Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003104

Physical Location & Seq

Genomic Coordinates Forward (+)

5269449 .. 5270363

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGACTTTAAGCTCTGCCTGGTCGCGCTACTCTTGGCCCTGGCCGTAGCGGTCGAGGCCGCCAAACTCCATGATGTTAGCTGGGGTCTGGCCCGCTACAGCCGCGACTCATCCCTCGTCCAGGCCAACGTGGGCGACGTCATTGGAGAGGACAACGAGATGATGCTAGACTCCGAATCAAGCCGTCGCACACTGGCTGGACGAACCAGGTACATCAGCTACGGTGCCCTAAAGAGGAATCGCATTCCATGCCGCCGGCGTGGTGCGTCGTACTACAACTGCGGTCGACCCAACCAGCAGGCTAACACCTATCGTCGAGGTTGCAGTGTCATCACCAGATGCGCTAGGTTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0010769 GO:0019722 GO:0019932 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0040008 GO:0042995 GO:0043900 GO:0044464 GO:0045595 GO:0048018 GO:0048046 GO:0048583 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0055044 GO:0060284 GO:0065007 GO:0065009 GO:0080092 GO:0090406 GO:0098772 GO:0120025 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

119

Amino Acids

13.25

Weight (kDa)

9.82

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	53 - 116	3.6e-27	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28270 AT2G33775 AT3G05490
fragaria_vesca	FvH4_3g09010 FvH4_3g09020
malus_domestica	MD00G1116200.v1.1 MD10G1292800.v1.1 MD10G1292900.v1.1
prunus_persica	Prupe.4G049000_v2.0.a1
pyrus_communis	pycom05g28940 pycom10g24490
rosa_chinensis	RchiOBHm_Chr5g0008651 RchiOBHm_Chr5g0008661 RchiOBHm_Chr5g0008671
rosa_laevigata	RLG00000031590 RLG00000031591 RLG00000031592
rosa_multiflora	Rmu_sc0001665.1_g000030 Rmu_sc0001665.1_g000031 Rmu_sc0001665.1_g000040
rosa_roxburghii	Rroxscaffold_1G00067890 Rroxscaffold_1G00067900 Rroxscaffold_1G00067910
rosa_rugosa	Rorug04G0437700 Rorug04G0437700 Rorug04G0437700
rosa_samantha	Rh5AG066300 Rh5BG063600 Rh5BG063700 Rh5CG073800 Rh5CG073900 Rh5CG074100 Rh5DG062500 Rh5DG062600
rosa_wichuraiana	Rw5G006230 Rw5G006260 Rw5G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	286
AccII	CGCG	2 cut(s)	26, 105
AciI	CCGC	6 cut(s)	50, 60, 94, 103, 253, 282
AcoI	YGGCCR	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	212, 272
AfiI	CCNNNNNNNGG	2 cut(s)	121, 234
AjnI	CCWGG	4 cut(s)	18, 39, 120, 206
AluBI	AGCT	3 cut(s)	13, 81, 219
AluI	AGCT	3 cut(s)	13, 81, 219
AoxI	GGCC	5 cut(s)	36, 42, 57, 90, 123
AspLEI	GCGC	2 cut(s)	28, 344
AspS9I	GGNCC	2 cut(s)	37, 91
AsuHPI	GGTGA	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	224
BceAI	ACGGC	2 cut(s)	29, 168
BciT130I	CCWGG	4 cut(s)	20, 41, 122, 208
BfaI	CTAG	2 cut(s)	167, 345
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	3 cut(s)	60, 103, 253
BlsI	GCNGC	3 cut(s)	61, 104, 254
Bme1390I	CCNGG	4 cut(s)	20, 41, 122, 208
BmgT120I	GGNCC	2 cut(s)	37, 91
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	4 cut(s)	20, 41, 122, 208
BmsI	GCATC	2 cut(s)	153, 329
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 234
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	4 cut(s)	20, 41, 122, 208
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	121, 234
BseNI	ACTGG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	81
Bsh1236I	CGCG	2 cut(s)	26, 105
Bsh1285I	CGRYCG	2 cut(s)	54, 286
BshFI	GGCC	5 cut(s)	38, 44, 59, 92, 125
BshNI	GGYRCC	1 cut(s)	224
BsiEI	CGRYCG	2 cut(s)	54, 286
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	121, 234
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	5 cut(s)	38, 44, 59, 92, 125
Bsp1286I	GDGCHC	1 cut(s)	229
BspACI	CCGC	6 cut(s)	50, 60, 94, 103, 253, 282
BspANI	GGCC	5 cut(s)	38, 44, 59, 92, 125
BspFNI	CGCG	2 cut(s)	26, 105
BspLI	GGNNCC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	138
Bst2UI	CCWGG	4 cut(s)	20, 41, 122, 208
Bst4CI	ACNGT	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	94, 257, 300
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	2 cut(s)	26, 105
BstHHI	GCGC	2 cut(s)	28, 344
