Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003104

Physical Location & Seq

Genomic Coordinates Reverse (-)

5255306 .. 5256449

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG063600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGACTTCAAGCTCTGCCTGGTCGCGCTCCTATTGGCCCTGGCCGTAGCAGTCGAGGCCTCCCAGCTCCATGATGCTAGCTGGGGCCTTGCCCGCTACAGCCACGACTCATCCCTCGTCGACGTCAGCGTCGGTGACGTCATTGGAGTGGACAACGAGATGATGCTTGACTCCGAATCAAGCCGCCGCACGCTACGCGGTCGAGGCAGAAAACTGAGGATGAAGGCCGTTGATGAAAAGCAACTGAAAAATGTAGTGAAAGATGACCTAGTTAGGCGGCTTTACTATAGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0010769 GO:0019722 GO:0019932 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0040008 GO:0042995 GO:0043900 GO:0044464 GO:0045595 GO:0048018 GO:0048046 GO:0048583 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0055044 GO:0060284 GO:0065007 GO:0065009 GO:0080092 GO:0090406 GO:0098772 GO:0120025 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

98

Amino Acids

10.95

Weight (kDa)

7.89

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28270 AT2G33775 AT3G05490
fragaria_vesca	FvH4_3g09010 FvH4_3g09020
malus_domestica	MD00G1116200.v1.1 MD10G1292800.v1.1 MD10G1292900.v1.1
prunus_persica	Prupe.4G049000_v2.0.a1
pyrus_communis	pycom05g28940 pycom10g24490
rosa_chinensis	RchiOBHm_Chr5g0008651 RchiOBHm_Chr5g0008661 RchiOBHm_Chr5g0008671
rosa_laevigata	RLG00000031590 RLG00000031591 RLG00000031592
rosa_multiflora	Rmu_sc0001665.1_g000030 Rmu_sc0001665.1_g000031 Rmu_sc0001665.1_g000040
rosa_roxburghii	Rroxscaffold_1G00067890 Rroxscaffold_1G00067900 Rroxscaffold_1G00067910
rosa_rugosa	Rorug04G0437700 Rorug04G0437700 Rorug04G0437700
rosa_samantha	Rh5AG066300 Rh5BG063600 Rh5BG063700 Rh5CG073800 Rh5CG073900 Rh5CG074100 Rh5DG062500 Rh5DG062600
rosa_wichuraiana	Rw5G006230 Rw5G006260 Rw5G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	2 cut(s)	126, 141
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	2 cut(s)	26, 198
AciI	CCGC	5 cut(s)	94, 184, 187, 198, 277
AcoI	YGGCCR	1 cut(s)	42
AcyI	GRCGYC	2 cut(s)	123, 138
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	18, 39
AluBI	AGCT	3 cut(s)	13, 67, 81
AluI	AGCT	3 cut(s)	13, 67, 81
AoxI	GGCC	5 cut(s)	36, 42, 57, 85, 225
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	2 cut(s)	37, 85
AsuHPI	GGTGA	1 cut(s)	146
AsuNHI	GCTAGC	1 cut(s)	77
BceAI	ACGGC	2 cut(s)	29, 212
BciT130I	CCWGG	2 cut(s)	20, 41
BfaI	CTAG	2 cut(s)	78, 269
BfmI	CTRYAG	2 cut(s)	97, 286
BisI	GCNGC	3 cut(s)	184, 187, 278
BlsI	GCNGC	3 cut(s)	185, 188, 279
Bme1390I	CCNGG	2 cut(s)	20, 41
BmgT120I	GGNCC	2 cut(s)	37, 85
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	20, 41
BmsI	GCATC	2 cut(s)	64, 153
BmtI	GCTAGC	1 cut(s)	81
BsaHI	GRCGYC	2 cut(s)	123, 138
BsaJI	CCNNGG	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	20, 41
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	110, 225
BseMII	CTCAG	1 cut(s)	206
BseYI	CCCAGC	2 cut(s)	63, 81
Bsh1236I	CGCG	2 cut(s)	26, 198
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	5 cut(s)	38, 44, 59, 87, 227
BsiEI	CGRYCG	1 cut(s)	202
BsnI	GGCC	5 cut(s)	38, 44, 59, 87, 227
BspACI	CCGC	5 cut(s)	94, 184, 187, 198, 277
BspANI	GGCC	5 cut(s)	38, 44, 59, 87, 227
BspCNI	CTCAG	1 cut(s)	207
BspFNI	CGCG	2 cut(s)	26, 198
BspLI	GGNNCC	1 cut(s)	86
BspOI	GCTAGC	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	39
