Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008195

Physical Location & Seq

Genomic Coordinates Reverse (-)

28555775 .. 28558413

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27630.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCAGCTCCTAAACCAGAAGAGATAAGCCATCCAGCAATGGACCAACTCCAAGGCTTAGAGTACTGCATTGACTCAAATCCCTCTTGGGGGGAAGCAATTGCTTTGGGGTTCCAGCACTACATTTTGGCTCTAGGAACTGCTGTGATGATCCCATCATTCCTTGTTCCTTTGATGGGTGGTGATGATGGTGACAAAGTGAGAGTAGTGCAGACTCTACTTTTTATTCAAGGAATCAACACCCTTCTACAAACATTGTTTGGAACCCGATTGCCAACCGTAATTGGAGGGTCTTACGCTTTCATGGTCCCGATAATATCCATAATTCATGATTCACGGTTGATGAAGATTGAGGACAGTCATGCGAGATTCCTTGACACCATGAAAGCAGTCCAAGGTGCTCTGATAGTAGCTTCAAGCATACAAATTGTTCTGGGATATAGTCAAATTTGGGCCATCTGTTCCAGGTTCTTCAGCCCGCTTGGAATGGTTCCGGTTATTTCCTTGGTGGGTTTTGGCCTGTTTGATAGAGGCTTCCCCGTGGTTGGAAAGTGTGTAGAAATTGGCATTCCCATGCTTATCCTTTTCGTAGCTTTCTCTCAGTACCTAAAGAACTTCCATGCAAGACAGCTACCAGTTTTAGAACGATTTGCTCTTCTTATATCAATCACAGTGATATGGGCATATGCACACCTCTTGACCGCCAGTGGTGCATACAAACACCGCCCAGACATAACCCAAGTCAATTGCCGAACTGACAGGGCCAACCTCATTTCTTCTGCTCCATGGATAAAAGTACCTTATCCTCTTCAATGGGGTGCCCCAACCTTTGATGCTGGTCATGCTTTTGGAATGATGGCAGCTGTTCTTGTTATCATCGATCGAGTCAACTGGAGCATACAAGGCTGCATCGCGTCTAGCAAGTGCCACAATACCTCCAGCTCATGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

318

Amino Acids

34.67

Weight (kDa)

