Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008195

Physical Location & Seq

Genomic Coordinates Reverse (-)

25397897 .. 25401310

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23180.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGGAAGCTCCAAAACCAGAAGAGATAAGCCATCCAGCAATGGACCAACTCCAAGGCTTAGAGTACTGCATTGACTCAAATCCCTCTTGGGCGGAAGCAATTGCTTTGGGTTTTCAGCACTACATTTTGGCCTTGGGAACTGCTGTGATGATCCCCACATTCCTTGTTCCTTTCATGGGTGGTGATGATGGTGACAAAGTGAGAGTAGTGCAGACTCTCCTTTTTATTCAAGGAATCAACACACTTCTACAAACATTGTTTGGAACCCGTTTGCCAACCGTGATTGGAGGGTCTTACGCATTCATGGTCCCGATAATATCCATAATTCATGATTCCCGCTTGATGAAGATTGAGGACAATCATGCGAGATTCCTTGACACCATGAGAGCAGTCCAAGGGGCTCTGATAGTAGCTTCAAGCATACAAATTATTCTGGGATATAGTCAAATTTGGGCCATCTGTTCCAGGTTCTTCAGCCCGCTCGGAATGGTTCCAGTTATTTCCTTGGTGGGTTTTGGTCTGTTTGATAGAGGCTTCCCCCTGGTTGGAAAGTGTGTGGAAATTGGCATTCCTATGCTTATTCTTTTTGTAGCTTTCTCTCAGTACCTAAAGAACTTCCATGCAAGACAGCTACCAGTATTGGAACGATTTGCTCTTCTTATATCAGTCACAGTGATATGGGCATATGCACACCTCTTGACCGCCAGTGGTGCATACAGACACCGCCCAGACATAACCCAAGTCAATTGCCGAACTGATAGGGCCCACCTCATTTCTTCTGCTCCATGGATAAAAATACCTTATCCTCTTCAATGGGGTGCCCCAACCTTTGATGCTGGTCATGCTTTTGGAATGATGGCTGCCGTTTTTGTTTCATTGATCGAGTCAACTGGAGCATACAAGGCTGCATCGCGTCTAGCAAGTGCCACAATACCTCCAGCTCATGTTCTCAGCCGTGGAATTGGCTGGCAGGGAATAGGAATCCTACTAAATGGACTCTTTGGGACGTTGTCAGGCTCAACAGTCTCTATAGAAAATGTGGGGCTTCTTGGGAGCACTCGTGTTGGAAGCCGTAGGGTCATTCAAATCTCAGCCGGTTTTATGATATTCTTCTCCATGTTAGGTAAATTTGGAGCTCTGTTCGCATCAATACCCTTCACCATATTTGCTGCTGCCTATTGTGTATTGTTCGGTCTTGTTGCTTCGGTGGGGTTATCCTTTTTGCAATTCACCAACATGAACTCGACGAGGAACCTCTTTATTGTTGGTGTAGCTTTCTTCTTGGGTTTGTCTGTTCCCGAGTACTTCAGGGGTTACACTTTGAAGGCTTTCCATGGTCCTGCTCATACCAATGCCGGATGGTTCAATGATTTTCTGAATACCATCTTCTCCTCATCTCCAACTGTGGCATTGATTGTCGCCGTTTTCCTGGATAACACACTTGAGTACAAGGACAGTGCAAGAGACAGAGGAATGCCGTGGTGGGTCAAATTTCGGCAATTCAAAGGGGACAGCCGCAACGAGGAGTTTTACACTCTCCCTTTCAACCTTAACCGATTCTTCCCTCCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

525

Amino Acids

57.67

Weight (kDa)

