Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003104

Physical Location & Seq

Genomic Coordinates Reverse (-)

5534414 .. 5537856

Gene Structure 3443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG073800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGACTTCAAGCTCTGCCTGGTCGCGCTCCTATTGGCCCTGGCCGTAGCAGTCGAGGCCTCCCAGCTCCATGATGCTGGCTGGAGCATTGCCCGCTACAGCCACGATTCATCCCTCGTCGACTTCAGCGTGGATGACGTCATTGGAGTGGACAACGAGATGATGCTTGACTCTGAATCAAGCCGCCGCACGCTGCGCGGTCGAGGCAGATGCAAATCAGAAAATGCTGAAAGGAGAAAGGCGTCTCAAACAGAGCACATGAAACTTTCAAAGTTTGCAATCAATAGCCCACCAAACCATACAATACTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0010769 GO:0019722 GO:0019932 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0040008 GO:0042995 GO:0043900 GO:0044464 GO:0045595 GO:0048018 GO:0048046 GO:0048583 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0055044 GO:0060284 GO:0065007 GO:0065009 GO:0080092 GO:0090406 GO:0098772 GO:0120025 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

104

Amino Acids

11.55

Weight (kDa)

6.4

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28270 AT2G33775 AT3G05490
fragaria_vesca	FvH4_3g09010 FvH4_3g09020
malus_domestica	MD00G1116200.v1.1 MD10G1292800.v1.1 MD10G1292900.v1.1
prunus_persica	Prupe.4G049000_v2.0.a1
pyrus_communis	pycom05g28940 pycom10g24490
rosa_chinensis	RchiOBHm_Chr5g0008651 RchiOBHm_Chr5g0008661 RchiOBHm_Chr5g0008671
rosa_laevigata	RLG00000031590 RLG00000031591 RLG00000031592
rosa_multiflora	Rmu_sc0001665.1_g000030 Rmu_sc0001665.1_g000031 Rmu_sc0001665.1_g000040
rosa_roxburghii	Rroxscaffold_1G00067890 Rroxscaffold_1G00067900 Rroxscaffold_1G00067910
rosa_rugosa	Rorug04G0437700 Rorug04G0437700 Rorug04G0437700
rosa_samantha	Rh5AG066300 Rh5BG063600 Rh5BG063700 Rh5CG073800 Rh5CG073900 Rh5CG074100 Rh5DG062500 Rh5DG062600
rosa_wichuraiana	Rw5G006230 Rw5G006260 Rw5G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	2 cut(s)	26, 198
AciI	CCGC	4 cut(s)	94, 184, 187, 198
AcoI	YGGCCR	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	109
AcyI	GRCGYC	2 cut(s)	138, 242
AgsI	TTSAA	2 cut(s)	10, 270
AjnI	CCWGG	2 cut(s)	18, 39
AluBI	AGCT	2 cut(s)	13, 67
AluI	AGCT	2 cut(s)	13, 67
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	249
AoxI	GGCC	3 cut(s)	36, 42, 57
ApeKI	GCWGC	1 cut(s)	193
AspLEI	GCGC	2 cut(s)	28, 198
AspS9I	GGNCC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	180
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BciT130I	CCWGG	2 cut(s)	20, 41
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	3 cut(s)	184, 187, 194
BlsI	GCNGC	3 cut(s)	185, 188, 195
Bme1390I	CCNGG	2 cut(s)	20, 41
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	20, 41
BmsI	GCATC	3 cut(s)	64, 153, 200
BpmI	CTGGAG	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	214
BsaHI	GRCGYC	2 cut(s)	138, 242
BsaJI	CCNNGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	20, 41
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	110, 139
BseJI	GATNNNNATC	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	180
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	2 cut(s)	26, 198
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	38, 44, 59
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	249
BsmBI	CGTCTC	1 cut(s)	249
BsnI	GGCC	3 cut(s)	38, 44, 59
Bsp1286I	GDGCHC	1 cut(s)	258
BspACI	CCGC	4 cut(s)	94, 184, 187, 198
BspANI	GGCC	3 cut(s)	38, 44, 59
BspFNI	CGCG	2 cut(s)	26, 198