BstMCI	CGRYCG	2 cut(s)	54, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 102, 249
BstNI	CCWGG	4 cut(s)	20, 41, 122, 208
BstSCI	CCNGG	4 cut(s)	18, 39, 120, 206
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	2 cut(s)	26, 105
BsuRI	GGCC	5 cut(s)	38, 44, 59, 92, 125
BtsCI	GGATG	1 cut(s)	110
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	191, 331
Cac8I	GCNNGC	3 cut(s)	94, 257, 300
CfoI	GCGC	2 cut(s)	28, 344
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	37, 91
CseI	GACGC	1 cut(s)	255
CsiI	ACCWGGT	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	211, 271
CviAII	CATG	2 cut(s)	71, 249
CviQI	GTAC	2 cut(s)	211, 271
EaeI	YGGCCR	1 cut(s)	42
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoRII	CCWGG	4 cut(s)	18, 39, 120, 206
FaeI	CATG	2 cut(s)	74, 252
FaiI	YATR	2 cut(s)	72, 250
FatI	CATG	2 cut(s)	70, 248
FauI	CCCGC	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	3 cut(s)	60, 103, 253
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	3 cut(s)	60, 103, 253
FspBI	CTAG	2 cut(s)	167, 345
GlaI	GCGC	2 cut(s)	27, 343
GluI	GCNGC	3 cut(s)	60, 103, 253
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	5 cut(s)	38, 44, 59, 92, 125
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	2 cut(s)	28, 344
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	74, 252
Hin6I	GCGC	2 cut(s)	26, 342
HinP1I	GCGC	2 cut(s)	26, 342
HincII	GTYRAC	1 cut(s)	287
HindII	GTYRAC	1 cut(s)	287
HinfI	GANTC	4 cut(s)	107, 170, 176, 238
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	4 cut(s)	140, 189, 271, 318
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	2 cut(s)	129, 138
HpyCH4V	TGCA	1 cut(s)	324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 102, 249
HpySE526I	ACGT	2 cut(s)	129, 138
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	74, 252
HspAI	GCGC	2 cut(s)	26, 342
KroI	GCCGGC	1 cut(s)	255
KroNI	GCCGGC	1 cut(s)	257
LweI	GCATC	2 cut(s)	153, 329
MabI	ACCWGGT	1 cut(s)	206
MaeI	CTAG	2 cut(s)	167, 345
MaeII	ACGT	2 cut(s)	129, 138
MhlI	GDGCHC	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	101, 164
MnlI	CCTC	5 cut(s)	49, 125, 142, 228, 311
MreI	CGCCGGCG	1 cut(s)	255
MroNI	GCCGGC	1 cut(s)	255
MseI	TTAA	2 cut(s)	9, 351
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	4 cut(s)	20, 41, 122, 208
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	4 cut(s)	20, 41, 122, 208
MvnI	CGCG	2 cut(s)	26, 105
MwoI	GCNNNNNNNGC	3 cut(s)	56, 102, 249
NaeI	GCCGGC	1 cut(s)	257
NgoMIV	GCCGGC	1 cut(s)	255
NlaIII	CATG	2 cut(s)	74, 252
NlaIV	GGNNCC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	176, 238
PkrI	GCNGC	3 cut(s)	61, 104, 254
PleI	GAGTC	2 cut(s)	101, 164
PpsI	GAGTC	2 cut(s)	101, 164
Psp6I	CCWGG	4 cut(s)	18, 39, 120, 206
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	4 cut(s)	18, 39, 120, 206
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	37, 91
RsaI	GTAC	2 cut(s)	212, 272
RsaNI	GTAC	2 cut(s)	211, 271
SalI	GTCGAC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	9, 351
SatI	GCNGC	3 cut(s)	60, 103, 253
Sau96I	GGNCC	2 cut(s)	37, 91
SchI	GAGTC	2 cut(s)	101, 164
ScrFI	CCNGG	4 cut(s)	20, 41, 122, 208
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	9 cut(s)	15, 83, 132, 141, 212, 221, 311, 322, 350
SexAI	ACCWGGT	1 cut(s)	206
SfaNI	GCATC	2 cut(s)	153, 329
SfcI	CTRYAG	1 cut(s)	97
SgrAI	CRCCGGYG	1 cut(s)	255
SsiI	CCGC	6 cut(s)	50, 60, 94, 103, 253, 282
SspMI	CTAG	2 cut(s)	167, 345
StyD4I	CCNGG	4 cut(s)	18, 39, 120, 206
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	2 cut(s)	132, 141
TaqI	TCGA	3 cut(s)	54, 286, 316
TauI	GCSGC	3 cut(s)	62, 105, 255
TfiI	GAWTC	2 cut(s)	176, 238
Tru1I	TTAA	2 cut(s)	9, 351
Tru9I	TTAA	2 cut(s)	9, 351
TscAI	CASTG	2 cut(s)	198, 331
TspRI	CASTG	2 cut(s)	198, 331
XagI	CCTNNNNNAGG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	286
XspI	CTAG	2 cut(s)	167, 345
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.