9.02

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34190
fragaria_vesca	FvH4_3g07530 FvH4_3g07530 FvH4_3g07530
malus_domestica	MD05G1298500.v1.1 MD10G1277800.v1.1
prunus_persica	Prupe.4G064000_v2.0.a1 Prupe.4G064000_v2.0.a1
pyrus_communis	pycom05g27630 pycom10g23180
rosa_chinensis	RchiOBHm_Chr5g0011241
rosa_laevigata	RLG00000031821
rosa_multiflora	Rmu_sc0003242.1_g000035 Rmu_sc0017290.1_g000001 Rmu_sc0038215.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065160
rosa_rugosa	Rorug04G0456000 Rorug04G0456100
rosa_samantha	Rh5AG088000 Rh5BG082800 Rh5CG095800 Rh5DG082700
rosa_wichuraiana	Rw5G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	818
AccBSI	CCGCTC	1 cut(s)	481
AccII	CGCG	1 cut(s)	913
AciI	CCGC	6 cut(s)	92, 337, 479, 702, 724, 1516
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	3 cut(s)	447, 1127, 1490
AcuI	CTGAAG	2 cut(s)	457, 1291
AfaI	GTAC	4 cut(s)	65, 605, 1304, 1448
AfiI	CCNNNNNNNGG	3 cut(s)	176, 545, 1522
AgsI	TTSAA	8 cut(s)	230, 417, 812, 1085, 1324, 1366, 1504, 1546
AjnI	CCWGG	3 cut(s)	464, 540, 1428
AluBI	AGCT	7 cut(s)	8, 413, 593, 631, 941, 1136, 1274
AluI	AGCT	7 cut(s)	8, 413, 593, 631, 941, 1136, 1274
Alw21I	GWGCWC	2 cut(s)	1058, 1138
Alw26I	GTCTC	2 cut(s)	1030, 1458
AlwI	GGATC	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	1298
AoxI	GGCC	3 cut(s)	129, 453, 762
ApaI	GGGCCC	1 cut(s)	766
ApeKI	GCWGC	4 cut(s)	860, 905, 1169, 1172
ApoI	RAATTY	3 cut(s)	447, 1127, 1490
Asp700I	GAANNNNTTC	1 cut(s)	1328
AspS9I	GGNCC	6 cut(s)	43, 307, 453, 762, 763, 1337
AsuHPI	GGTGA	4 cut(s)	194, 203, 1150, 1222
AvaI	CYCGRG	1 cut(s)	1298
AvaII	GGWCC	3 cut(s)	43, 307, 1337
BaeGI	GKGCMC	2 cut(s)	766, 823
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	3 cut(s)	403, 766, 1138
BauI	CACGAG	1 cut(s)	1059
Bbv12I	GWGCWC	2 cut(s)	1058, 1138
BbvI	GCAGC	4 cut(s)	847, 892, 1156, 1159
BccI	CCATC	6 cut(s)	39, 182, 464, 850, 1353, 1391
BceAI	ACGGC	5 cut(s)	848, 939, 1056, 1406, 1462
BciT130I	CCWGG	3 cut(s)	466, 542, 1430
BcoDI	GTCTC	2 cut(s)	1030, 1458
BfaI	CTAG	1 cut(s)	917
BfmI	CTRYAG	1 cut(s)	1029
BisI	GCNGC	5 cut(s)	861, 906, 1170, 1173, 1516
BlsI	GCNGC	5 cut(s)	862, 907, 1171, 1174, 1517
BmcAI	AGTACT	2 cut(s)	65, 1304
Bme1390I	CCNGG	3 cut(s)	466, 542, 1430
Bme18I	GGWCC	3 cut(s)	43, 307, 1337
BmeT110I	CYCGRG	1 cut(s)	1298
BmgT120I	GGNCC	6 cut(s)	43, 307, 453, 762, 763, 1337
BmiI	GGNNCC	6 cut(s)	265, 309, 492, 764, 820, 1253
BmrFI	CCNGG	3 cut(s)	466, 542, 1430
BmsI	GCATC	3 cut(s)	823, 917, 1154
BpmI	CTGGAG	2 cut(s)	912, 921
BpuEI	CTTGAG	1 cut(s)	1463
BsaJI	CCNNGG	9 cut(s)	52, 132, 394, 504, 540, 785, 955, 1333, 1478
BsaXI	ACNNNNNCTCC	4 cut(s)	919, 949, 1045, 1075
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 545, 1522
