Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003104

Physical Location & Seq

Genomic Coordinates Reverse (-)

2340631 .. 2340999

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G049000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGATACAAAGTGTGCTTGATTGTGCTCATGGTGGTCTTGGCCATGGTGGCCCAGTCATCAGCTAAAGGGCATGAGGCCAGCTGGGGCCTCAGCTTCACCGCCCACGACGACGAGTCGCTGATCGACAGAGCCAACAGCAAAGTTGGCGACATGATCGGAGAAGAAAACGAAATGATGATGGACTCAGAGAGCAGCCGTCGAACACTTAGAGGGGCTCAAGGAAGGTACATTGCTTACGGTGCCCTGAGGCGCAATGCTGTGCCATGCGGACGCCGCGGCCAGTCCTACTACAACTGCCAAAACAGGCAGAGAGCCAACCCTTACCAGCGCGGCTGCACCATCATCACCCGCTGCGCCAGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0010769 GO:0019722 GO:0019932 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0040008 GO:0042995 GO:0043900 GO:0044464 GO:0045595 GO:0048018 GO:0048046 GO:0048583 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0055044 GO:0060284 GO:0065007 GO:0065009 GO:0080092 GO:0090406 GO:0098772 GO:0120025 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

123

Amino Acids

13.68

Weight (kDa)