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	39
BssNI	GRCGYC	2 cut(s)	138, 242
Bst2UI	CCWGG	2 cut(s)	20, 41
BstACI	GRCGYC	2 cut(s)	138, 242
BstC8I	GCNNGC	3 cut(s)	79, 94, 191
BstF5I	GGATG	2 cut(s)	110, 139
BstFNI	CGCG	2 cut(s)	26, 198
BstHHI	GCGC	2 cut(s)	28, 198
BstMAI	GTCTC	1 cut(s)	249
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 93, 195, 204
BstNI	CCWGG	2 cut(s)	20, 41
BstSCI	CCNGG	2 cut(s)	18, 39
BstSFI	CTRYAG	1 cut(s)	97
BstUI	CGCG	2 cut(s)	26, 198
BstV1I	GCAGC	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	77
BsuRI	GGCC	3 cut(s)	38, 44, 59
BtsCI	GGATG	2 cut(s)	110, 139
Cac8I	GCNNGC	3 cut(s)	79, 94, 191
CfoI	GCGC	2 cut(s)	28, 198
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	231
CviAII	CATG	2 cut(s)	71, 259
CviJI	RGCY	9 cut(s)	13, 38, 44, 59, 67, 81, 102, 183, 288
CviKI_1	RGCY	9 cut(s)	13, 38, 44, 59, 67, 81, 102, 183, 288
EaeI	YGGCCR	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	18, 39
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	2 cut(s)	74, 262
FaiI	YATR	4 cut(s)	72, 260, 300, 313
FatI	CATG	2 cut(s)	70, 258
FauI	CCCGC	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	184, 187, 194
FokI	GGATG	2 cut(s)	97, 146
Fsp4HI	GCNGC	3 cut(s)	184, 187, 194
GlaI	GCGC	2 cut(s)	27, 197
GluI	GCNGC	3 cut(s)	184, 187, 194
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	38, 44, 59
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	2 cut(s)	28, 198
Hin1I	GRCGYC	2 cut(s)	138, 242
Hin1II	CATG	2 cut(s)	74, 262
Hin6I	GCGC	2 cut(s)	26, 196
HinP1I	GCGC	2 cut(s)	26, 196
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	107, 170, 176
Hpy166II	GTNNAC	2 cut(s)	121, 151
Hpy188I	TCNGA	2 cut(s)	175, 220
Hpy8I	GTNNAC	2 cut(s)	121, 151
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	213, 278
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 93, 195, 204
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	138, 242
Hsp92II	CATG	2 cut(s)	74, 262
HspAI	GCGC	2 cut(s)	26, 196
LmnI	GCTCC	3 cut(s)	33, 72, 84
LpnPI	CCDG	7 cut(s)	5, 26, 32, 53, 63, 67, 77
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	3 cut(s)	64, 153, 200
MaeII	ACGT	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	4 cut(s)	49, 70, 125, 197
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	20, 41
MvaI	CCWGG	2 cut(s)	20, 41
MvnI	CGCG	2 cut(s)	26, 198
MwoI	GCNNNNNNNGC	4 cut(s)	56, 93, 195, 204
NlaIII	CATG	2 cut(s)	74, 262
PceI	AGGCCT	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	107, 176
PkrI	GCNGC	3 cut(s)	185, 188, 195
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	18, 39
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	2 cut(s)	18, 39
PspPI	GGNCC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	146
SalI	GTCGAC	1 cut(s)	119
SatI	GCNGC	3 cut(s)	184, 187, 194
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	20, 41
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	3 cut(s)	15, 69, 141
SfaNI	GCATC	3 cut(s)	64, 153, 200
SfcI	CTRYAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	146
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	4 cut(s)	94, 184, 187, 198
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	18, 39
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	54, 120, 202
TauI	GCSGC	2 cut(s)	186, 189
TfiI	GAWTC	2 cut(s)	107, 176
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	99, 275
XmiI	GTMKAC	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.