BssNI	GRCGYC	2 cut(s)	123, 138
Bst2UI	CCWGG	2 cut(s)	20, 41
BstACI	GRCGYC	2 cut(s)	123, 138
BstC8I	GCNNGC	3 cut(s)	79, 94, 191
BstDEI	CTNAG	1 cut(s)	215
BstF5I	GGATG	2 cut(s)	110, 225
BstFNI	CGCG	2 cut(s)	26, 198
BstHHI	GCGC	1 cut(s)	28
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 93, 195, 204
BstNI	CCWGG	2 cut(s)	20, 41
BstSCI	CCNGG	2 cut(s)	18, 39
BstSFI	CTRYAG	2 cut(s)	97, 286
BstUI	CGCG	2 cut(s)	26, 198
BsuRI	GGCC	5 cut(s)	38, 44, 59, 87, 227
BtsCI	GGATG	2 cut(s)	110, 225
Cac8I	GCNNGC	3 cut(s)	79, 94, 191
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	37, 85
CseI	GACGC	1 cut(s)	118
CviAII	CATG	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	215
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	18, 39
FaeI	CATG	1 cut(s)	74
FaiI	YATR	2 cut(s)	72, 288
FatI	CATG	1 cut(s)	70
FauI	CCCGC	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	184, 187, 278
FokI	GGATG	2 cut(s)	97, 232
Fsp4HI	GCNGC	3 cut(s)	184, 187, 278
FspBI	CTAG	2 cut(s)	78, 269
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	184, 187, 278
GsaI	CCCAGC	2 cut(s)	67, 85
HaeIII	GGCC	5 cut(s)	38, 44, 59, 87, 227
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	2 cut(s)	123, 138
Hin1II	CATG	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	107, 170, 176
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	121, 151
Hpy188I	TCNGA	1 cut(s)	175
Hpy8I	GTNNAC	2 cut(s)	121, 151
Hpy99I	CGWCG	3 cut(s)	122, 125, 134
HpyAV	CCTTC	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	123, 138
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 93, 195, 204
HpyF3I	CTNAG	1 cut(s)	215
HpySE526I	ACGT	2 cut(s)	123, 138
Hsp92I	GRCGYC	2 cut(s)	123, 138
Hsp92II	CATG	1 cut(s)	74
HspAI	GCGC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	33, 72
LpnPI	CCDG	6 cut(s)	5, 26, 32, 53, 67, 77
LweI	GCATC	2 cut(s)	64, 153
MaeI	CTAG	2 cut(s)	78, 269
MaeII	ACGT	2 cut(s)	123, 138
MaeIII	GTNAC	1 cut(s)	134
MlyI	GAGTC	2 cut(s)	101, 164
MnlI	CCTC	5 cut(s)	49, 70, 125, 197, 210
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	20, 41
MvaI	CCWGG	2 cut(s)	20, 41
MvnI	CGCG	2 cut(s)	26, 198
MwoI	GCNNNNNNNGC	4 cut(s)	56, 93, 195, 204
NheI	GCTAGC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	185, 188, 279
PleI	GAGTC	2 cut(s)	101, 164
PpsI	GAGTC	2 cut(s)	101, 164
Psp6I	CCWGG	2 cut(s)	18, 39
PspFI	CCCAGC	2 cut(s)	63, 81
PspGI	CCWGG	2 cut(s)	18, 39
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	2 cut(s)	37, 85
RseI	CAYNNNNRTG	1 cut(s)	146
SalI	GTCGAC	1 cut(s)	119
SatI	GCNGC	3 cut(s)	184, 187, 278
Sau96I	GGNCC	2 cut(s)	37, 85
SchI	GAGTC	2 cut(s)	101, 164
ScrFI	CCNGG	2 cut(s)	20, 41
SetI	ASST	6 cut(s)	15, 69, 83, 126, 141, 270
SfaNI	GCATC	2 cut(s)	64, 153
SfcI	CTRYAG	2 cut(s)	97, 286
SgrDI	CGTCGACG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	146
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	5 cut(s)	94, 184, 187, 198, 277
SspMI	CTAG	2 cut(s)	78, 269
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	18, 39
TaiI	ACGT	2 cut(s)	126, 141
TaqI	TCGA	3 cut(s)	54, 120, 202
TauI	GCSGC	3 cut(s)	186, 189, 280
TfiI	GAWTC	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	236, 249
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	2 cut(s)	78, 269
ZraI	GACGTC	2 cut(s)	124, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.