Bse118I	RCCGGY	1 cut(s)	1094
Bse1I	ACTGG	4 cut(s)	494, 635, 705, 895
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	3 cut(s)	466, 542, 1430
BseDI	CCNNGG	9 cut(s)	52, 132, 394, 504, 540, 785, 955, 1333, 1478
BseGI	GGATG	2 cut(s)	31, 1364
BseLI	CCNNNNNNNGG	3 cut(s)	176, 545, 1522
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	614, 964, 1104
BseNI	ACTGG	4 cut(s)	494, 635, 705, 895
BseRI	GAGGAG	2 cut(s)	1381, 1538
BseSI	GKGCMC	2 cut(s)	766, 823
BseXI	GCAGC	4 cut(s)	847, 892, 1156, 1159
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	913
BshFI	GGCC	3 cut(s)	131, 455, 764
BshNI	GGYRCC	1 cut(s)	818
BsiHKAI	GWGCWC	2 cut(s)	1058, 1138
BsiHKCI	CYCGRG	1 cut(s)	1298
BsiSI	CCGG	2 cut(s)	1095, 1356
BslFI	GGGAC	3 cut(s)	293, 1018, 1523
BslI	CCNNNNNNNGG	3 cut(s)	176, 545, 1522
BsmAI	GTCTC	2 cut(s)	1030, 1458
BsmFI	GGGAC	3 cut(s)	293, 1018, 1523
BsmI	GAATGC	3 cut(s)	299, 567, 1479
BsnI	GGCC	3 cut(s)	131, 455, 764
BsoBI	CYCGRG	1 cut(s)	1298
Bsp120I	GGGCCC	1 cut(s)	762
Bsp1286I	GDGCHC	5 cut(s)	403, 766, 823, 1058, 1138
Bsp143I	GATC	2 cut(s)	150, 879
Bsp19I	CCATGG	2 cut(s)	785, 1333
BspACI	CCGC	6 cut(s)	92, 337, 479, 702, 724, 1516
BspANI	GGCC	3 cut(s)	131, 455, 764
BspCNI	CTCAG	3 cut(s)	613, 963, 1103
BspFNI	CGCG	1 cut(s)	913
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	6 cut(s)	265, 309, 492, 764, 820, 1253
BspPI	GGATC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	660
BspT107I	GGYRCC	1 cut(s)	818
BsrBI	CCGCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	1094
BsrI	ACTGG	4 cut(s)	494, 635, 705, 895
BssAI	RCCGGY	1 cut(s)	1094
BssECI	CCNNGG	9 cut(s)	52, 132, 394, 504, 540, 785, 955, 1333, 1478
BssMI	GATC	2 cut(s)	150, 879
BssSI	CACGAG	1 cut(s)	1059
BssT1I	CCWWGG	6 cut(s)	52, 132, 394, 504, 785, 1333
Bst2BI	CACGAG	1 cut(s)	1059
Bst2UI	CCWGG	3 cut(s)	466, 542, 1430
Bst4CI	ACNGT	5 cut(s)	280, 673, 1024, 1405, 1457
Bst6I	CTCTTC	3 cut(s)	15, 660, 813
BstC8I	GCNNGC	2 cut(s)	479, 968
BstDEI	CTNAG	4 cut(s)	58, 600, 950, 1090
BstDSI	CCRYGG	4 cut(s)	785, 955, 1333, 1478
BstF5I	GGATG	2 cut(s)	31, 1364
BstFNI	CGCG	1 cut(s)	913
BstKTI	GATC	2 cut(s)	153, 882
BstMAI	GTCTC	2 cut(s)	1030, 1458
BstMBI	GATC	2 cut(s)	150, 879
BstMWI	GCNNNNNNNGC	4 cut(s)	710, 842, 902, 1142
BstNI	CCWGG	3 cut(s)	466, 542, 1430
BstSCI	CCNGG	3 cut(s)	464, 540, 1428
BstSFI	CTRYAG	1 cut(s)	1029
BstSLI	GKGCMC	2 cut(s)	766, 823
BstUI	CGCG	1 cut(s)	913
BstV1I	GCAGC	4 cut(s)	847, 892, 1156, 1159
BsuRI	GGCC	3 cut(s)	131, 455, 764
BtgI	CCRYGG	4 cut(s)	785, 955, 1333, 1478
BtgZI	GCGATG	1 cut(s)	894
BtsCI	GGATG	2 cut(s)	31, 1364
BtsIMutI	CAGTG	3 cut(s)	678, 712, 1462
Cac8I	GCNNGC	2 cut(s)	479, 968
