, 386
BmeT110I	CYCGRG	1 cut(s)	510
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	697
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	2 cut(s)	129, 366
BpmI	CTGGAG	3 cut(s)	124, 133, 535
Bsa29I	ATCGAT	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	167, 690
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse1I	ACTGG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	767
BseDI	CCNNGG	2 cut(s)	167, 690
BseGI	GGATG	2 cut(s)	183, 576
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseNI	ACTGG	1 cut(s)	107
BseSI	GKGCMC	2 cut(s)	35, 511
BseXI	GCAGC	4 cut(s)	84, 104, 368, 371
BshFI	GGCC	2 cut(s)	621, 699
BshNI	GGYRCC	1 cut(s)	30
BshVI	ATCGAT	1 cut(s)	767
BsiHKCI	CYCGRG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	2 cut(s)	242, 670
BsmFI	GGGAC	1 cut(s)	735
BsmI	GAATGC	2 cut(s)	691, 711
BsnI	GGCC	2 cut(s)	621, 699
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	2 cut(s)	35, 511
Bsp19I	CCATGG	1 cut(s)	690
BspANI	GGCC	2 cut(s)	621, 699
BspDI	ATCGAT	1 cut(s)	767
BspLI	GGNNCC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	167, 690
BssSI	CACGAG	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	690
Bst2BI	CACGAG	1 cut(s)	271
Bst4CI	ACNGT	3 cut(s)	236, 531, 617
Bst6I	CTCTTC	2 cut(s)	25, 730
BstDEI	CTNAG	2 cut(s)	162, 641
BstDSI	CCRYGG	2 cut(s)	167, 690
BstF5I	GGATG	2 cut(s)	183, 576
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	48
BstMAI	GTCTC	2 cut(s)	242, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 354, 546
BstSFI	CTRYAG	1 cut(s)	241
BstSLI	GKGCMC	2 cut(s)	35, 511
BstV1I	GCAGC	4 cut(s)	84, 104, 368, 371
Bsu15I	ATCGAT	1 cut(s)	767
BsuRI	GGCC	2 cut(s)	621, 699
BsuTUI	ATCGAT	1 cut(s)	767
BtgI	CCRYGG	2 cut(s)	167, 690
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	183, 576
BtsIMutI	CAGTG	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	240
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	697
ClaI	ATCGAT	1 cut(s)	767
CviAII	CATG	4 cut(s)	156, 449, 546, 691
DdeI	CTNAG	2 cut(s)	162, 641
Eam1104I	CTCTTC	2 cut(s)	25, 730
EarI	CTCTTC	2 cut(s)	25, 730
Eco130I	CCWWGG	1 cut(s)	690
Eco47III	AGCGCT	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	4 cut(s)	159, 452, 549, 694
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	4 cut(s)	155, 448, 545, 690
Fnu4HI	GCNGC	4 cut(s)	73, 118, 382, 385
FokI	GGATG	2 cut(s)	190, 583
Fsp4HI	GCNGC	4 cut(s)	73, 118, 382, 385
FspBI	CTAG	2 cut(s)	81, 129
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	4 cut(s)	73, 118, 382, 385
GsuI	CTGGAG	3 cut(s)	124, 133, 535
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	2 cut(s)	621, 699
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	159, 452, 549, 694
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	96, 193, 769
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	177
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	4 cut(s)	207, 377, 440, 764
HpyCH4III	ACNGT	3 cut(s)	236, 531, 617
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	5 cut(s)	120, 357, 387, 437, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 354, 546
HpyF3I	CTNAG	2 cut(s)	162, 641
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	4 cut(s)	159, 452, 549, 694
HspAI	GCGC	1 cut(s)	46
LmnI	GCTCC	3 cut(s)	105, 345, 554
LpnPI	CCDG	9 cut(s)	34, 88, 163, 168, 211, 292, 506, 553, 565
Lsp1109I	GCAGC	4 cut(s)	84, 104, 368, 371
LweI	GCATC	2 cut(s)	129, 366
MaeI	CTAG	2 cut(s)	81, 129
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	51
MboII	GAAGA	5 cut(s)	12, 314, 590, 747, 764
MhlI	GDGCHC	2 cut(s)	35, 511
MluCI	AATT	3 cut(s)	339, 438, 702
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	2 cut(s)	257, 636
MnlI	CCTC	5 cut(s)	28, 157, 477, 675, 787
MseI	TTAA	4 cut(s)	202, 589, 763, 785
MslI	CAYNNNNRTG	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	75
Mva1269I	GAATGC	2 cut(s)	691, 711
MwoI	GCNNNNNNNGC	3 cut(s)	114, 354, 546
NcoI	CCATGG	1 cut(s)	690
NlaIII	CATG	4 cut(s)	159, 452, 549, 694
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	51
PctI	GAATGC	2 cut(s)	691, 711
PfeI	GAWTC	2 cut(s)	193, 769
PkrI	GCNGC	4 cut(s)	74, 119, 383, 386
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	240
PvuII	CAGCTG	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	4 cut(s)	202, 589, 763, 785
SatI	GCNGC	4 cut(s)	73, 118, 382, 385
Sau96I	GGNCC	1 cut(s)	697
SchI	GAGTC	1 cut(s)	105
SduI	GDGCHC	2 cut(s)	35, 511
SfaNI	GCATC	2 cut(s)	129, 366
SfcI	CTRYAG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	447
Sse9I	AATT	3 cut(s)	339, 438, 702
SspMI	CTAG	2 cut(s)	81, 129
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	3 cut(s)	236, 531, 617
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	456, 767
TasI	AATT	3 cut(s)	339, 438, 702
TfiI	GAWTC	2 cut(s)	193, 769
Tru1I	TTAA	4 cut(s)	202, 589, 763, 785
Tru9I	TTAA	4 cut(s)	202, 589, 763, 785
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	4 cut(s)	72, 117, 381, 384
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	2 cut(s)	465, 748
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	2 cut(s)	339, 702
XspI	CTAG	2 cut(s)	81, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.