7.65

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34190
fragaria_vesca	FvH4_3g07530 FvH4_3g07530 FvH4_3g07530
malus_domestica	MD05G1298500.v1.1 MD10G1277800.v1.1
prunus_persica	Prupe.4G064000_v2.0.a1 Prupe.4G064000_v2.0.a1
pyrus_communis	pycom05g27630 pycom10g23180
rosa_chinensis	RchiOBHm_Chr5g0011241
rosa_laevigata	RLG00000031821
rosa_multiflora	Rmu_sc0003242.1_g000035 Rmu_sc0017290.1_g000001 Rmu_sc0038215.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065160
rosa_rugosa	Rorug04G0456000 Rorug04G0456100
rosa_samantha	Rh5AG088000 Rh5BG082800 Rh5CG095800 Rh5DG082700
rosa_wichuraiana	Rw5G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	818
AccII	CGCG	1 cut(s)	914
AciI	CCGC	3 cut(s)	479, 702, 724
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	457
AfaI	GTAC	3 cut(s)	65, 605, 798
AfiI	CCNNNNNNNGG	4 cut(s)	89, 90, 176, 545
AgsI	TTSAA	3 cut(s)	230, 417, 812
AjnI	CCWGG	1 cut(s)	464
AluBI	AGCT	6 cut(s)	8, 413, 593, 631, 863, 942
AluI	AGCT	6 cut(s)	8, 413, 593, 631, 863, 942
Alw21I	GWGCWC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	3 cut(s)	453, 517, 762
ApeKI	GCWGC	3 cut(s)	5, 860, 906
ApoI	RAATTY	1 cut(s)	447
AspS9I	GGNCC	4 cut(s)	43, 307, 453, 762
AsuHPI	GGTGA	2 cut(s)	194, 203
AvaII	GGWCC	2 cut(s)	43, 307
BaeGI	GKGCMC	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	17, 872, 893
BccI	CCATC	6 cut(s)	39, 163, 169, 182, 464, 850
BciT130I	CCWGG	1 cut(s)	466
BfaI	CTAG	2 cut(s)	134, 918
BisI	GCNGC	3 cut(s)	6, 861, 907
BlsI	GCNGC	3 cut(s)	7, 862, 908
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	466
Bme18I	GGWCC	2 cut(s)	43, 307
BmgT120I	GGNCC	4 cut(s)	43, 307, 453, 762
BmiI	GGNNCC	5 cut(s)	113, 265, 309, 492, 820
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	2 cut(s)	823, 918
BpmI	CTGGAG	2 cut(s)	913, 922
Bsa29I	ATCGAT	1 cut(s)	879
BsaJI	CCNNGG	5 cut(s)	52, 394, 504, 540, 785
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	920, 950
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 90, 176, 545
Bse1I	ACTGG	3 cut(s)	635, 705, 896
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	466
BseCI	ATCGAT	1 cut(s)	879
BseDI	CCNNGG	5 cut(s)	52, 394, 504, 540, 785
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	4 cut(s)	89, 90, 176, 545
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	3 cut(s)	635, 705, 896
BseSI	GKGCMC	1 cut(s)	823
BseXI	GCAGC	3 cut(s)	17, 872, 893
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	914
Bsh1285I	CGRYCG	1 cut(s)	883
BshFI	GGCC	3 cut(s)	455, 519, 764
BshNI	GGYRCC	1 cut(s)	818
BshVI	ATCGAT	1 cut(s)	879
BsiEI	CGRYCG	1 cut(s)	883
BsiHKAI	GWGCWC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	4 cut(s)	89, 90, 176, 545
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	567
BsnI	GGCC	3 cut(s)	455, 519, 764
Bsp1286I	GDGCHC	2 cut(s)	403, 823
Bsp143I	GATC	2 cut(s)	150, 880
Bsp19I	CCATGG	1 cut(s)	785
BspACI	CCGC	3 cut(s)	479, 702, 724
BspANI	GGCC	3 cut(s)	455, 519, 764
BspCNI	CTCAG	1 cut(s)	613
BspDI	ATCGAT	1 cut(s)	879
BspFNI	CGCG	1 cut(s)	914
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	5 cut(s)	113, 265, 309, 492, 820
BspPI	GGATC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	660
BspT107I	GGYRCC	1 cut(s)	818
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	635, 705, 896
BssECI	CCNNGG	5 cut(s)	52, 394, 504, 540, 785
BssMI	GATC	2 cut(s)	150, 880
BssT1I	CCWWGG	4 cut(s)	52, 394, 504, 785
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	4 cut(s)	280, 339, 359, 673
Bst6I	CTCTTC	3 cut(s)	15, 660, 813
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	3 cut(s)	58, 600, 951
BstDSI	CCRYGG	2 cut(s)	540, 785
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	914
BstKTI	GATC	2 cut(s)	153, 883
BstMBI	GATC	2 cut(s)	150, 880
BstMCI	CGRYCG	1 cut(s)	883
BstMWI	GCNNNNNNNGC	3 cut(s)	710, 842, 903
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	464
BstSLI	GKGCMC	1 cut(s)	823
BstUI	CGCG	1 cut(s)	914
BstV1I	GCAGC	3 cut(s)	17, 872, 893
Bsu15I	ATCGAT	1 cut(s)	879
BsuRI	GGCC	3 cut(s)	455, 519, 764
BsuTUI	ATCGAT	1 cut(s)	879
BtgI	CCRYGG	2 cut(s)	540, 785
BtgZI	GCGATG	1 cut(s)	895
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	678, 712
Cac8I	GCNNGC	1 cut(s)	479
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	4 cut(s)	43, 307, 453, 762
ClaI	ATCGAT	1 cut(s)	879
CseI	GACGC	1 cut(s)	903