CciI	TCATGA	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	1094
Cfr13I	GGNCC	6 cut(s)	43, 307, 453, 762, 763, 1337
CseI	GACGC	1 cut(s)	902
Csp6I	GTAC	4 cut(s)	64, 604, 1303, 1447
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviQI	GTAC	4 cut(s)	64, 604, 1303, 1447
DdeI	CTNAG	4 cut(s)	58, 600, 950, 1090
DpnI	GATC	2 cut(s)	152, 881
DpnII	GATC	2 cut(s)	150, 879
Eam1104I	CTCTTC	3 cut(s)	15, 660, 813
EarI	CTCTTC	3 cut(s)	15, 660, 813
EciI	GGCGGA	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	1136
Eco130I	CCWWGG	6 cut(s)	52, 132, 394, 504, 785, 1333
Eco24I	GRGCYC	3 cut(s)	403, 766, 1138
Eco47I	GGWCC	3 cut(s)	43, 307, 1337
Eco53kI	GAGCTC	1 cut(s)	1136
Eco57I	CTGAAG	2 cut(s)	457, 1291
Eco88I	CYCGRG	1 cut(s)	1298
EcoICRI	GAGCTC	1 cut(s)	1136
EcoO109I	RGGNCCY	1 cut(s)	762
EcoRII	CCWGG	3 cut(s)	464, 540, 1428
EcoT14I	CCWWGG	6 cut(s)	52, 132, 394, 504, 785, 1333
EcoT38I	GRGCYC	3 cut(s)	403, 766, 1138
ErhI	CCWWGG	6 cut(s)	52, 132, 394, 504, 785, 1333
FaqI	GGGAC	3 cut(s)	293, 1018, 1523
FauI	CCCGC	2 cut(s)	344, 486
FauNDI	CATATG	1 cut(s)	685
Fnu4HI	GCNGC	5 cut(s)	861, 906, 1170, 1173, 1516
FokI	GGATG	2 cut(s)	18, 1371
FriOI	GRGCYC	3 cut(s)	403, 766, 1138
Fsp4HI	GCNGC	5 cut(s)	861, 906, 1170, 1173, 1516
FspBI	CTAG	1 cut(s)	917
GluI	GCNGC	5 cut(s)	861, 906, 1170, 1173, 1516
GsuI	CTGGAG	2 cut(s)	912, 921
HaeIII	GGCC	3 cut(s)	131, 455, 764
HapII	CCGG	2 cut(s)	1095, 1356
HgaI	GACGC	1 cut(s)	902
HincII	GTYRAC	1 cut(s)	888
HindII	GTYRAC	1 cut(s)	888
HinfI	GANTC	9 cut(s)	74, 214, 234, 332, 369, 884, 981, 996, 1557
HpaII	CCGG	2 cut(s)	1095, 1356
HphI	GGTGA	4 cut(s)	194, 203, 1150, 1222
Hpy166II	GTNNAC	1 cut(s)	888
Hpy188I	TCNGA	3 cut(s)	405, 485, 1377
Hpy188III	TCNNGA	4 cut(s)	310, 329, 697, 1298
Hpy8I	GTNNAC	1 cut(s)	888
Hpy99I	CGWCG	1 cut(s)	1249
HpyAV	CCTTC	2 cut(s)	1165, 1318
HpyCH4III	ACNGT	5 cut(s)	280, 673, 1024, 1405, 1457
HpyCH4IV	ACGT	1 cut(s)	1007
HpyCH4V	TGCA	8 cut(s)	69, 211, 623, 689, 713, 908, 1225, 1460
HpyF10VI	GCNNNNNNNGC	4 cut(s)	710, 842, 902, 1142
HpyF3I	CTNAG	4 cut(s)	58, 600, 950, 1090
HpySE526I	ACGT	1 cut(s)	1007
Kzo9I	GATC	2 cut(s)	150, 879
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	5 cut(s)	13, 787, 893, 1053, 1133
Lsp1109I	GCAGC	4 cut(s)	847, 892, 1156, 1159
LweI	GCATC	3 cut(s)	823, 917, 1154
MaeI	CTAG	1 cut(s)	917
MaeII	ACGT	1 cut(s)	1007
MaeIII	GTNAC	3 cut(s)	191, 667, 1313
MalI	GATC	2 cut(s)	152, 881
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	2 cut(s)	150, 879
MfeI	CAATTG	2 cut(s)	99, 745
MhlI	GDGCHC	5 cut(s)	403, 766, 823, 1058, 1138
MlyI	GAGTC	4 cut(s)	68, 208, 893, 990
MmeI	TCCRAC	3 cut(s)	526, 1045, 1424
MroXI	GAANNNNTTC	1 cut(s)	1328
MseI	TTAA	2 cut(s)	1551, 1573
MslI	CAYNNNNRTG	3 cut(s)	572, 1235, 1350