9.5

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28270 AT2G33775 AT3G05490
fragaria_vesca	FvH4_3g09010 FvH4_3g09020
malus_domestica	MD00G1116200.v1.1 MD10G1292800.v1.1 MD10G1292900.v1.1
prunus_persica	Prupe.4G049000_v2.0.a1
pyrus_communis	pycom05g28940 pycom10g24490
rosa_chinensis	RchiOBHm_Chr5g0008651 RchiOBHm_Chr5g0008661 RchiOBHm_Chr5g0008671
rosa_laevigata	RLG00000031590 RLG00000031591 RLG00000031592
rosa_multiflora	Rmu_sc0001665.1_g000030 Rmu_sc0001665.1_g000031 Rmu_sc0001665.1_g000040
rosa_roxburghii	Rroxscaffold_1G00067890 Rroxscaffold_1G00067900 Rroxscaffold_1G00067910
rosa_rugosa	Rorug04G0437700 Rorug04G0437700 Rorug04G0437700
rosa_samantha	Rh5AG066300 Rh5BG063600 Rh5BG063700 Rh5CG073800 Rh5CG073900 Rh5CG074100 Rh5DG062500 Rh5DG062600
rosa_wichuraiana	Rw5G006230 Rw5G006260 Rw5G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccII	CGCG	2 cut(s)	279, 333
AciI	CCGC	6 cut(s)	102, 270, 277, 279, 333, 352
AcoI	YGGCCR	2 cut(s)	42, 280
AcyI	GRCGYC	1 cut(s)	274
AfaI	GTAC	1 cut(s)	230
AhdI	GACNNNNNGTC	1 cut(s)	115
AluBI	AGCT	3 cut(s)	65, 84, 96
AluI	AGCT	3 cut(s)	65, 84, 96
Alw21I	GWGCWC	1 cut(s)	30
AlwNI	CAGNNNCTG	1 cut(s)	366
AoxI	GGCC	5 cut(s)	42, 51, 78, 88, 280
ApeKI	GCWGC	3 cut(s)	195, 336, 354
AspLEI	GCGC	3 cut(s)	255, 333, 359
AspS9I	GGNCC	2 cut(s)	52, 88
AsuHPI	GGTGA	2 cut(s)	91, 340
AxyI	CCTNAGG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	207, 323, 341
BccI	CCATC	2 cut(s)	175, 350
BceAI	ACGGC	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	6 cut(s)	196, 277, 280, 334, 337, 355
BlsI	GCNGC	6 cut(s)	197, 278, 281, 335, 338, 356
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	52, 88
BmiI	GGNNCC	2 cut(s)	89, 244
BmrI	ACTGGG	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	45, 277
Bse1I	ACTGG	2 cut(s)	55, 283
Bse21I	CCTNAGG	1 cut(s)	248
Bse3DI	GCAATG	2 cut(s)	231, 262
BseDI	CCNNGG	2 cut(s)	45, 277
BseMI	GCAATG	2 cut(s)	231, 262
BseMII	CTCAG	3 cut(s)	106, 201, 239
BseNI	ACTGG	2 cut(s)	55, 283
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	3 cut(s)	207, 323, 341
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	322
Bsh1236I	CGCG	2 cut(s)	279, 333
BshFI	GGCC	5 cut(s)	44, 53, 80, 90, 282
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	30
BsnI	GGCC	5 cut(s)	44, 53, 80, 90, 282
Bsp1286I	GDGCHC	3 cut(s)	30, 220, 247
Bsp143I	GATC	2 cut(s)	123, 156
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	6 cut(s)	102, 270, 277, 279, 333, 352
BspANI	GGCC	5 cut(s)	44, 53, 80, 90, 282
BspCNI	CTCAG	3 cut(s)	105, 200, 240
BspFNI	CGCG	2 cut(s)	279, 333
BspLI	GGNNCC	2 cut(s)	89, 244
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	2 cut(s)	231, 262
BsrI	ACTGG	2 cut(s)	55, 283
BssECI	CCNNGG	2 cut(s)	45, 277
BssMI	GATC	2 cut(s)	123, 156
BssNI	GRCGYC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	4 cut(s)	92, 187, 209, 248
BstDSI	CCRYGG	2 cut(s)	45, 277
BstFNI	CGCG	2 cut(s)	279, 333
BstHHI	GCGC	3 cut(s)	255, 333, 359
BstKTI	GATC	2 cut(s)	126, 159
BstMBI	GATC	2 cut(s)	123, 156
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 147, 242, 276, 363
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	2 cut(s)	279, 333
BstV1I	GCAGC	3 cut(s)	207, 323, 341
Bsu36I	CCTNAGG	1 cut(s)	248
BsuRI	GGCC	5 cut(s)	44, 53, 80, 90, 282
BtgI	CCRYGG	2 cut(s)	45, 277
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	366
CfoI	GCGC	3 cut(s)	255, 333, 359
Cfr13I	GGNCC	2 cut(s)	52, 88
Cfr42I	CCGCGG	1 cut(s)	280
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	5 cut(s)	31, 46, 74, 154, 267
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	4 cut(s)	92, 187, 209, 248
DpnI	GATC	2 cut(s)	125, 158
DpnII	GATC	2 cut(s)	123, 156
DriI	GACNNNNNGTC	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	42, 280
Eam1105I	GACNNNNNGTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	5 cut(s)	34, 49, 77, 157, 270
FaiI	YATR	5 cut(s)	32, 47, 75, 155, 268
FatI	CATG	5 cut(s)	30, 45, 73, 153, 266
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	6 cut(s)	196, 277, 280, 334, 337, 355
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	6 cut(s)	196, 277, 280, 334, 337, 355
GlaI	GCGC	3 cut(s)	254, 332, 358
GluI	GCNGC	6 cut(s)	196, 277, 280, 334, 337, 355
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	5 cut(s)	44, 53, 80, 90, 282
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	3 cut(s)	255, 333, 359
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	5 cut(s)	34, 49, 77, 157, 270
Hin6I	GCGC	3 cut(s)	253, 331, 357
HinP1I	GCGC	3 cut(s)	253, 331, 357
HinfI	GANTC	2 cut(s)	116, 185
HphI	GGTGA	2 cut(s)	91, 340
Hpy188I	TCNGA	2 cut(s)	161, 190
Hpy99I	CGWCG	3 cut(s)	113, 116, 204
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 147, 242, 276, 363
HpyF3I	CTNAG	4 cut(s)	92, 187, 209, 248
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	5 cut(s)	34, 49, 77, 157, 270
HspAI	GCGC	3 cut(s)	253, 331, 357
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	123, 156
LpnPI	CCDG	7 cut(s)	68, 70, 94, 260, 292, 296, 341
Lsp1109I	GCAGC	3 cut(s)	207, 323, 341
MalI	GATC	2 cut(s)	125, 158
MboI	GATC	2 cut(s)	123, 156
MboII	GAAGA	1 cut(s)	176
MhlI	GDGCHC	3 cut(s)	30, 220, 247
MlsI	TGGCCA	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	125, 179
MnlI	CCTC	4 cut(s)	70, 101, 206, 243
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	3 cut(s)	84, 279, 354
MvnI	CGCG	2 cut(s)	279, 333
MwoI	GCNNNNNNNGC	5 cut(s)	50, 147, 242, 276, 363
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	123, 156
NlaIII	CATG	5 cut(s)	34, 49, 77, 157, 270
NlaIV	GGNNCC	2 cut(s)	89, 244
PkrI	GCNGC	6 cut(s)	197, 278, 281, 335, 338, 356
PleI	GAGTC	2 cut(s)	124, 179
PpsI	GAGTC	2 cut(s)	124, 179
PspFI	CCCAGC	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	89, 244
PspPI	GGNCC	2 cut(s)	52, 88
PstNI	CAGNNNCTG	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	84
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SacII	CCGCGG	1 cut(s)	280
SatI	GCNGC	6 cut(s)	196, 277, 280, 334, 337, 355
Sau3AI	GATC	2 cut(s)	123, 156
Sau96I	GGNCC	2 cut(s)	52, 88
SchI	GAGTC	2 cut(s)	125, 179
SduI	GDGCHC	3 cut(s)	30, 220, 247
SetI	ASST	4 cut(s)	67, 86, 98, 230
SfiI	GGCCNNNNNGGCC	1 cut(s)	50
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
SsiI	CCGC	6 cut(s)	102, 270, 277, 279, 333, 352
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	242
TaqI	TCGA	2 cut(s)	126, 202
TauI	GCSGC	3 cut(s)	279, 282, 336
TseI	GCWGC	3 cut(s)	195, 336, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.