Csp6I	GTAC	3 cut(s)	64, 604, 797
CviAII	CATG	9 cut(s)	304, 329, 362, 382, 574, 620, 786, 842, 945
CviQI	GTAC	3 cut(s)	64, 604, 797
DdeI	CTNAG	3 cut(s)	58, 600, 951
DpnI	GATC	2 cut(s)	152, 882
DpnII	GATC	2 cut(s)	150, 880
Eam1104I	CTCTTC	3 cut(s)	15, 660, 813
EarI	CTCTTC	3 cut(s)	15, 660, 813
Eco130I	CCWWGG	4 cut(s)	52, 394, 504, 785
Eco47I	GGWCC	2 cut(s)	43, 307
Eco57I	CTGAAG	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	4 cut(s)	52, 394, 504, 785
ErhI	CCWWGG	4 cut(s)	52, 394, 504, 785
FaeI	CATG	9 cut(s)	307, 332, 365, 385, 577, 623, 789, 845, 948
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	9 cut(s)	303, 328, 361, 381, 573, 619, 785, 841, 944
FauI	CCCGC	1 cut(s)	486
FauNDI	CATATG	1 cut(s)	685
Fnu4HI	GCNGC	3 cut(s)	6, 861, 907
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	3 cut(s)	6, 861, 907
FspBI	CTAG	2 cut(s)	134, 918
GluI	GCNGC	3 cut(s)	6, 861, 907
GsuI	CTGGAG	2 cut(s)	913, 922
HaeIII	GGCC	3 cut(s)	455, 519, 764
HapII	CCGG	1 cut(s)	494
HgaI	GACGC	1 cut(s)	903
Hin1II	CATG	9 cut(s)	307, 332, 365, 385, 577, 623, 789, 845, 948
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HinfI	GANTC	6 cut(s)	74, 214, 234, 332, 369, 885
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	2 cut(s)	194, 203
Hpy166II	GTNNAC	1 cut(s)	889
Hpy188I	TCNGA	1 cut(s)	405
Hpy188III	TCNNGA	3 cut(s)	310, 329, 697
Hpy8I	GTNNAC	1 cut(s)	889
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	4 cut(s)	280, 339, 359, 673
HpyCH4V	TGCA	6 cut(s)	69, 211, 623, 689, 713, 909
HpyF10VI	GCNNNNNNNGC	3 cut(s)	710, 842, 903
HpyF3I	CTNAG	3 cut(s)	58, 600, 951
Hsp92II	CATG	9 cut(s)	307, 332, 365, 385, 577, 623, 789, 845, 948
Kzo9I	GATC	2 cut(s)	150, 880
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	3 cut(s)	13, 787, 894
Lsp1109I	GCAGC	3 cut(s)	17, 872, 893
LweI	GCATC	2 cut(s)	823, 918
MaeI	CTAG	2 cut(s)	134, 918
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	152, 882
MboI	GATC	2 cut(s)	150, 880
MboII	GAAGA	6 cut(s)	32, 358, 463, 647, 768, 800
MfeI	CAATTG	2 cut(s)	99, 745
MhlI	GDGCHC	2 cut(s)	403, 823
MluCI	AATT	7 cut(s)	99, 282, 324, 426, 447, 561, 745
MlyI	GAGTC	3 cut(s)	68, 208, 894
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	8 cut(s)	94, 281, 346, 524, 704, 779, 816, 946
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	466
MunI	CAATTG	2 cut(s)	99, 745
Mva1269I	GAATGC	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	466
MvnI	CGCG	1 cut(s)	914
MwoI	GCNNNNNNNGC	3 cut(s)	710, 842, 903
NcoI	CCATGG	1 cut(s)	785
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	2 cut(s)	150, 880
NlaIII	CATG	9 cut(s)	307, 332, 365, 385, 577, 623, 789, 845, 948
NlaIV	GGNNCC	5 cut(s)	113, 265, 309, 492, 820
NmuCI	GTSAC	1 cut(s)	191
PagI	TCATGA	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	234, 332, 369
PkrI	GCNGC	3 cut(s)	7, 862, 908
Ple19I	CGATCG	1 cut(s)	883
PleI	GAGTC	3 cut(s)	68, 208, 893
PpsI	GAGTC	3 cut(s)	68, 208, 893
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	5 cut(s)	113, 265, 309, 492, 820
PspPI	GGNCC	4 cut(s)	43, 307, 453, 762
PvuI	CGATCG	1 cut(s)	883
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	3 cut(s)	65, 605, 798
RsaNI	GTAC	3 cut(s)	64, 604, 797
RseI	CAYNNNNRTG	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	660
SatI	GCNGC	3 cut(s)	6, 861, 907
Sau3AI	GATC	2 cut(s)	150, 880
Sau96I	GGNCC	4 cut(s)	43, 307, 453, 762
ScaI	AGTACT	1 cut(s)	65
SchI	GAGTC	3 cut(s)	68, 208, 894
ScrFI	CCNGG	1 cut(s)	466
SduI	GDGCHC	2 cut(s)	403, 823
SfaNI	GCATC	2 cut(s)	823, 918
SinI	GGWCC	2 cut(s)	43, 307
SmiMI	CAYNNNNRTG	1 cut(s)	572
Sse9I	AATT	7 cut(s)	99, 282, 324, 426, 447, 561, 745
SsiI	CCGC	3 cut(s)	479, 702, 724
SspMI	CTAG	2 cut(s)	134, 918
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	4 cut(s)	52, 394, 504, 785
TaaI	ACNGT	4 cut(s)	280, 339, 359, 673
TaqI	TCGA	2 cut(s)	879, 883
TasI	AATT	7 cut(s)	99, 282, 324, 426, 447, 561, 745
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	3 cut(s)	234, 332, 369
TscAI	CASTG	2 cut(s)	678, 712
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	3 cut(s)	5, 860, 906
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	4 cut(s)	292, 317, 359, 398
TspRI	CASTG	2 cut(s)	678, 712
VpaK11BI	GGWCC	2 cut(s)	43, 307
XapI	RAATTY	1 cut(s)	447
XspI	CTAG	2 cut(s)	134, 918
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.