MspI	CCGG	2 cut(s)	1095, 1356
MspR9I	CCNGG	3 cut(s)	466, 542, 1430
MunI	CAATTG	2 cut(s)	99, 745
Mva1269I	GAATGC	3 cut(s)	299, 567, 1479
MvaI	CCWGG	3 cut(s)	466, 542, 1430
MvnI	CGCG	1 cut(s)	913
MwoI	GCNNNNNNNGC	4 cut(s)	710, 842, 902, 1142
NcoI	CCATGG	2 cut(s)	785, 1333
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	2 cut(s)	150, 879
NlaIV	GGNNCC	6 cut(s)	265, 309, 492, 764, 820, 1253
NmuCI	GTSAC	2 cut(s)	191, 667
PagI	TCATGA	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	3 cut(s)	299, 567, 1479
PdmI	GAANNNNTTC	1 cut(s)	1328
PfeI	GAWTC	5 cut(s)	234, 332, 369, 981, 1557
PflFI	GACNNNGTC	1 cut(s)	1009
PfoI	TCCNGGA	1 cut(s)	1428
PkrI	GCNGC	5 cut(s)	862, 907, 1171, 1174, 1517
PleI	GAGTC	4 cut(s)	68, 208, 892, 990
PpsI	GAGTC	4 cut(s)	68, 208, 892, 990
Psp124BI	GAGCTC	1 cut(s)	1138
Psp6I	CCWGG	3 cut(s)	464, 540, 1428
PspGI	CCWGG	3 cut(s)	464, 540, 1428
PspN4I	GGNNCC	6 cut(s)	265, 309, 492, 764, 820, 1253
PspOMI	GGGCCC	1 cut(s)	762
PspPI	GGNCC	6 cut(s)	43, 307, 453, 762, 763, 1337
PsyI	GACNNNGTC	1 cut(s)	1009
RsaI	GTAC	4 cut(s)	65, 605, 1304, 1448
RsaNI	GTAC	4 cut(s)	64, 604, 1303, 1447
RseI	CAYNNNNRTG	3 cut(s)	572, 1235, 1350
SacI	GAGCTC	1 cut(s)	1138
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	2 cut(s)	1551, 1573
SatI	GCNGC	5 cut(s)	861, 906, 1170, 1173, 1516
Sau3AI	GATC	2 cut(s)	150, 879
Sau96I	GGNCC	6 cut(s)	43, 307, 453, 762, 763, 1337
ScaI	AGTACT	2 cut(s)	65, 1304
SchI	GAGTC	4 cut(s)	68, 208, 893, 990
ScrFI	CCNGG	3 cut(s)	466, 542, 1430
SduI	GDGCHC	5 cut(s)	403, 766, 823, 1058, 1138
SfaNI	GCATC	3 cut(s)	823, 917, 1154
SfcI	CTRYAG	1 cut(s)	1029
SinI	GGWCC	3 cut(s)	43, 307, 1337
SmiMI	CAYNNNNRTG	3 cut(s)	572, 1235, 1350
SmlI	CTYRAG	1 cut(s)	1442
SmoI	CTYRAG	1 cut(s)	1442
SsiI	CCGC	6 cut(s)	92, 337, 479, 702, 724, 1516
SspMI	CTAG	1 cut(s)	917
SstI	GAGCTC	1 cut(s)	1138
StyD4I	CCNGG	3 cut(s)	464, 540, 1428
StyI	CCWWGG	6 cut(s)	52, 132, 394, 504, 785, 1333
TaaI	ACNGT	5 cut(s)	280, 673, 1024, 1405, 1457
TaiI	ACGT	1 cut(s)	1010
TaqI	TCGA	2 cut(s)	882, 1244
TaqII	GACCGA	1 cut(s)	1181
TatI	WGTACW	3 cut(s)	63, 1302, 1446
TauI	GCSGC	1 cut(s)	1518
TfiI	GAWTC	5 cut(s)	234, 332, 369, 981, 1557
Tru1I	TTAA	2 cut(s)	1551, 1573
Tru9I	TTAA	2 cut(s)	1551, 1573
TscAI	CASTG	3 cut(s)	678, 712, 1462
TseFI	GTSAC	2 cut(s)	191, 667
TseI	GCWGC	4 cut(s)	860, 905, 1169, 1172
Tsp45I	GTSAC	2 cut(s)	191, 667
TspDTI	ATGAA	6 cut(s)	163, 292, 317, 359, 864, 1253
TspRI	CASTG	3 cut(s)	678, 712, 1462
Tth111I	GACNNNGTC	1 cut(s)	1009
VpaK11BI	GGWCC	3 cut(s)	43, 307, 1337
XapI	RAATTY	3 cut(s)	447, 1127, 1490
XmnI	GAANNNNTTC	1 cut(s)	1328
XspI	CTAG	1 cut(s)	917
ZrmI	AGTACT	2 cut(s)	65, 1304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.